APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data

Keyphrases

• 3' End 100%
• 3′-untranslated Region (3′-UTR) 100%
• Alternative Polyadenylation 100%
• Analyzing Power 4%
• Bioinformatics pipeline 9%
• Biological Condition 4%
• Cleavage Site 4%
• Computational pipeline 4%
• Eukaryotic Genomes 4%
• False-positive Identification 4%
• Freely Available 4%
• Gene Annotation 4%
• Gene Expression 4%
• Genome Annotation 4%
• Graph Representation 4%
• High-resolution 4%
• Incomplete Annotation 4%
• MicroRNA 4%
• Mouse Embryonic Fibroblasts 4%
• Polyadenylation Signal 4%
• Polyadenylation Sites 9%
• Post-transcriptional Level 4%
• Potential Alternatives 4%
• Pre-mRNA Processing 4%
• Python 3 4%
• Quantitative PCR 4%
• Read Coverage 23%
• Region Annotation 4%
• RNA Sequencing (RNA-seq) 100%
• RNA Transcripts 4%
• RNA-binding Protein 4%
• RNA-seq Data 4%
• RNA-seq Datasets 4%
• RNA-seq Reads 4%
• Scan Detection 100%
• Short Reads 9%
• Significant Events 4%
• Source Code 4%
• Specific Events 4%
• Transcriptome-wide 4%
• User Manual 4%
• User-specific 4%

Biochemistry, Genetics and Molecular Biology

• Fibroblast 4%
• Gene Expression 4%
• Genome Annotation 4%
• Isoform 4%
• Messenger RNA 8%
• MicroRNA 4%
• Mouse 4%
• Polyadenylation 100%
• Precursor mRNA 4%
• Real-Time Polymerase Chain Reaction 4%
• RNA Processing 4%
• RNA Sequencing 100%
• RNA-binding Protein 4%
• Transcriptome 4%
• Untranslated Region 100%