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2019

7-methylation of chenodeoxycholic acid derivatives yields a substantial increase in TGR5 receptor potency

Nakhi, A., Mcdermott, C. M., Stoltz, K. L., John, K., Hawkinson, J. E., Ambrose, E. A., Khoruts, A., Sadowsky, M. J. & Dosa, P. I., Jul 25 2019, In : Journal of Medicinal Chemistry. 62, 14, p. 6824-6830 7 p.

Research output: Contribution to journalArticle

Chenodeoxycholic Acid
Methylation
Inflammatory Bowel Diseases
Hydroxyl Radical
Type 2 Diabetes Mellitus

A microfluidic platform for the simultaneous quantification of methanogen populations in anaerobic digestion processes

Mathai, P. P., Dunn, H. M., Venkiteshwaran, K., Zitomer, D. H., Maki, J. S., Ishii, S. & Sadowsky, M. J., May 1 2019, In : Environmental microbiology. 21, 5, p. 1798-1808 11 p.

Research output: Contribution to journalArticle

methanogens
Microfluidics
anaerobic digestion
anaerobic digesters
Digestion
2 Citations (Scopus)

Antibiotic-induced Disruption of Intestinal Microbiota Contributes to Failure of Vertical Sleeve Gastrectomy

Jahansouz, C., Staley, C. M., Kizy, S., Xu, H., Hertzel, A. M., Coryell, J., Singroy, S., Hamilton, M. J., DuRand, M., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S., Jun 1 2019, In : Annals of surgery. 269, 6, p. 1092-1100 9 p.

Research output: Contribution to journalArticle

Gastrectomy
Anti-Bacterial Agents
Homeostasis
Ceftriaxone
Microbiota
3 Citations (Scopus)

A pilot study of fecal bile acid and microbiota profiles in inflammatory bowel disease and primary sclerosing cholangitis

Vaughn, B. P., Kaiser, T., Staley, C. M., Hamilton, M. J., Reich, J., Graiziger, C., Singroy, S., Kabage, A. J., Sadowsky, M. J. & Khoruts, A., Jan 1 2019, In : Clinical and Experimental Gastroenterology. 12, p. 9-19 11 p.

Research output: Contribution to journalArticle

Open Access
Sclerosing Cholangitis
Microbiota
Bile Acids and Salts
Inflammatory Bowel Diseases
Vancomycin
1 Citation (Scopus)
Pathogens
Escherichia coli
Lakes
pathogen
vegetation

Breastmilk and NICU surfaces are potential sources of fungi for infant mycobiomes

Heisel, T., Nyaribo, L., Sadowsky, M. J. & Gale, C. A., Jul 1 2019, In : Fungal Genetics and Biology. 128, p. 29-35 7 p.

Research output: Contribution to journalArticle

Neonatal Intensive Care Units
Fungi
Fungal DNA
Candida
Saccharomyces
5 Citations (Scopus)

Comparative decay of sewage-associated marker genes in beach water and sediment in a subtropical region

Ahmed, W., Zhang, Q., Kozak, S., Beale, D., Gyawali, P., Sadowsky, M. J. & Simpson, S., Feb 1 2019, In : Water Research. 149, p. 511-521 11 p.

Research output: Contribution to journalArticle

subtropical region
Sewage
Beaches
Sediments
beach

Compositional and temporal stability of fecal taxon libraries for use with SourceTracker in sub-tropical catchments

O'Dea, C., Zhang, Q., Staley, C. M., Masters, N., Kuballa, A., Fisher, P., Veal, C., Stratton, H., Sadowsky, M. J., Ahmed, W. & Katouli, M., Nov 15 2019, In : Water Research. 165, 114967.

Research output: Contribution to journalArticle

Catchments
catchment
Wastewater
Genes
wastewater

Corrigendum to “Comparative decay of sewage-associated marker genes in beach water and sediment in a subtropical region” (Water Research (2019) 149 (511–521), (S0043135418309059), (10.1016/j.watres.2018.10.088))

Ahmed, W., Zhang, Q., Kozak, S., Beale, D., Gyawali, P., Sadowsky, M. J. & Simpson, S., Aug 1 2019, In : Water Research. 159, p. 539-540 2 p.

Research output: Contribution to journalComment/debate

subtropical region
Sewage
Beaches
Sediments
beach

Cultivar and phosphorus effects on switchgrass yield and rhizosphere microbial diversity

Sawyer, A., Staley, C. M., Lamb, J., Sheaffer, C. C., Kaiser, T., Gutknecht, J. L., Sadowsky, M. J. & Rosen, C. J., Feb 15 2019, In : Applied Microbiology and Biotechnology. 103, 4, p. 1973-1987 15 p.

Research output: Contribution to journalArticle

Panicum
Rhizosphere
Phosphorus
Soil
Biomass

Denitrifying bacteria active in woodchip bioreactors at low-temperature conditions

Jang, J., Anderson, E. L., Venterea, R. T., Sadowsky, M. J., Rosen, C. J., Feyereisen, G. W. & Ishii, S., Jan 1 2019, In : Frontiers in Microbiology. 10, APR, 635.

Research output: Contribution to journalArticle

Open Access
Bioreactors
Bacteria
Cellulomonas
Temperature
Nitrates

Dietary Factors in Sulfur Metabolism and Pathogenesis of Ulcerative Colitis

Teigen, L. M., Geng, Z., Sadowsky, M. J., Vaughn, B. P., Hamilton, M. J. & Khoruts, A., Apr 25 2019, In : Nutrients. 11, 4

Research output: Contribution to journalReview article

Open Access
colitis
Ulcerative Colitis
Sulfur
sulfur
pathogenesis

Durable Long-Term Bacterial Engraftment following Encapsulated Fecal Microbiota Transplantation To Treat Clostridium difficile Infection

Staley, C. M., Kaiser, T., Vaughn, B. P., Graiziger, C., Hamilton, M. J., Kabage, A. J., Khoruts, A. & Sadowsky, M. J., Jul 23 2019, In : mBio. 10, 4

Research output: Contribution to journalArticle

Open Access
Clostridium Infections
Clostridium difficile
Tissue Donors
Microbiota
Bacteroidetes

Editorial: Alternative Therapeutic Approaches for Multidrug Resistant Clostridium difficile

Janvilisri, T., Sorg, J. A., Scaria, J. & Sadowsky, M. J., Jan 1 2019, In : Frontiers in Microbiology. 10, MAY, 1216.

Research output: Contribution to journalEditorial

Open Access
Clostridium difficile
Multiple Drug Resistance
Complementary Therapies
Anti-Bacterial Agents
Therapeutics

Endophytic Bacterial Communities Associated with Roots and Leaves of Plants Growing in Chilean Extreme Environments

Zhang, Q., Acuña, J. J., Inostroza, N. G., Mora, M. L., Radic, S., Sadowsky, M. J. & Jorquera, M. A., Dec 1 2019, In : Scientific reports. 9, 1, 4950.

Research output: Contribution to journalArticle

Open Access
Plant Roots
Plant Leaves
Endophytes
Gaultheria
Bacillaceae

Identification and characterization of two peroxidases from Lichtheimia corymbifera

Abd El-Rahim, W. M., Abdel Azeiz, A. Z., Moawad, H. & Sadowsky, M. J., Mar 1 2019, In : Biocatalysis and Agricultural Biotechnology. 18, 100995.

Research output: Contribution to journalArticle

Azo Compounds
azo dyes
Peroxidases
Azo dyes
peroxidases
2 Citations (Scopus)

Impact of long-term grazing exclusion on soil microbial community composition and nutrient availability

Wang, Z., Zhang, Q., Staley, C. M., Gao, H., Ishii, S., Wei, X., Liu, J., Cheng, J., Hao, M. & Sadowsky, M. J., Feb 1 2019, In : Biology and Fertility of Soils. 55, 2, p. 121-134 14 p.

Research output: Contribution to journalArticle

nutrient availability
community composition
microbial communities
microbial community
Soil
agricultural soils
agricultural soil
microbial communities
microbial community
sampling
1 Citation (Scopus)

Influence of Library Composition on SourceTracker Predictions for Community-Based Microbial Source Tracking

Brown, C. M., Mathai, P. P., Loesekann, T., Staley, C. M. & Sadowsky, M. J., Jan 2 2019, In : Environmental Science and Technology. 53, 1, p. 60-68 9 p.

Research output: Contribution to journalArticle

Contamination
prediction
Chemical analysis
microbial community
community structure

Influence of short-term changes in dietary sulfur on the relative abundances of intestinal sulfate-reducing bacteria

Dostal Webster, A., Staley, C. M., Hamilton, M. J., Huang, M., Fryxell, K., Erickson, R., Kabage, A. J., Sadowsky, M. J. & Khoruts, A., Jul 4 2019, In : Gut Microbes. 10, 4, p. 447-457 11 p.

Research output: Contribution to journalArticle

Sulfur
Bilophila
Sulfates
Desulfovibrio
Bacteria
2 Citations (Scopus)

Intermittent flooding of organic-rich soil promotes the formation of denitrification hot moments and hot spots

Tomasek, A. A., Hondzo, M., Kozarek, J., Staley, C. M., Wang, P., Lurndahl, N. & Sadowsky, M. J., Jan 1 2019, In : Ecosphere. 10, 1, e02549.

Research output: Contribution to journalArticle

soil formation
denitrification
organic soil
flooding
connectivity
Organic Agriculture
Rhizobium
dry beans
Phaseolus
organic production

Room temperature growth of salmonella enterica serovar saintpaul in fresh Mexican salsa

Kirkland, C., Black, E., Forghani, F., Pomraning, A., Sadowsky, M. J. & Diez-Gonzalez, F., Jan 1 2019, In : Journal of food protection. 82, 1, p. 102-108 7 p.

Research output: Contribution to journalArticle

Salmonella Saintpaul
Salmonella enterica
Salmonella
ambient temperature
lime juice
2 Citations (Scopus)

Signal disruption leads to changes in bacterial community population

Schwab, M., Bergonzi, C., Sakkos, J., Staley, C. M., Zhang, Q., Sadowsky, M. J., Aksan, A. & Elias, M. H., Jan 1 2019, In : Frontiers in Microbiology. 10, MAR, 611.

Research output: Contribution to journalArticle

Open Access
Biofilms
Quorum Sensing
Bioreactors
Acyl-Butyrolactones
Population

Synergy between quantitative microbial source tracking (qMST) and quantitative microbial risk assessment (QMRA): A review and prospectus

Zhang, Q., Gallard, J., Wu, B., Harwood, V. J., Sadowsky, M. J., Hamilton, K. A. & Ahmed, W., Sep 1 2019, In : Environment International. 130, 104703.

Research output: Contribution to journalReview article

Open Access
risk assessment
gene
pathogen
health risk
microorganism
deposit feeder
Deposits
Aromatic Hydrocarbons
Degradation
Sediments
2018
10 Citations (Scopus)

Application of SourceTracker for Accurate Identification of Fecal Pollution in Recreational Freshwater: A Double-Blinded Study

Staley, C., Kaiser, T., Lobos, A., Ahmed, W., Harwood, V. J., Brown, C. M. & Sadowsky, M. J., Apr 3 2018, In : Environmental Science and Technology. 52, 7, p. 4207-4217 11 p.

Research output: Contribution to journalArticle

Pollution
pollution
Contamination
Sewage
horse

Bacillus megaterium strains derived from water and soil exhibit differential responses to the herbicide mesotrione

Dobrzanski, T., Gravina, F., Steckling, B., Olchanheski, L. R., Sprenger, R. F., Espírito Santo, B. C., Galvão, C. W., Reche, P. M., Prestes, R. A., Pileggi, S. A. V., Campos, F. R., Azevedo, R. A., Sadowsky, M. J., Beltrame, F. L. & Pileggi, M., Apr 1 2018, In : PloS one. 13, 4, e0196166.

Research output: Contribution to journalArticle

mesotrione
Bacillus megaterium
Herbicides
Bacilli
Soil
1 Citation (Scopus)

CLOUD: A non-parametric detection test for microbiome outliers

Montassier, E., Al-Ghalith, G. A., Hillmann, B., Viskocil, K. C., Kabage, A. J., McKinlay, C. E., Sadowsky, M. J., Khoruts, A. & Knights, D., Aug 6 2018, In : Microbiome. 6, 1, 137.

Research output: Contribution to journalArticle

Microbiota
Dysbiosis
Healthy Volunteers
Clostridium difficile
Immune System Diseases
fermenters
Rumen
Fermentation
rumen
fermentation

Complete genome sequence of Sinorhizobium meliloti bacteriophage HMSP1-Susan

Fleagle, B., Imamovic, A., Toledo, S., Couves, M., Jensen, A., Vang, M., Steevens, A., Young, N. D., Sadowsky, M. J. & Martinez-Vaz, B. M., May 1 2018, In : Genome Announcements. 6, 18, e01450-17.

Research output: Contribution to journalArticle

Sinorhizobium meliloti
Bacteriophages
Genome
Base Composition
Viruses
3 Citations (Scopus)

Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF

Dale, J. L., Beckman, K. B., Willett, J. L. E., Nilson, J. L., Palani, N. P., Baller, J. A., Hauge, A., Gohl, D. M., Erickson, R., Manias, D. A., Sadowsky, M. J. & Dunny, G. M., Sep 1 2018, In : mSystems. 3, 5, e0006218.

Research output: Contribution to journalArticle

Open Access
Functional analysis
Enterococcus faecalis
Functional Analysis
Mutant
mutation
antibiotic resistance
drain
bacterium
gene
water
11 Citations (Scopus)

Current understanding of microbiota- and dietary-therapies for treating inflammatory bowel disease

Eom, T., Kim, Y. S., Choi, C. H., Sadowsky, M. J. & Unno, T., Mar 1 2018, In : Journal of Microbiology. 56, 3, p. 189-198 10 p.

Research output: Contribution to journalReview article

Microbiota
Inflammatory Bowel Diseases
Dysbiosis
Therapeutics
Bacteroidetes
1 Citation (Scopus)

Decay of sewage-associated bacterial communities in fresh and marine environmental waters and sediment

Ahmed, W., Staley, C. M., Kaiser, T., Sadowsky, M. J., Kozak, S., Beale, D. & Simpson, S., Aug 1 2018, In : Applied Microbiology and Biotechnology. 102, 16, p. 7159-7170 12 p.

Research output: Contribution to journalArticle

Sewage
Water
Water Quality
Queensland
Fresh Water
1 Citation (Scopus)

DNA template dilution impacts amplicon sequencing-based estimates of soil fungal diversity

Castle, S. C., Song, Z., Gohl, D. M., Gutknecht, J. L., Rosen, C. J., Sadowsky, M. J., Samac, D. A. & Kinkel, L. L., Jan 1 2018, In : Phytobiomes Journal. 2, 2, p. 100-107 8 p.

Research output: Contribution to journalArticle

Open Access
Microbiota
dilution
Soil
DNA
polymerase chain reaction
11 Citations (Scopus)

Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice

Le Bastard, Q., Ward, T., Sidiropoulos, D., Hillmann, B. M., Chun, C. L., Sadowsky, M. J., Knights, D. & Montassier, E., Dec 1 2018, In : Scientific reports. 8, 1, 6219.

Research output: Contribution to journalArticle

Dysbiosis
Anti-Bacterial Agents
Drug Therapy
Ampicillin
Clostridium Infections
1 Citation (Scopus)

Fecal pollution: new trends and challenges in microbial source tracking using next-generation sequencing

Unno, T., Staley, C. M., Brown, C. M., Han, D., Sadowsky, M. J. & Hur, H. G., Sep 1 2018, In : Environmental microbiology. 20, 9, p. 3132-3140 9 p.

Research output: Contribution to journalReview article

pollution
methodology
Libraries
Water
method
1 Citation (Scopus)

Genome-wide association analyses in the model rhizobium Ensifer meliloti

Epstein, B., Aboushanab, R., Shamseldin, A., Taylor, M. R., Guhlin, J., Burghardt, L., Nelson, M., Sadowsky, M. J. & Tiffin, P. L., Sep 1 2018, In : mSphere. 3, 5, e00386-18.

Research output: Contribution to journalArticle

Sinorhizobium meliloti
Genome-Wide Association Study
Genes
Linkage Disequilibrium
Bacteria
Rivers
Land use
river
Sampling
Turbidity
Metagenomics
Ecosystem
Microbiota
DNA Sequence Analysis
Technology
16 Citations (Scopus)

Precipitation influences pathogenic bacteria and antibiotic resistance gene abundance in storm drain outfalls in coastal sub-tropical waters

Ahmed, W., Zhang, Q., Lobos, A., Senkbeil, J., Sadowsky, M. J., Harwood, V. J., Saeidi, N., Marinoni, O. & Ishii, S., Jul 1 2018, In : Environment International. 116, p. 308-318 11 p.

Research output: Contribution to journalArticle

antibiotic resistance
drain
bacterium
gene
sewage
6 Citations (Scopus)

Predicting recurrence of Clostridium difficile infection following encapsulated fecal microbiota transplantation

Staley, C. M., Kaiser, T., Vaughn, B. P., Graiziger, C. T., Hamilton, M. J., Rehman, T. U., Song, K., Khoruts, A. & Sadowsky, M. J., Sep 18 2018, In : Microbiome. 6, 1, 166.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Recurrence
Tissue Donors
Microbiota

Putative nitrogen-fixing bacteria associated with the rhizosphere and root endosphere of wheat plants grown in an andisol from southern Chile

Rilling, J. I., Acuña, J. J., Sadowsky, M. J. & Jorquera, M. A., Nov 20 2018, In : Frontiers in Microbiology. 9, NOV

Research output: Contribution to journalArticle

Rhizosphere
Chile
Triticum
Bacteria
rRNA Genes
16 Citations (Scopus)

Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage

Ahmed, W., Hamilton, K. A., Lobos, A., Hughes, B., Staley, C., Sadowsky, M. J. & Harwood, V. J., Aug 1 2018, In : Environment International. 117, p. 243-249 7 p.

Research output: Contribution to journalArticle

risk assessment
sewage
water
health risk
pathogen
1 Citation (Scopus)

Role of rhizobacteria in phytoremediation of metal-impacted sites

Aboushanab, R., El-Sheekh, M. M. & Sadowsky, M. J., May 25 2018, Emerging and Eco-Friendly Approaches for Waste Management. Springer Singapore, p. 299-328 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

phytoremediation
rhizobacterium
metal
Metals
Bacteria
4 Citations (Scopus)

Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach

Beale, D. J., Crosswell, J., Karpe, A. V., Metcalfe, S. S., Morrison, P. D., Staley, C., Ahmed, W., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L., Aug 1 2018, In : Science of the Total Environment. 631-632, p. 1328-1341 14 p.

Research output: Contribution to journalArticle

marine sediment
Sediments
wet season
Nutrients
community composition
7 Citations (Scopus)
Bacteria
Melilotus
Nitrogen Fixation
Rhizobium
Molecular Evolution
1 Citation (Scopus)
North America
macrophyte
microbial community
Water
Lakes
39 Citations (Scopus)

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

Smillie, C. S., Sauk, J., Gevers, D., Friedman, J., Sung, J., Youngster, I., Hohmann, E. L., Staley, C. M., Khoruts, A., Sadowsky, M. J., Allegretti, J. R., Smith, M. B., Xavier, R. J. & Alm, E. J., Feb 14 2018, In : Cell Host and Microbe. 23, 2, p. 229-240.e5

Research output: Contribution to journalArticle

Clostridium difficile
Microbiota
Tissue Donors
Bacteria
Clostridium Infections