A substrate channel in the nitrogenase MoFe protein

Brett M. Barney, Michael G. Yurth, Patricia C. Dos Santos, Dennis R. Dean, Lance C. Seefeldt

Research output: Contribution to journalArticlepeer-review

37 Scopus citations


Nitrogenase catalyzes the six electron/six proton reduction of N 2 to two ammonia molecules at a complex organometallocluster called "FeMo cofactor." This cofactor is buried within the α-subunit of the MoFe protein, with no obvious access for substrates. Examination of high-resolution X-ray crystal structures of MoFe proteins from several organisms has revealed the existence of a water-filled channel that extends from the solvent-exposed surface to a specific face of FeMo cofactor. This channel could provide a pathway for substrate and product access to the active site. In the present work, we examine this possibility by substituting four different amino acids that line the channel with other residues and analyze the impact of these substitutions on substrate reduction kinetic parameters. Each of the MoFe protein variants was purified and kinetic parameters were established for the reduction of the substrates N2, acetylene, azide, and propyne. For each MoFe protein, V max values for the different substrates were found to be nearly unchanged when compared with the values for the wild-type MoFe protein, indicating that electron delivery to the active site is not compromised by the various substitutions. In contrast, the K m values for these substrates were found to increase significantly (up to 22-fold) in some of the MoFe protein variants compared with the wild-type MoFe protein values. Given that each of the amino acids that were substituted is remote from the active site, these results are consistent with the water-filled channel functioning as a substrate channel in the MoFe protein.

Original languageEnglish (US)
Pages (from-to)1015-1022
Number of pages8
JournalJournal of Biological Inorganic Chemistry
Issue number7
StatePublished - 2009

Bibliographical note

Funding Information:
Acknowledgment This work was supported by a grant from the National Institutes of Health (GM59087).


  • Cofactor
  • Enzyme kinetics
  • Iron-sulfur cluster
  • Site-directed mutagenesis


Dive into the research topics of 'A substrate channel in the nitrogenase MoFe protein'. Together they form a unique fingerprint.

Cite this