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2019
1 Citation (Scopus)

Accessory traits and phylogenetic background predict Escherichia coli extraintestinal virulence better than does ecological source

Johnson, J. R., Johnston, B. D., Porter, S., Thuras, P., Aziz, M. & Price, L. B., Jan 1 2019, In : Journal of Infectious Diseases. 219, 1, p. 121-132 12 p.

Research output: Contribution to journalArticle

Open Access
Virulence
Escherichia coli
Uropathogenic Escherichia coli
Capsules
Sepsis
2 Citations (Scopus)
Quinolones
Fluoroquinolones
DNA Topoisomerase IV
Mutation
Staphylococcus haemolyticus

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: a prospective study using whole-genome sequencing

Coussement, J., Argudín, M. A., Heinrichs, A., Racapé, J., de Mendonça, R., Nienhaus, L., Le Moine, A., Roisin, S., Dodémont, M., Jacobs, F., Abramowicz, D., Johnston, B. D., Johnson, J. R. & Denis, O., May 1 2019, In : Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 34, 5, p. 878-885 8 p.

Research output: Contribution to journalArticle

Bacteriuria
Pyelonephritis
Genome
Prospective Studies
Escherichia coli

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation

Xu, A., Scullen, O. J., Sheen, S., Johnson, J. R. & Sommers, C. H., Dec 1 2019, In : Food Microbiology. 84, 103264.

Research output: Contribution to journalArticle

Open Access
ground chicken meat
Shiga toxin-producing Escherichia coli
meningitis
Gamma Rays
uropathogenic Escherichia coli
4 Citations (Scopus)

Phylogenomic Analysis of Extraintestinal Pathogenic Escherichia coli Sequence Type 1193, an Emerging Multidrug-Resistant Clonal Group

Johnson, T., Elnekave, E., Miller, E. A., Munoz-Aguayo, J., Figueroa, C. F., Johnston, B. D., Nielson, D. W., Logue, C. M. & Johnson, J. R., Jan 1 2019, In : Antimicrobial agents and chemotherapy. 63, 1, e01913-18.

Research output: Contribution to journalArticle

Open Access
Phylogeny
Fluoroquinolones
Genome
Plasmids
F Factor
Methicillin Resistance
Veterans
Methicillin-Resistant Staphylococcus aureus
Staphylococcus aureus
7 Citations (Scopus)

Rapid and Extensive Expansion in the United States of a New Multidrug-resistant Escherichia coli Clonal Group, Sequence Type 1193

Tchesnokova, V. L., Rechkina, E., Larson, L., Ferrier, K., Weaver, J. L., Schroeder, D. W., She, R., Butler-Wu, S. M., Aguero-Rosenfeld, M. E., Zerr, D., Fang, F. C., Ralston, J., Riddell, K., Scholes, D., Weissman, S., Parker, K., Spellberg, B., Johnson, J. R. & Sokurenko, E. V., Jan 7 2019, In : Clinical Infectious Diseases. 68, 2, p. 334-337 4 p.

Research output: Contribution to journalArticle

Open Access
Fluoroquinolones
Escherichia coli
Sulfamethoxazole Drug Combination Trimethoprim
Tetracycline
Young Adult

Rapid emergence, subsidence, and molecular detection of Escherichia coli sequence type 1193-fimH64, a new disseminated multidrug-resistant commensal and extraintestinal pathogen

Johnson, J. R., Johnston, B. D., Porter, S. B., Clabots, C., Bender, T. L., Thuras, P., Trott, D. J., Cobbold, R., Mollinger, J., Ferrieri, P., Drawz, S. & Banerjee, R., May 1 2019, In : Journal of clinical microbiology. 57, 5, e01664-18.

Research output: Contribution to journalArticle

Fluoroquinolones
Veterans
Escherichia coli
Capsules
Virulence
Veterans
Escherichia coli
Delivery of Health Care
Patient-Centered Care
Wild Animals
1 Citation (Scopus)

Survey of US wastewater for carbapenem-resistant Enterobacteriaceae

Hoelle, J., Johnson, J. R., Johnston, B. D., Kinkle, B., Boczek, L., Ryu, H. & Hayes, S., Apr 1 2019, In : Journal of Water and Health. 17, 2, p. 219-226 8 p.

Research output: Contribution to journalArticle

Carbapenems
Enterobacteriaceae
Waste Water
antibiotics
Escherichia coli
1 Citation (Scopus)

Thermal inactivation of extraintestinal pathogenic Escherichia coli suspended in ground chicken meat

Xu, A., Chuang, S., Scullen, O. J., Huang, L., Sheen, S., Sheen, L. Y., Johnson, J. R. & Sommers, C. H., Oct 1 2019, In : Food Control. 104, p. 269-277 9 p.

Research output: Contribution to journalArticle

ground chicken meat
heat inactivation
Meat
Chickens
Hot Temperature
1 Citation (Scopus)

The uropathogenic Escherichia coli subclone sequence type 131-H30 is responsible for most antibiotic prescription errors at an urgent care clinic

Tchesnokova, V., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Feb 15 2019, In : Clinical Infectious Diseases. 68, 5, p. 781-787 7 p.

Research output: Contribution to journalArticle

Uropathogenic Escherichia coli
Ambulatory Care Facilities
Prescriptions
Anti-Bacterial Agents
Urinary Tract Infections
2018
Open Access
veterans
meropenem
Veterans
Escherichia coli
fluoroquinolones
13 Citations (Scopus)

Acute pyelonephritis in adults

Johnson, J. R. & Russo, T. A., Jan 4 2018, In : New England Journal of Medicine. 378, 1, p. 48-59 12 p.

Research output: Contribution to journalArticle

Flank Pain
Dysuria
Urinalysis
Pyelonephritis
Fluoroquinolones
2 Citations (Scopus)

Alpha-toxin contributes to biofilm formation among Staphylococcus aureus wound isolates

Anderson, M. J., Schaaf, E., Breshears, L. M., Wallis, H. W., Johnson, J. R., Tkaczyk, C., Sellman, B. R., Sun, J. & Peterson, M. L., Apr 1 2018, In : Toxins. 10, 4, 157.

Research output: Contribution to journalArticle

Open Access
Biofilms
Staphylococcus aureus
Wounds and Injuries
Methicillin-Resistant Staphylococcus aureus
Methicillin

Asymptomatic Bacteriuria

Johnson, J. R., May 17 2018, In : Clinical Infectious Diseases. 66, 11, p. 1816-1817 2 p.

Research output: Contribution to journalLetter

Bacteriuria
3 Citations (Scopus)

Clinical and molecular correlates of Escherichia coli bloodstream infection from two geographically diverse centers in Rochester, Minnesota, and Singapore

Mendis, S. M., Vasoo, S., Johnston, B. D., Porter, S. B., Cunningham, S. A., Menon, S. R., Teng, C. B., De, P. P., Patel, R., Johnson, J. R. & Banerjee, R., Oct 1 2018, In : Antimicrobial Agents and Chemotherapy. 62, 10, e00937.

Research output: Contribution to journalArticle

Escherichia coli Infections
Singapore
Bacteremia
Escherichia coli
Virulence

Confusion and Bacteriuria in Long-Term Care Facility Residents

Johnson, J. R., Jun 1 2018, In : Journal of the American Geriatrics Society. 66, 6, 1 p.

Research output: Contribution to journalLetter

Open Access
Bacteriuria
Long-Term Care

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 1 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

Cystitis
Urinary Tract Infections
Virulence
Sepsis
Escherichia coli
1 Citation (Scopus)

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization

Kline, S. E., Sanstead, E. C., Johnson, J. R. & Kulasingam, S. L., Nov 1 2018, In : Infection Control and Hospital Epidemiology. 39, 11, p. 1340-1346 7 p.

Research output: Contribution to journalArticle

Surgical Wound Infection
Cost-Benefit Analysis
Staphylococcus aureus
Standard of Care
Mupirocin
2 Citations (Scopus)

Delirium in hospitalized older adults

Johnson, J. R., Jan 4 2018, In : New England Journal of Medicine. 378, 1, 1 p.

Research output: Contribution to journalLetter

Delirium
Hospitalization
2 Citations (Scopus)

Draft genome sequences of five neonatal meningitis-causing Escherichia coli isolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

Xu, A., Johnson, J. R., Sheen, S. & Sommers, C., Apr 1 2018, In : Genome Announcements. 6, 16, e00091-18.

Research output: Contribution to journalArticle

Open Access
Escherichia coli Meningitis
Food Handling
Food Safety
Netherlands
Genome
2 Citations (Scopus)

Draft genomic sequencing of six potential extraintestinal pathogenic Escherichia coli isolates from retail chicken meat

Xu, A., Johnson, J. R., Sheen, S., Needleman, D. S. & Sommers, C., May 1 2018, In : Genome Announcements. 6, 21, e00449-18.

Research output: Contribution to journalArticle

Open Access
Meat Products
Food Safety
Meat
Chickens
Genome
10 Citations (Scopus)
urinary tract diseases
sepsis (infection)
chicken eggs
meningitis
chicken meat
9 Citations (Scopus)

Escherichia coli ST131-H22 as a foodborne uropathogen

Liu, C. M., Stegger, M., Aziz, M., Johnson, T., Waits, K., Nordstrom, L., Gauld, L., Weaver, B., Rolland, D., Statham, S., Horwinski, J., Sariya, S., Davis, G. S., Sokurenko, E., Keim, P., Johnson, J. R. & Price, L. B., Jul 1 2018, In : mBio. 9, 4, e00470-18.

Research output: Contribution to journalArticle

Escherichia coli
Meat
Poultry
Plasmids
Food
4 Citations (Scopus)

Extensive genetic commonality among wildlife, wastewater, community, and nosocomial isolates of Escherichia coli sequence type 131 (H30R1 and H30Rx Subclones) That Carry blaCTX-M-27 or blaCTX-M-15

Jamborova, I., Johnston, B. D., Papousek, I., Kachlikova, K., Micenkova, L., Clabots, C., Skalova, A., Chudejova, K., Dolejska, M., Literak, I. & Johnson, J. R., Oct 1 2018, In : Antimicrobial Agents and Chemotherapy. 62, 10, e00519.

Research output: Contribution to journalArticle

Open Access
Replicon
Community Hospital
Waste Water
Integrons
Electrophoresis
16 Citations (Scopus)

Identification of biomarkers for differentiation of hypervirulent klebsiella pneumoniae from classical K. pneumoniae

Russo, T. A., Olson, R., Fang, C. T., Stoesser, N., Miller, M., MacDonald, U., Hutson, A., Barker, J. H., La Hoz, R. M., Johnson, J. R., Backer, M., Bajwa, R., Catanzaro, A. T., Crook, D., De Almeida, K., Fierer, J., Greenberg, D. E., Klevay, M., Patel, P., Ratner, A. & 2 others, Wang, J. T. & Zola, J., Sep 1 2018, In : Journal of clinical microbiology. 56, 9, e00776.

Research output: Contribution to journalArticle

Klebsiella pneumoniae
Biomarkers
Plasmids
Klebsiella Infections
Genes

Identifying antibiotic- resistant infections

Drekonja, D. M. & Johnson, J. R., Jun 1 2018, In : Health Affairs. 37, 6, 1 p.

Research output: Contribution to journalLetter

Anti-Bacterial Agents
Infection

Molecular Epidemiology of Extraintestinal Pathogenic Escherichia coli

Johnson, J. R. & Russo, T. A., Apr 1 2018, In : EcoSal Plus. 8, 1

Research output: Contribution to journalReview article

Molecular Epidemiology
Virulence Factors
Epidemiologic Studies
Molecular Typing
Patient Selection
2 Citations (Scopus)
Soaps
Local Anti-Infective Agents
Disinfectants
Staphylococcus aureus
Randomized Controlled Trials

Resident physician knowledge of urine testing and treatment over four years

Andrews, S. L., Abbo, L. M., Johnson, J. R., Kuskowski, M. A., Shukla, B. S. & Drekonja, D. M., May 1 2018, In : Infection Control and Hospital Epidemiology. 39, 5, p. 616-618 3 p.

Research output: Contribution to journalArticle

Demography
Urine
Physicians
Therapeutics
2017
8 Citations (Scopus)

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Mar 1 2017, In : PloS one. 12, 3, e0174132.

Research output: Contribution to journalArticle

antibiotics
Anti-Bacterial Agents
Microbial Sensitivity Tests
Escherichia coli
urinary tract diseases
4 Citations (Scopus)
Pyuria
Bacteriuria
6 Citations (Scopus)

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R., Apr 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Contribution to journalArticle

beta-Lactamases
Escherichia coli
Military Personnel
Health Services
Phenotype
5 Citations (Scopus)
Transesophageal Echocardiography
Veterans
Bacteremia
Endocarditis
Echocardiography
2 Citations (Scopus)

Definition of complicated urinary tract infection

Johnson, J. R., Feb 15 2017, In : Clinical Infectious Diseases. 64, 4, 1 p.

Research output: Contribution to journalLetter

Urinary Tract Infections
1 Citation (Scopus)

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Pyelonephritis
Urinary Tract Infections
11 Citations (Scopus)

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M., Aug 1 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00732.

Research output: Contribution to journalArticle

Open Access
Fluoroquinolones
Cephalosporins
Escherichia coli
Virulence
Multiple Drug Resistance
4 Citations (Scopus)

Epidemiology and characteristics of Escherichia coli sequence type 131 (ST131) from long-term care facility residents colonized intestinally with fluoroquinolone-resistant Escherichia coli

Han, J. H., Garrigan, C., Johnston, B. D., Nachamkin, I., Clabots, C., Bilker, W. B., Santana, E., Tolomeo, P., Maslow, J., Myers, J., Carson, L., Lautenbach, E. & Johnson, J. R., Mar 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 3, p. 275-280 6 p.

Research output: Contribution to journalArticle

Open Access
Fluoroquinolones
Long-Term Care
Epidemiology
Escherichia coli
Virulence Factors
22 Citations (Scopus)

Evaluation of Escherichia coli isolates from healthy chickens to determine their potential risk to poultry and human health

Stromberg, Z. R., Johnson, J. R., Fairbrother, J. M., Kilbourne, J., Van Goor, A., Curtiss, R. & Mellata, M., Jul 1 2017, In : PloS one. 12, 7, e0180599.

Research output: Contribution to journalArticle

Open Access
Poultry
Escherichia coli
human health
Chickens
poultry
7 Citations (Scopus)
Open Access
virulence
breasts
Chickens
Breast
Virulence
6 Citations (Scopus)

Fine-scale structure analysis shows epidemic patterns of clonal complex 95, a cosmopolitan Escherichia coli lineage responsible for extraintestinal infection

Gordon, D. M., Geyik, S., Clermont, O., O'Brien, C. L., Huang, S., Abayasekara, C., Rajesh, A., Kennedy, K., Collignon, P., Pavli, P., Rodriguez, C., Johnston, B. D., Johnson, J. R., Decousser, J. W. & Denamur, E., May 1 2017, In : mSphere. 2, 3, e00168-17.

Research output: Contribution to journalArticle

Open Access
Escherichia coli
Infection
Virulence
Pandemics
Microbial Drug Resistance
4 Citations (Scopus)

Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains

Stephens, C. M., Adams-Sapper, S., Sekhon, M., Johnson, J. R. & Riley, L. W., Mar 1 2017, In : mSphere. 2, 2, e00390-16.

Research output: Contribution to journalArticle

Microbial Drug Resistance
Statistical Factor Analysis
Plasmids
Genome
Anti-Bacterial Agents
7 Citations (Scopus)

Genomic analysis of multidrug-resistant Escherichia coli from North Carolina community hospitals: Ongoing circulation of CTX-M-producing ST131-H30Rx and ST131-H30R1 Strains

Kanamori, H., Parobek, C. M., Juliano, J. J., Johnson, J. R., Johnston, B. D., Johnson, T., Weber, D. J., Rutala, W. A. & Anderson, D. J., Aug 1 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00912.

Research output: Contribution to journalArticle

Open Access
Community Hospital
Escherichia coli
Genome
Fluoroquinolones
Virulence
29 Citations (Scopus)

Gram-negative bacterial infections: Research priorities, accomplishments, and future directions of the Antibacterial Resistance Leadership Group

Doi, Y., Bonomo, R. A., Hooper, D. C., Kaye, K. S., Johnson, J. R., Clancy, C. J., Thaden, J. T., Stryjewski, M. E. & Van Duin, D., Jan 1 2017, In : Clinical Infectious Diseases. 64, p. S30-S35

Research output: Contribution to journalArticle

Open Access
Gram-Negative Bacterial Infections
Enterobacteriaceae
Carbapenems
Research
Fosfomycin
4 Citations (Scopus)

Inactivation of transcriptional regulators during withinhousehold evolution of Escherichia coli

Kisiela, D. I., Radey, M., Paul, S., Porter, S., Polukhina, K., Tchesnokova, V., Shevchenko, S., Chan, D., Aziz, M., Johnson, T. J., Price, L. B., Johnson, J. R. & Sokurenko, E. V., Jul 1 2017, In : Journal of Bacteriology. 199, 13, e00036-17.

Research output: Contribution to journalArticle

Open Access
Escherichia coli
Mutation
Cystitis
Pyelonephritis
Urine
3 Citations (Scopus)
Open Access
surface water
Escherichia coli
phylogenetics
electrokinesis
gel
12 Citations (Scopus)

Rapid and specific detection of the Escherichia coli sequence type 648 complex within phylogroup F

Johnson, J. R., Johnston, B. D. & Gordon, D. M., Apr 1 2017, In : Journal of Clinical Microbiology. 55, 4, p. 1116-1121 6 p.

Research output: Contribution to journalArticle

Open Access
Multiplex Polymerase Chain Reaction
Alleles
Escherichia coli
Confidence Intervals
Multilocus Sequence Typing
17 Citations (Scopus)
Open Access
Escherichia coli Infections
Fluoroquinolones
Pandemics
beta-Lactamases
Virulence

To the editor

Johnson, J. R., Feb 9 2017, In : New England Journal of Medicine. 376, 6, 1 p.

Research output: Contribution to journalLetter