TY - GEN
T1 - Asynchronous computation with molecular reactions
AU - Jiang, Hua
AU - Riedel, Marc
AU - Parhi, Keshab K
PY - 2011/12/1
Y1 - 2011/12/1
N2 - Mass-action kinetics of chemical reaction networks (CRNs) is powerful to describe computations through transfers of chemical concentrations. Here we present methods for asynchronously implementing digital signal processing (DSP) operations such as filtering with CRNs. We first review an implementation of DSP operations using molecular reactions based on a three-phase transfer scheme. This is an example of a locally asynchronous, globally synchronous implementation. We then present a fully asynchronous method that transfers signals based on absence of other signals. We illustrate our methodology with the design of finite impulse response (FIR) filters. The computation is exact and independent of specific reaction rates. Although conceptual for the time being, the proposed methodology has potential applications in domains of synthetic biology such as biochemical sensing and drug delivery.
AB - Mass-action kinetics of chemical reaction networks (CRNs) is powerful to describe computations through transfers of chemical concentrations. Here we present methods for asynchronously implementing digital signal processing (DSP) operations such as filtering with CRNs. We first review an implementation of DSP operations using molecular reactions based on a three-phase transfer scheme. This is an example of a locally asynchronous, globally synchronous implementation. We then present a fully asynchronous method that transfers signals based on absence of other signals. We illustrate our methodology with the design of finite impulse response (FIR) filters. The computation is exact and independent of specific reaction rates. Although conceptual for the time being, the proposed methodology has potential applications in domains of synthetic biology such as biochemical sensing and drug delivery.
UR - http://www.scopus.com/inward/record.url?scp=84861309404&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84861309404&partnerID=8YFLogxK
U2 - 10.1109/ACSSC.2011.6190049
DO - 10.1109/ACSSC.2011.6190049
M3 - Conference contribution
AN - SCOPUS:84861309404
SN - 9781467303231
T3 - Conference Record - Asilomar Conference on Signals, Systems and Computers
SP - 493
EP - 497
BT - Conference Record of the 45th Asilomar Conference on Signals, Systems and Computers, ASILOMAR 2011
T2 - 45th Asilomar Conference on Signals, Systems and Computers, ASILOMAR 2011
Y2 - 6 November 2011 through 9 November 2011
ER -