Canonical labeling of proteome maps

Milan Randić, Nella Lerš, Damir Vukičević, Dejan Plavšić, Brian D Gute, Subhash C Basak

Research output: Contribution to journalArticlepeer-review

22 Scopus citations

Abstract

We propose a canonical labeling of proteome maps, which enables one to sort and catalog the maps in a simple way. The canonical label of a proteome map is based on the canonical labeling of vertexes of Hasse diagram embedded in the map resulting in the adjacency matrix, the rows of which when viewed as binary numbers are the smallest possible such numbers. The use of the approach in documentation is illustrated with the proteome maps of liver cells of healthy male Fisher F344 rats and the rats treated with different peroxisome proliferators.

Original languageEnglish (US)
Pages (from-to)1347-1352
Number of pages6
JournalJournal of Proteome Research
Volume4
Issue number4
DOIs
StatePublished - Jul 1 2005

Keywords

  • Canonical labeling
  • Documentation
  • Hasse diagram
  • Peroxisome proliferators
  • Proteome maps

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