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  • James R Johnson
2020

Activity of imipenem-relebactam against carbapenem-resistant Escherichia coli isolates from the United States in relation to clonal background, resistance genes, coresistance, and region

Johnston, B. D., Thuras, P., Porter, S. B., Anacker, M., VonBank, B., Vagnone, P. S., Witwer, M., Castanheira, M. & Johnson, J. R., May 2020, In : Antimicrobial agents and chemotherapy. 64, 5, e02408-19.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats

Kidsley, A. K., O'Dea, M., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Saputra, S., Jordan, D., Johnson, J. R., Gordon, D., Turni, C., Djordjevic, S. P., Abraham, S. & Trott, D. J., Jun 2020, In : Veterinary Microbiology. 245, 108685.

Research output: Contribution to journalArticle

Infectious Pneumorachis Due to Clostridium septicum

Wongboonsin, J., Duran, A. & Johnson, J. R., Jan 1 2020, (Accepted/In press) In : Journal of general internal medicine.

Research output: Contribution to journalComment/debate

Molecularly defined extraintestinal pathogenic Escherichia coli status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among E. coli ST131 isolates

Merino, I., Porter, S. B., Johnston, B., Clabots, C., Thuras, P., Ruiz-Garbajosa, P., Cantón, R. & Johnson, J. R., Jan 1 2020, In : Virulence. 11, 1, p. 327-336 10 p.

Research output: Contribution to journalArticle

Open Access
2019

Accessory traits and phylogenetic background predict Escherichia coli extraintestinal virulence better than does ecological source

Johnson, J. R., Johnston, B. D., Porter, S., Thuras, P., Aziz, M. & Price, L. B., Jan 1 2019, In : Journal of Infectious Diseases. 219, 1, p. 121-132 12 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
4 Scopus citations

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection

Marsh, K. J., Mundy, L., Holter, J. J. & Johnson, J. R., Dec 2019, In : Diagnostic Microbiology and Infectious Disease. 95, 4, 114874.

Research output: Contribution to journalArticle

Open Access

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: A prospective study using whole-genome sequencing

Coussement, J., Argudín, M. A., Heinrichs, A., Racapé, J., de Mendonça, R., Nienhaus, L., Le Moine, A., Roisin, S., Dodémont, M., Jacobs, F., Abramowicz, D., Johnston, B. D., Johnson, J. R. & Denis, O., Jan 1 2019, In : Nephrology Dialysis Transplantation. 34, 5, p. 878-885 8 p.

Research output: Contribution to journalArticle

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation

Xu, A., Scullen, O. J., Sheen, S., Johnson, J. R. & Sommers, C. H., Dec 2019, In : Food Microbiology. 84, 103264.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Phylogenomic Analysis of Extraintestinal Pathogenic Escherichia coli Sequence Type 1193, an Emerging Multidrug-Resistant Clonal Group

Johnson, T., Elnekave, E., Miller, E. A., Munoz-Aguayo, J., Figueroa, C. F., Johnston, B. D., Nielson, D. W., Logue, C. M. & Johnson, J. R., Jan 2019, In : Antimicrobial agents and chemotherapy. 63, 1, e01913-18.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Prevalence of asymptomatic bacteriuria among kidney transplant recipients beyond two months post-transplant: A multicenter, prospective, cross-sectional study

Coussement, J., Scemla, A., Hougardy, J. M., Sberro-Soussan, R., Amrouche, L., Catalano, C., Johnson, J. R. & Abramowicz, D., Jan 1 2019, In : PloS one. 14, 9, e0221820.

Research output: Contribution to journalArticle

Open Access

Rapid and Extensive Expansion in the United States of a New Multidrug-resistant Escherichia coli Clonal Group, Sequence Type 1193

Tchesnokova, V. L., Rechkina, E., Larson, L., Ferrier, K., Weaver, J. L., Schroeder, D. W., She, R., Butler-Wu, S. M., Aguero-Rosenfeld, M. E., Zerr, D., Fang, F. C., Ralston, J., Riddell, K., Scholes, D., Weissman, S., Parker, K., Spellberg, B., Johnson, J. R. & Sokurenko, E. V., Jan 7 2019, In : Clinical Infectious Diseases. 68, 2, p. 334-337 4 p.

Research output: Contribution to journalArticle

Open Access
17 Scopus citations

Rapid emergence, subsidence, and molecular detection of Escherichia coli sequence type 1193-fimH64, a new disseminated multidrug-resistant commensal and extraintestinal pathogen

Johnson, J. R., Johnston, B. D., Porter, S. B., Clabots, C., Bender, T. L., Thuras, P., Trott, D. J., Cobbold, R., Mollinger, J., Ferrieri, P., Drawz, S. & Banerjee, R., May 2019, In : Journal of clinical microbiology. 57, 5, e01664-18.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
Open Access

Survey of US wastewater for carbapenem-resistant Enterobacteriaceae

Hoelle, J., Johnson, J. R., Johnston, B. D., Kinkle, B., Boczek, L., Ryu, H. & Hayes, S., Apr 1 2019, In : Journal of Water and Health. 17, 2, p. 219-226 8 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Thermal inactivation of extraintestinal pathogenic Escherichia coli suspended in ground chicken meat

Xu, A., Chuang, S., Scullen, O. J., Huang, L., Sheen, S., Sheen, L. Y., Johnson, J. R. & Sommers, C. H., Oct 2019, In : Food Control. 104, p. 269-277 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

The uropathogenic Escherichia coli subclone sequence type 131-H30 is responsible for most antibiotic prescription errors at an urgent care clinic

Tchesnokova, V., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Feb 15 2019, In : Clinical Infectious Diseases. 68, 5, p. 781-787 7 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
2018
Open Access
1 Scopus citations

Acute pyelonephritis in adults

Johnson, J. R. & Russo, T. A., Jan 4 2018, In : New England Journal of Medicine. 378, 1, p. 48-59 12 p.

Research output: Contribution to journalArticle

16 Scopus citations

Alpha-toxin contributes to biofilm formation among Staphylococcus aureus wound isolates

Anderson, M. J., Schaaf, E., Breshears, L. M., Wallis, H. W., Johnson, J. R., Tkaczyk, C., Sellman, B. R., Sun, J. & Peterson, M. L., Apr 2018, In : Toxins. 10, 4, 157.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Asymptomatic Bacteriuria

Johnson, J. R., May 17 2018, In : Clinical Infectious Diseases. 66, 11, p. 1816-1817 2 p.

Research output: Contribution to journalLetter

Open Access

Clinical and molecular correlates of Escherichia coli bloodstream infection from two geographically diverse centers in Rochester, Minnesota, and Singapore

Mendis, S. M., Vasoo, S., Johnston, B. D., Porter, S. B., Cunningham, S. A., Menon, S. R., Teng, C. B., De, P. P., Patel, R., Johnson, J. R. & Banerjee, R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00937.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Confusion and Bacteriuria in Long-Term Care Facility Residents

Johnson, J. R., Jun 2018, In : Journal of the American Geriatrics Society. 66, 6, 1 p.

Research output: Contribution to journalLetter

Open Access

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization

Kline, S. E., Sanstead, E. C., Johnson, J. R. & Kulasingam, S. L., Nov 1 2018, In : Infection Control and Hospital Epidemiology. 39, 11, p. 1340-1346 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Delirium in hospitalized older adults

Johnson, J. R., Jan 4 2018, In : New England Journal of Medicine. 378, 1, 1 p.

Research output: Contribution to journalLetter

4 Scopus citations

Draft genome sequences of five neonatal meningitis-causing Escherichia coli isolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

Xu, A., Johnson, J. R., Sheen, S. & Sommers, C., Apr 1 2018, In : Genome Announcements. 6, 16, e00091-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Draft genomic sequencing of six potential extraintestinal pathogenic Escherichia coli isolates from retail chicken meat

Xu, A., Johnson, J. R., Sheen, S., Needleman, D. S. & Sommers, C., May 1 2018, In : Genome Announcements. 6, 21, e00449-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
16 Scopus citations

Escherichia coli ST131-H22 as a foodborne uropathogen

Liu, C. M., Stegger, M., Aziz, M., Johnson, T. J., Waits, K., Nordstrom, L., Gauld, L., Weaver, B., Rolland, D., Statham, S., Horwinski, J., Sariya, S., Davis, G. S., Sokurenko, E., Keim, P., Johnson, J. R. & Price, L. B., Jul 1 2018, In : mBio. 9, 4, e00470-18.

Research output: Contribution to journalArticle

Open Access
24 Scopus citations

Extensive genetic commonality among wildlife, wastewater, community, and nosocomial isolates of Escherichia coli sequence type 131 (H30R1 and H30Rx Subclones) That Carry blaCTX-M-27 or blaCTX-M-15

Jamborova, I., Johnston, B. D., Papousek, I., Kachlikova, K., Micenkova, L., Clabots, C., Skalova, A., Chudejova, K., Dolejska, M., Literak, I. & Johnson, J. R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00519.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Identification of biomarkers for differentiation of hypervirulent klebsiella pneumoniae from classical K. pneumoniae

Russo, T. A., Olson, R., Fang, C. T., Stoesser, N., Miller, M., MacDonald, U., Hutson, A., Barker, J. H., La Hoz, R. M., Johnson, J. R., Backer, M., Bajwa, R., Catanzaro, A. T., Crook, D., De Almeida, K., Fierer, J., Greenberg, D. E., Klevay, M., Patel, P., Ratner, A. & 2 others, Wang, J. T. & Zola, J., Sep 2018, In : Journal of clinical microbiology. 56, 9, e00776.

Research output: Contribution to journalArticle

Open Access
37 Scopus citations

Identifying antibiotic- resistant infections

Drekonja, D. M. & Johnson, J. R., Jun 1 2018, In : Health Affairs. 37, 6, 1 p.

Research output: Contribution to journalLetter

Molecular Epidemiology of Extraintestinal Pathogenic Escherichia coli

Johnson, J. R. & Russo, T. A., Apr 1 2018, In : EcoSal Plus. 8, 1

Research output: Contribution to journalReview article

3 Scopus citations

Prevalence and Molecular Characteristics of Clostridium difficile in Retail Meats, Food-Producing and Companion Animals, and Humans in Minnesota

Shaughnessy, M. K., Snider, T., Sepulveda, R., Boxrud, D., Cebelinski, E., Jawahir, S., Holzbauer, S., Johnston, B. D., Smith, K., Bender, J. B., Thuras, P., Diez-Gonzalez, F. & Johnson, J. R., Oct 1 2018, In : Journal of food protection. 81, 10, p. 1635-1642 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Resident physician knowledge of urine testing and treatment over four years

Andrews, S. L., Abbo, L. M., Johnson, J. R., Kuskowski, M. A., Shukla, B. S. & Drekonja, D. M., May 1 2018, In : Infection Control and Hospital Epidemiology. 39, 5, p. 616-618 3 p.

Research output: Contribution to journalArticle

2017

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Mar 2017, In : PloS one. 12, 3, e0174132.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
Open Access
4 Scopus citations

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R., Apr 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Contribution to journalArticle

6 Scopus citations
Open Access
7 Scopus citations

Definition of complicated urinary tract infection

Johnson, J. R., Feb 15 2017, In : Clinical Infectious Diseases. 64, 4, 1 p.

Research output: Contribution to journalLetter

Open Access
2 Scopus citations

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Open Access
1 Scopus citations

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00732.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Epidemiology and characteristics of Escherichia coli sequence type 131 (ST131) from long-term care facility residents colonized intestinally with fluoroquinolone-resistant Escherichia coli

Han, J. H., Garrigan, C., Johnston, B., Nachamkin, I., Clabots, C., Bilker, W. B., Santana, E., Tolomeo, P., Maslow, J., Myers, J., Carson, L., Lautenbach, E. & Johnson, J. R., Mar 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 3, p. 275-280 6 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations