Analysis of order preserving genes biclusters

Alain B. Tchagang, Ahmed H. Tewfik, Amy P Skubitz

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Abstract

In this paper, we describe an approach for finding all order preserving genes biclusters from a set of DNA microarray experimental data that combines the algorithm that finds biclusters with constant values on columns developed in one of our previous study with an adaptive gene expression level quantization procedure. All the biclusters discovered with the proposed methodology have no imperfections and, the complexity of the algorithm is shown to be lower than that of previous approaches. Application of the method to ovarian cancer data seems to reveal significant local pattern.

Original languageEnglish (US)
Title of host publication2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006
Pages101-102
Number of pages2
DOIs
StatePublished - Dec 1 2006
Event2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006 - College Station, TX, United States
Duration: May 28 2006May 30 2006

Publication series

Name2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006

Other

Other2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006
CountryUnited States
CityCollege Station, TX
Period5/28/065/30/06

Fingerprint

Gene Order
Genes
Gene
Ovarian Cancer
DNA Microarray
Imperfections
Microarrays
Microarray Data
Oligonucleotide Array Sequence Analysis
Gene expression
Ovarian Neoplasms
Gene Expression
Quantization
DNA
Experimental Data
Defects
Methodology

Cite this

Tchagang, A. B., Tewfik, A. H., & Skubitz, A. P. (2006). Analysis of order preserving genes biclusters. In 2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006 (pp. 101-102). [4161797] (2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006). https://doi.org/10.1109/GENSIPS.2006.353176

Analysis of order preserving genes biclusters. / Tchagang, Alain B.; Tewfik, Ahmed H.; Skubitz, Amy P.

2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006. 2006. p. 101-102 4161797 (2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tchagang, AB, Tewfik, AH & Skubitz, AP 2006, Analysis of order preserving genes biclusters. in 2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006., 4161797, 2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006, pp. 101-102, 2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006, College Station, TX, United States, 5/28/06. https://doi.org/10.1109/GENSIPS.2006.353176
Tchagang AB, Tewfik AH, Skubitz AP. Analysis of order preserving genes biclusters. In 2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006. 2006. p. 101-102. 4161797. (2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006). https://doi.org/10.1109/GENSIPS.2006.353176
Tchagang, Alain B. ; Tewfik, Ahmed H. ; Skubitz, Amy P. / Analysis of order preserving genes biclusters. 2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006. 2006. pp. 101-102 (2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006).
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