Analysis of order preserving genes biclusters

Alain B. Tchagang, Ahmed H. Tewfik, Amy P.N. Skubitz

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Abstract

In this paper, we describe an approach for finding all order preserving genes biclusters from a set of DNA microarray experimental data that combines the algorithm that finds biclusters with constant values on columns developed in one of our previous study with an adaptive gene expression level quantization procedure. All the biclusters discovered with the proposed methodology have no imperfections and, the complexity of the algorithm is shown to be lower than that of previous approaches. Application of the method to ovarian cancer data seems to reveal significant local pattern.

Original languageEnglish (US)
Title of host publication2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006
Pages101-102
Number of pages2
DOIs
StatePublished - Dec 1 2006
Event2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006 - College Station, TX, United States
Duration: May 28 2006May 30 2006

Publication series

Name2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006

Other

Other2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006
CountryUnited States
CityCollege Station, TX
Period5/28/065/30/06

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    Tchagang, A. B., Tewfik, A. H., & Skubitz, A. P. N. (2006). Analysis of order preserving genes biclusters. In 2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006 (pp. 101-102). [4161797] (2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006). https://doi.org/10.1109/GENSIPS.2006.353176