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2017
7 Citations

A community multi-omics approach towards the assessment of surface water quality in an urban river system

Beale, D. J., Karpe, A. V., Ahmed, W., Cook, S., Morrison, P. D., Staley, C., Sadowsky, M. J. & Palombo, E. A. Mar 14 2017 In : International journal of environmental research and public health. 14, 3, 303

Research output: Contribution to journalArticle

Water Quality
Rivers
Ecosystem
Mass Spectrometry
Actinomycetales
2 Citations
Estuaries
Lakes
Bacteria
Animals
Throughput
3 Citations

Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia

Ahmed, W., Staley, C., Sidhu, J., Sadowsky, M. & Toze, S. Feb 1 2017 In : Applied Microbiology and Biotechnology. 101, 3, p. 1253-1266 14 p.

Research output: Contribution to journalArticle

Waste Water
Bacteria
Arcobacter
Genes
Pseudomonas
6 Citations

Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks

Ahmed, W., Staley, C., Hamilton, K. A., Beale, D. J., Sadowsky, M. J., Toze, S. & Haas, C. N. Jan 15 2017 In : Science of the Total Environment. 576, p. 326-334 9 p.

Research output: Contribution to journalArticle

Water tanks
rainwater
Roofs
roof
Bacteria
1 Citations

A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef

Beale, D. J., Crosswell, J., Karpe, A. V., Ahmed, W., Williams, M., Morrison, P. D., Metcalfe, S., Staley, C., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L. Dec 31 2017 In : Science of the Total Environment. 609, p. 842-853 12 p.

Research output: Contribution to journalArticle

Reefs
sterol
coastal sediment
Sterols
Polycyclic aromatic hydrocarbons
4 Citations

Analysis of gut microbiota–An ever changing landscape

Sadowsky, M. J., Staley, C., Heiner, C., Hall, R., Kelly, C. R., Brandt, L. & Khoruts, A. May 4 2017 In : Gut Microbes. 8, 3, p. 268-275 8 p.

Research output: Contribution to journalArticle

Technology
Clostridium Infections
Clostridium difficile
Microbiota
Metagenomics
6 Citations

Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease

Khanna, S., Vazquez-Baeza, Y., González, A., Weiss, S., Schmidt, B., Muñiz-Pedrogo, D. A., Rainey, J. F., Kammer, P., Nelson, H., Sadowsky, M., Khoruts, A., Farrugia, S. L., Knight, R., Pardi, D. S. & Kashyap, P. C. Jan 1 2017 In : Microbiome. 5, 1, 55

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Ecology
Inflammatory Bowel Diseases
Infection
2 Citations

Community dynamics drive punctuated engraftment of the fecal microbiome following transplantation using freeze-dried, encapsulated fecal microbiota

Staley, C., Vaughn, B. P., Graiziger, C. T., Singroy, S., Hamilton, M. J., Yao, D., Chen, C., Khoruts, A. & Sadowsky, M. J. May 4 2017 In : Gut Microbes. 8, 3, p. 276-288 13 p.

Research output: Contribution to journalArticle

Microbiota
Clostridium Infections
Clostridium difficile
Transplantation
Tissue Donors

Competition between introduced Bradyrhizobium japonicum strains and indigenous bradyrhizobia in Minnesota organic farming systems

Abou-Shanab, R. A. I., Wongphatcharachai, M., Sheaffer, C. C., Orf, J. C. & Sadowsky, M. J. Nov 1 2017 In : Symbiosis. 73, 3, p. 155-163 9 p.

Research output: Contribution to journalArticle

Organic Agriculture
Bradyrhizobiaceae
Bradyrhizobium
Bradyrhizobium japonicum
organic production
Triclosan
Waste Water
Pseudomonas aeruginosa
Genome
Base Composition
Intestinal Diseases
Clostridium Infections
Clostridium difficile
Complementary Therapies
Hemostasis
2 Citations

Differential impacts of land-based sources of pollution on the microbiota of southeast Florida coral reefs

Staley, C., Kaiser, T., Gidley, M. L., Enochs, I. C., Jones, P. R., Goodwin, K. D., Sinigalliano, C. D., Sadowsky, M. J. & Chun, C. L. May 1 2017 In : Applied and environmental microbiology. 83, 10, e03378-16

Research output: Contribution to journalArticle

Coral Reefs
Microbiota
coral reefs
coral reef
reef

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

Staley, C., Ferrieri, A. P., Tfaily, M. M., Cui, Y., Chu, R. K., Wang, P., Shaw, J. B., Ansong, C. K., Brewer, H., Norbeck, A. D., Markillie, M., do Amaral, F., Tuleski, T., Pellizzaro, T., Agtuca, B., Ferrieri, R., Tringe, S. G., Paša-Tolić, L., Stacey, G. & Sadowsky, M. J. Jun 24 2017 In : Microbiome. 5, 1, 1 p.

Research output: Contribution to journalArticle

Soil Microbiology
Brachypodium
Bacterial Physiological Phenomena
Arabidopsis Proteins
16S Ribosomal RNA
antibiotic resistance
Wastewater
Genes
Anti-Bacterial Agents
Soils
2 Citations

Environmental drivers of denitrification rates and denitrifying gene abundances in channels and riparian areas

Tomasek, A., Kozarek, J. L., Hondzo, M., Lurndahl, N., Sadowsky, M. J., Wang, P. & Staley, C. Aug 1 2017 In : Water Resources Research. 53, 8, p. 6523-6538 16 p.

Research output: Contribution to journalArticle

denitrification
gene
intensive agriculture
climatic region
rate
7 Citations

Environmental Escherichia coli: ecology and public health implications—a review

Jang, J., Hur, H. G., Sadowsky, M. J., Byappanahalli, M. N., Yan, T. & Ishii, S. Sep 1 2017 In : Journal of Applied Microbiology. 123, 3, p. 570-581 12 p.

Research output: Contribution to journalReview article

Ecology
Public Health
Escherichia coli
Population Genetics
Bacteria

Factors influencing the Salmonella internalization into seedpods and whole plants of Arachis hypogaea (L.)

Rossbach, J. D., Fink, R. C., Sadowsky, M. J., Tong, C. & Diez-Gonzalez, F. Sep 1 2017 In : Food Microbiology. 66, p. 184-189 6 p.

Research output: Contribution to journalArticle

Arachis hypogaea
Salmonella
Soil
peanuts
Salmonella Typhimurium

Genes and gut bacteria involved in luminal butyrate reduction caused by diet and loperamide

Hwang, N., Eom, T., Gupta, S. K., Jeong, S. Y., Jeong, D. Y., Kim, Y. S., Lee, J. H., Sadowsky, M. J. & Unno, T. Dec 1 2017 In : Genes. 8, 12, 350

Research output: Contribution to journalArticle

Loperamide
Butyrates
Diet
Bacteria
Genes
2 Citations
Clostridium Infections
Clostridium difficile
Urinary Tract Infections
Gentamicins
Aminoglycosides
Denitrification
Hyphomicrobiaceae
Burkholderiaceae
Cytophagaceae
Nitrates

Influence of heavy metals on rhizosphere microbial communities of Siam weed (Chromolaena odorata (L.)) using a 16S rRNA gene amplicon sequencing approach

Ruangdech, T., Wongphatcharachai, M., Staley, C., Sadowsky, M. J. & Sajjaphan, K. Jun 1 2017 In : Agriculture and Natural Resources. 51, 3, p. 137-141 5 p.

Research output: Contribution to journalArticle

Chromolaena
Chromolaena odorata
Rhizosphere
Thailand
Heavy Metals
16 Citations

Interaction of gut microbiota with bile acid metabolism and its influence on disease states

Staley, C., Weingarden, A. R., Khoruts, A. & Sadowsky, M. J. Jan 1 2017 In : Applied Microbiology and Biotechnology. 101, 1, p. 47-64 18 p.

Research output: Contribution to journalReview article

Bile Acids and Salts
Biotransformation
Clostridium Infections
Gastrointestinal Microbiome
Clostridium difficile
2 Citations

Metabolic Interference of sod gene mutations on catalase activity in Escherichia coli exposed to Gramoxone® (paraquat) herbicide

Gravina, F., Dobrzanski, T., Olchanheski, L. R., Galvão, C. W., Reche, P. M., Pileggi, S. A., Azevedo, R. A., Sadowsky, M. J. & Pileggi, M. May 1 2017 In : Ecotoxicology and Environmental Safety. 139, p. 89-96 8 p.

Research output: Contribution to journalArticle

Paraquat
Herbicides
Catalase
Escherichia coli
Superoxide Dismutase
47 Citations

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: An open-label study

Kang, D. W., Adams, J. B., Gregory, A. C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., McDonough-Means, S., Pollard, E. L., Roux, S., Sadowsky, M. J., Lipson, K. S., Sullivan, M. B., Caporaso, J. G. & Krajmalnik-Brown, R. Jan 1 2017 In : Microbiome. 5, 1, 10

Research output: Contribution to journalArticle

Microbiota
Autistic Disorder
Ecosystem
Therapeutics
Autism Spectrum Disorder

Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands

Romão, D., Staley, C., Ferreira, F., Rodrigues, R., Sabino, R., Veríssimo, C., Wang, P., Sadowsky, M. & Brandão, J. Jun 15 2017 In : Marine Pollution Bulletin. 119, 1, p. 351-358 8 p.

Research output: Contribution to journalArticle

prokaryote
Beaches
prokaryotic cells
Fungi
beaches
7 Citations

Nitrification gene ratio and free ammonia explain nitrite and nitrous oxide production in urea-amended soils

Breuillin-Sessoms, F., Venterea, R. T., Sadowsky, M. J., Coulter, J. A., Clough, T. J. & Wang, P. Aug 1 2017 In : Soil Biology and Biochemistry. 111, p. 143-153 11 p.

Research output: Contribution to journalArticle

Nitrification
Nitrous Oxide
Nitrites
nitrous oxide
Ammonia
1 Citations

Novel microbial assemblages dominate weathered sulfidebearing rock from copper-nickel deposits in the Duluth Complex, Minnesota, USA

Jones, D. S., Lapakko, K. A., Wenz, Z. J., Olson, M. C., Roepke, E. W., Sadowsky, M. J., Novak, P. J. & Bailey, J. V. Aug 1 2017 In : Applied and environmental microbiology. 83, 16, e00909-17

Research output: Contribution to journalArticle

Sulfides
Nickel
nickel
Copper
mine waste
1 Citations

Optimization of conditions for decolorization of azo-based textile dyes by multiple fungal species

Abd El-Rahim, W. M., Moawad, H., Abdel Azeiz, A. Z. & Sadowsky, M. J. Oct 20 2017 In : Journal of Biotechnology. 260, p. 11-17 7 p.

Research output: Contribution to journalArticle

Azo Compounds
Textiles
Coloring Agents
Laccase
Fungi
surface water
Escherichia coli
phylogenetics
electrokinesis
gel
3 Citations

Recent changes to the classification of symbiotic, nitrogen-fixing, legume-associating bacteria: a review

Shamseldin, A., Abdelkhalek, A. & Sadowsky, M. J. Feb 1 2017 In : Symbiosis. 71, 2, p. 91-109 19 p.

Research output: Contribution to journalReview article

Fabaceae
Nitrogen
legumes
Rhizobium
taxonomy
2 Citations

Sleeve gastrectomy drives persistent shifts in the gut microbiome

Jahansouz, C., Staley, C., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S. Jun 1 2017 In : Surgery for Obesity and Related Diseases. 13, 6, p. 916-924 9 p.

Research output: Contribution to journalArticle

Gastrectomy
Gastrointestinal Microbiome
Weights and Measures
Obese Mice
Bariatric Surgery
5 Citations

Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning

Staley, C., Kaiser, T., Beura, L. K., Hamilton, M. J., Weingarden, A. R., Bobr, A., Kang, J., Masopust, D., Sadowsky, M. J. & Khoruts, A. Aug 1 2017 In : Microbiome. 5, 1, 1 p.

Research output: Contribution to journalArticle

Germ-Free Life
Microbiota
Feces
Oral Administration
Animal Models
2 Citations

Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula

Moll, K. M., Zhou, P., Ramaraj, T., Fajardo, D., Devitt, N. P., Sadowsky, M. J., Stupar, R. M., Tiffin, P., Miller, J. R., Young, N. D., Silverstein, K. A. T. & Mudge, J. Aug 4 2017 In : BMC Genomics. 18, 1, 578

Research output: Contribution to journalArticle

Medicago truncatula
Fabaceae
Technology
Genome
Plant Genome
12 Citations

Successful Resolution of Recurrent Clostridium difficile Infection using Freeze-Dried, Encapsulated Fecal Microbiota; Pragmatic Cohort Study

Staley, C., Hamilton, M. J., Vaughn, B. P., Graiziger, C. T., Newman, K. M., Kabage, A. J., Sadowsky, M. J. & Khoruts, A. Jun 1 2017 In : American Journal of Gastroenterology. 112, 6, p. 940-947 8 p.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Microbiota
Cohort Studies
Capsules
6 Citations

Synthesis and Biological Evaluation of Bile Acid Analogues Inhibitory to Clostridium difficile Spore Germination

Stoltz, K. L., Erickson, R., Staley, C., Weingarden, A. R., Romens, E., Steer, C. J., Khoruts, A., Sadowsky, M. J. & Dosa, P. I. Apr 27 2017 In : Journal of Medicinal Chemistry. 60, 8, p. 3451-3471 21 p.

Research output: Contribution to journalArticle

Clostridium difficile
Germination
Spores
Bile Acids and Salts
Clostridium Infections
1 Citations
intestinal microorganisms
microbial communities
microbial community
diet
digestive system
4 Citations
Rhizobium
Symbiosis
mutualism
rhizobacterium
symbiont
2 Citations
Sinorhizobium
Medicago
Symbiosis
symbiosis
Sinorhizobium meliloti

Virulence and biodegradation potential of dynamic microbial communities associated with decaying Cladophora in Great Lakes

Chun, C. L., Peller, J. R., Shively, D., Byappanahalli, M. N., Whitman, R. L., Staley, C., Zhang, Q., Ishii, S. & Sadowsky, M. J. Jan 1 2017 In : Science of the Total Environment. 574, p. 872-880 9 p.

Research output: Contribution to journalArticle

virulence
Biodegradation
Lakes
microbial community
biodegradation
2016
8 Citations
microbial communities
microbial community
surface water
matrix
public health
8 Citations
cover crop
Fertilizers
soil cover
nutrient cycling
Farms
1 Citations

Bacterial biogeography influenced by shelf-basin exchange in the Arctic surface sediment at the Chukchi Borderland

Han, D., Nam, S. I., Ha, H. K., Kim, H., Sadowsky, M. J., Lee, Y. K. & Hur, H. G. Feb 1 2016 In : Environmental microbiology. 18, 2, p. 668-678 11 p.

Research output: Contribution to journalArticle

biogeography
Oceans and Seas
Arctic region
Seawater
basins
16 Citations

Beach sand and the potential for infectious disease transmission: Observations and recommendations

Solo-Gabriele, H. M. , Harwood, V. J. , Kay, D. , Fujioka, R. S. , Sadowsky, M. J. , Whitman, R. L. , Wither, A. , Caniça, M. , Carvalho da Fonseca, R. , Duarte, A. , Edge, T. A. , Gargaté, M. J. , Gunde-Cimerman, N. , Hagen, F. , McLellan, S. L. , Nogueira da Silva, A. , Novak Babič, M. , Prada, S. , Rodrigues, R. , Romão, D. & 9 others Sabino, R., Samson, R. A., Segal, E., Staley, C., Taylor, H. D., Veríssimo, C., Viegas, C., Barroso, H. & Brandão, J. C. Jan 1 2016 In : Journal of the Marine Biological Association of the United Kingdom. 96, 1, p. 101-120 20 p.

Research output: Contribution to journalArticle

disease transmission
infectious disease
infectious diseases
beaches
beach
33 Citations

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J. Jan 1 2016 In : PLoS ONE. 11, 1, e0147210

Research output: Contribution to journalArticle

feces composition
Clostridium difficile
Clostridium
bile acids
Germination
15 Citations
Clostridium Infections
Clostridium difficile
Microbiota
Tissue Donors
Bacteria
5 Citations

Correlations between pathogen concentration and fecal indicator marker genes in beach environments

Zhang, Q., Eichmiller, J. J., Staley, C., Sadowsky, M. J. & Ishii, S. Dec 15 2016 In : Science of the Total Environment. 573, p. 826-830 5 p.

Research output: Contribution to journalArticle

Pathogens
Beaches
beach
pathogen
Genes
1 Citations
Medicago
Rhizobium
United States Department of Agriculture
Hot Temperature
Genome
91 Citations

Effect of fecal microbiota transplantation on recurrence in multiply recurrent clostridium difficile infection a randomized trial

Kelly, C. R., Khoruts, A., Staley, C., Sadowsky, M. J., Abd, M., Alani, M., Bakow, B., Curran, P., McKenney, J., Tisch, A., Reinert, S. E., MacHan, J. T. & Brandt, L. J. Nov 1 2016 In : Annals of Internal Medicine. 165, 9, p. 609-616 8 p.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Recurrence
Tissue Donors
Colonoscopy
7 Citations
Clostridium Infections
Clostridium difficile
households
pollution
infection
7 Citations

Environment shapes the fecal microbiome of invasive carp species

Eichmiller, J. J., Hamilton, M. J., Staley, C., Sadowsky, M. J. & Sorensen, P. W. Jan 1 2016 In : Microbiome. 4, 44

Research output: Contribution to journalArticle

Introduced Species
Carps
Microbiota
Fishes
Fusobacteria