Alternative transposition generates new chimeric genes and segmental duplications at the maize p1 locus

Dafang Wang, Chuanhe Yu, Tao Zuo, Jianbo Zhang, David F. Weber, Thomas Peterson

Research output: Contribution to journalArticlepeer-review

11 Scopus citations


The maize Ac/Ds transposon family was the first transposable element system identified and characterized by Barbara McClintock. Ac/Ds transposons belong to the hAT family of class II DNA transposons. We and others have shown that Ac/Ds elements can undergo a process of alternative transposition in which the Ac/Ds transposase acts on the termini of two separate, nearby transposons. Because these termini are present in different elements, alternative transposition can generate a variety of genome alterations such as inversions, duplications, deletions, and translocations. Moreover, Ac/Ds elements transpose preferentially into genic regions, suggesting that structural changes arising from alternative transposition may potentially generate chimeric genes at the rearrangement breakpoints. Here we identified and characterized 11 independent cases of gene fusion induced by Ac alternative transposition. In each case, a functional chimeric gene was created by fusion of two linked, paralogous genes; moreover, each event was associated with duplication of the ~ 70-kb segment located between the two paralogs. An extant gene in the maize B73 genome that contains an internal duplication apparently generated by an alternative transposition event was also identified. Our study demonstrates that alternative transposition-induced duplications may be a source for spontaneous creation of diverse genome structures and novel genes in maize.

Original languageEnglish (US)
Pages (from-to)925-935
Number of pages11
Issue number3
StatePublished - Nov 2015
Externally publishedYes

Bibliographical note

Publisher Copyright:
© 2015 by the Genetics Society of America.


  • Ac/Ds alternative transposition
  • Chimeric gene
  • Exon shuffling
  • Segmental duplication
  • Translocation


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