Analysis of expressed sequence tags from Gibberella zeae (anamorph Fusarium graminearum)

Frances Trail, Jin Rong Xu, Phillip San Miguel, Robert G. Halgren, H. Corby Kistler

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107 Scopus citations

Abstract

Gibberella zeae is a broad host range pathogen that infects many crop plants, including wheat and barley, and causes head blight and rot diseases throughout the world. To better understand fungal development and pathogenicity, we have generated 7996 ESTs from three cDNA libraries. Two libraries were generated from carbon-(C-) and nitrogen- (N-) starved mycelia and one library was generated from cultures of maturing perithecia (P). In other fungal pathogens, starvation conditions have been shown to act as cues to induce infection-related gene expression. To assign putative function to cDNAs, sequences were initially assembled using StackPack. The estimated total number of genes identified from the three EST databases was 2110: 1088 contigs and 1022 singleton sequences. These 2110 sequences were compared to a yeast protein sequence reference set and to the GenBank nonredundant database using BLASTX. Based on presumptive gene function identified by this process, we found that the two starved cultures had similar, but not identical, patterns of gene expression, whereas the developmental cultures were distinct in their pattern of expression. Of the three libraries, the perithecium library had the greatest percentage (46%) of ESTS falling into the "unclassified" category. Homologues of some known fungal virulence or pathogenicity factors were found primarily in the N- and C-libraries. Comparisons also were made with ESTs from the related fungi, Neurospora crassa and Magnaporthe grisea and the genomic sequence of N. crassa.

Original languageEnglish (US)
Pages (from-to)187-197
Number of pages11
JournalFungal Genetics and Biology
Volume38
Issue number2
DOIs
StatePublished - Mar 2003

Bibliographical note

Funding Information:
We thank Olin Anderson for his support of this work, particularly during its inception and Shiaoman Chao and Olin Anderson for managing the sequencing of the perithecium library at the Genetic Resources Conservation Program, University of California, Davis. We thank Curt Wilkerson for his helpful advice and suggestions throughout the functional analysis of the ESTs. We are indebted to Anne E. Plovanich-Jones for guidance in applying statistics to the functional analysis. Marlene Cameron generously contributed her time to help with the figures. We appreciated the thoughtful suggestions of an anonymous reviewer. This work was funded by a grant from the USDA Wheat and Barley Scab Initiative (F.T., H.C.K., and J.-R.X.) and the Michigan Agricultural Experiment Station.

Keywords

  • Ascus
  • Deoxynivalenol
  • Expressed sequence tags
  • Fusarium graminearum
  • Gibberella zeae
  • Mycotoxin
  • Pathogenicity
  • Perithecia
  • Virulence
  • Zearalenone

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