Automating and streamlining inference of function of plant ESTs within a data analysis system

Elizabeth Shoop; John Carlis; Ernest F. Retzel

Automating and streamlining inference of function of plant ESTs within a data analysis system

Elizabeth Shoop, John Carlis, Ernest F. Retzel

Computer Science and Engineering

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Abstract

Automated sequencing of partial DNA clones as expressed sequence tags and similarity searches of these ESTs against public DNAs and protein sequence databases is becoming an accepted method for identifying genes of any given species. The objective in doing this analysis is to determine ways to make ESTs sequencing projects more efficient and enhance the functionality of a system that was developed for the storage and analysis of EST sequence data. This system will make use of graphical user interfaces to automate the task of EST editing, similarity searching and storage of multiple ESTs into an object oriented data management system.

Original language	English (US)
Title of host publication	Proceedings of the Hawaii International Conference on System Sciences
Editors	Jay F. Nunamaker, Ralph H.Jr. Sprague
Publisher	Publ by IEEE
Pages	47-48
Number of pages	2
Volume	5
ISBN (Print)	0818650907
State	Published - Jan 1 1995
Event	Proceedings of the 27th Hawaii International Conference on System Sciences (HICSS-27). Part 4 (of 5) - Wailea, HI, USA Duration: Jan 4 1994 → Jan 7 1994

Other

Other	Proceedings of the 27th Hawaii International Conference on System Sciences (HICSS-27). Part 4 (of 5)
City	Wailea, HI, USA
Period	1/4/94 → 1/7/94

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Automating and streamlining inference of function of plant ESTs within a data analysis system. / Shoop, Elizabeth; Carlis, John; Retzel, Ernest F.
Proceedings of the Hawaii International Conference on System Sciences. ed. / Jay F. Nunamaker; Ralph H.Jr. Sprague. Vol. 5 Publ by IEEE, 1995. p. 47-48.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Shoop, E, Carlis, J & Retzel, EF 1995, Automating and streamlining inference of function of plant ESTs within a data analysis system. in JF Nunamaker & RHJ Sprague (eds), Proceedings of the Hawaii International Conference on System Sciences. vol. 5, Publ by IEEE, pp. 47-48, Proceedings of the 27th Hawaii International Conference on System Sciences (HICSS-27). Part 4 (of 5), Wailea, HI, USA, 1/4/94.

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N2 - Automated sequencing of partial DNA clones as expressed sequence tags and similarity searches of these ESTs against public DNAs and protein sequence databases is becoming an accepted method for identifying genes of any given species. The objective in doing this analysis is to determine ways to make ESTs sequencing projects more efficient and enhance the functionality of a system that was developed for the storage and analysis of EST sequence data. This system will make use of graphical user interfaces to automate the task of EST editing, similarity searching and storage of multiple ESTs into an object oriented data management system.

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Automating and streamlining inference of function of plant ESTs within a data analysis system

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