TY - JOUR
T1 - Analysis of biomarker data
T2 - Logs, odds ratios, and receiver operating characteristic curves
AU - Grund, Birgit
AU - Sabin, Caroline
PY - 2010/11
Y1 - 2010/11
N2 - Purpose of Review: We discuss two data analysis issues for studies that use binary clinical outcomes (whether or not an event occurred): the choice of an appropriate scale and transformation when biomarkers are evaluated as explanatory factors in logistic regression and assessing the ability of biomarkers to improve prediction accuracy for event risk. Recent Findings: Biomarkers with skewed distributions should be transformed before they are included as continuous covariates in logistic regression models. The utility of new biomarkers may be assessed by measuring the improvement in predicting event risk after adding the biomarkers to an existing model. The area under the receiver operating characteristic (ROC) curve (C-statistic) is often cited; it was developed for a different purpose, however, and may not address the clinically relevant questions. Measures of risk reclassification and risk prediction accuracy may be more appropriate. Summary: The appropriate analysis of biomarkers depends on the research question. Odds ratios obtained from logistic regression describe associations of biomarkers with clinical events; failure to accurately transform the markers, however, may result in misleading estimates. Although the C-statistic is often used to assess the ability of new biomarkers to improve the prediction of event risk, other measures may be more suitable.
AB - Purpose of Review: We discuss two data analysis issues for studies that use binary clinical outcomes (whether or not an event occurred): the choice of an appropriate scale and transformation when biomarkers are evaluated as explanatory factors in logistic regression and assessing the ability of biomarkers to improve prediction accuracy for event risk. Recent Findings: Biomarkers with skewed distributions should be transformed before they are included as continuous covariates in logistic regression models. The utility of new biomarkers may be assessed by measuring the improvement in predicting event risk after adding the biomarkers to an existing model. The area under the receiver operating characteristic (ROC) curve (C-statistic) is often cited; it was developed for a different purpose, however, and may not address the clinically relevant questions. Measures of risk reclassification and risk prediction accuracy may be more appropriate. Summary: The appropriate analysis of biomarkers depends on the research question. Odds ratios obtained from logistic regression describe associations of biomarkers with clinical events; failure to accurately transform the markers, however, may result in misleading estimates. Although the C-statistic is often used to assess the ability of new biomarkers to improve the prediction of event risk, other measures may be more suitable.
KW - Biomarker analysis
KW - C-statistic
KW - odds ratio
KW - receiver operating characteristic curve
KW - risk prediction accuracy
UR - http://www.scopus.com/inward/record.url?scp=77958550314&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=77958550314&partnerID=8YFLogxK
U2 - 10.1097/COH.0b013e32833ed742
DO - 10.1097/COH.0b013e32833ed742
M3 - Review article
C2 - 20978390
AN - SCOPUS:77958550314
SN - 1746-630X
VL - 5
SP - 473
EP - 479
JO - Current Opinion in HIV and AIDS
JF - Current Opinion in HIV and AIDS
IS - 6
ER -