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2017
4 Citations

A community multi-omics approach towards the assessment of surface water quality in an urban river system

Beale, D. J., Karpe, A. V., Ahmed, W., Cook, S., Morrison, P. D., Staley, C., Sadowsky, M. J. & Palombo, E. A. Mar 14 2017 In : International Journal of Environmental Research and Public Health. 14, 3, 303

Research output: Research - peer-reviewArticle

Water Quality
Rivers
Ecosystem
Mass Spectrometry
Water

A High-Throughput DNA-Sequencing Approach for Determining Sources of Fecal Bacteria in a Lake Superior Estuary

Brown, C. M., Staley, C., Wang, P., Dalzell, B., Chun, C. L. & Sadowsky, M. J. Aug 1 2017 In : Environmental Science and Technology. 51, 15, p. 8263-8271 9 p.

Research output: Research - peer-reviewArticle

estuary
DNA
lake
faecal bacterium
Estuaries
2 Citations

Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia

Ahmed, W., Staley, C., Sidhu, J., Sadowsky, M. & Toze, S. Feb 1 2017 In : Applied Microbiology and Biotechnology. 101, 3, p. 1253-1266 14 p.

Research output: Research - peer-reviewArticle

Waste Water
Bacteria
Genes
Arcobacter
Pseudomonas
4 Citations

Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks

Ahmed, W., Staley, C., Hamilton, K. A., Beale, D. J., Sadowsky, M. J., Toze, S. & Haas, C. N. Jan 15 2017 In : Science of the Total Environment. 576, p. 326-334 9 p.

Research output: Research - peer-reviewArticle

rainwater
roof
bacterium
water
Water tanks

A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef

Beale, D. J., Crosswell, J., Karpe, A. V., Ahmed, W., Williams, M., Morrison, P. D., Metcalfe, S., Staley, C., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L. Dec 31 2017 In : Science of the Total Environment. 609, p. 842-853 12 p.

Research output: Research - peer-reviewArticle

sterol
coastal sediment
marine sediment
reef
chemical
1 Citations

Analysis of gut microbiota–An ever changing landscape

Sadowsky, M. J., Staley, C., Heiner, C., Hall, R., Kelly, C. R., Brandt, L. & Khoruts, A. May 4 2017 In : Gut Microbes. 8, 3, p. 268-275 8 p.

Research output: Research - peer-reviewArticle

Technology
Gastrointestinal Microbiome
Clostridium Infections
Clostridium difficile
Microbiota
4 Citations

Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease

Khanna, S., Vazquez-Baeza, Y., González, A., Weiss, S., Schmidt, B., Muñiz-Pedrogo, D. A., Rainey, J. F., Kammer, P., Nelson, H., Sadowsky, M., Khoruts, A., Farrugia, S. L., Knight, R., Pardi, D. S. & Kashyap, P. C. Jan 1 2017 In : Microbiome. 5, 1, 55

Research output: Research - peer-reviewArticle

Clostridium Infections
Clostridium difficile
Ecology
Inflammatory Bowel Diseases
Infection
1 Citations

Community dynamics drive punctuated engraftment of the fecal microbiome following transplantation using freeze-dried, encapsulated fecal microbiota

Staley, C., Vaughn, B. P., Graiziger, C. T., Singroy, S., Hamilton, M. J., Yao, D., Chen, C., Khoruts, A. & Sadowsky, M. J. May 4 2017 In : Gut Microbes. 8, 3, p. 276-288 13 p.

Research output: Research - peer-reviewArticle

Microbiota
Transplantation
Fecal Microbiota Transplantation
Clostridium Infections
Clostridium difficile

Competition between introduced Bradyrhizobium japonicum strains and indigenous bradyrhizobia in Minnesota organic farming systems

Abou-Shanab, R. A. I., Wongphatcharachai, M., Sheaffer, C. C., Orf, J. C. & Sadowsky, M. J. Nov 1 2017 In : Symbiosis. 73, 3, p. 155-163 9 p.

Research output: Research - peer-reviewArticle

Bradyrhizobiaceae
Bradyrhizobium japonicum
organic production
farming systems
Organic Agriculture

Complete genome sequence of the triclosan- and multidrug-resistant Pseudomonas aeruginosa strain B10W isolated from municipal wastewater

Zhong, C., Nelson, M., Cao, G., Sadowsky, M. J. & Yan, T. Jan 1 2017 In : Genome Announcements. 5, 3, e01489-16

Research output: Research - peer-reviewArticle

Triclosan
Waste Water
Pseudomonas aeruginosa
Genome
Base Composition
Intestinal Diseases
Fecal Microbiota Transplantation
Gastrointestinal Microbiome
Therapeutics
Clostridium Infections

Differential impacts of land-based sources of pollution on the microbiota of southeast Florida coral reefs

Staley, C., Kaiser, T., Gidley, M. L., Enochs, I. C., Jones, P. R., Goodwin, K. D., Sinigalliano, C. D., Sadowsky, M. J. & Chun, C. L. May 1 2017 In : Applied and Environmental Microbiology. 83, 10, e03378-16

Research output: Research - peer-reviewArticle

coral reef
reef
land
source of pollution
coral reefs
antibiotic resistance
wastewater
gene
soil
effect
1 Citations

Environmental drivers of denitrification rates and denitrifying gene abundances in channels and riparian areas

Tomasek, A., Kozarek, J. L., Hondzo, M., Lurndahl, N., Sadowsky, M. J., Wang, P. & Staley, C. Aug 1 2017 In : Water Resources Research. 53, 8, p. 6523-6538 16 p.

Research output: Research - peer-reviewArticle

denitrification
gene
rate
nitrogen
parameter
1 Citations

Environmental Escherichia coli: ecology and public health implications—a review

Jang, J., Hur, H. G., Sadowsky, M. J., Byappanahalli, M. N., Yan, T. & Ishii, S. Sep 1 2017 In : Journal of Applied Microbiology. 123, 3, p. 570-581 12 p.

Research output: Research - peer-reviewReview article

Ecology
Public Health
Escherichia coli
Bacteria
Population Genetics

Factors influencing the Salmonella internalization into seedpods and whole plants of Arachis hypogaea (L.)

Rossbach, J. D., Fink, R. C., Sadowsky, M. J., Tong, C. & Diez-Gonzalez, F. Sep 1 2017 In : Food Microbiology. 66, p. 184-189 6 p.

Research output: Research - peer-reviewArticle

Arachis hypogaea
Salmonella
Soil
Arachis
soil

Genes and gut bacteria involved in luminal butyrate reduction caused by diet and loperamide

Hwang, N., Eom, T., Gupta, S. K., Jeong, S. Y., Jeong, D. Y., Kim, Y. S., Lee, J. H., Sadowsky, M. J. & Unno, T. Dec 1 2017 In : Genes. 8, 12, 350

Research output: Research - peer-reviewArticle

Loperamide
Butyrates
Diet
Bacteria
Genes
1 Citations
Clostridium Infections
Clostridium difficile
Urinary Tract Infections
Therapeutics
Gentamicins
Denitrification
Genes
Nitrates
Water
Hyphomicrobiaceae

Influence of heavy metals on rhizosphere microbial communities of Siam weed (Chromolaena odorata (L.)) using a 16S rRNA gene amplicon sequencing approach

Ruangdech, T., Wongphatcharachai, M., Staley, C., Sadowsky, M. J. & Sajjaphan, K. Jun 1 2017 In : Agriculture and Natural Resources. 51, 3, p. 137-141 5 p.

Research output: Research - peer-reviewArticle

Chromolaena odorata
microbial communities
cadmium
rhizosphere
heavy metals
9 Citations

Interaction of gut microbiota with bile acid metabolism and its influence on disease states

Staley, C., Weingarden, A. R., Khoruts, A. & Sadowsky, M. J. Jan 1 2017 In : Applied Microbiology and Biotechnology. 101, 1, p. 47-64 18 p.

Research output: Research - peer-reviewReview article

Bile Acids and Salts
Gastrointestinal Microbiome
Biotransformation
Enzymes
Clostridium Infections

Metabolic Interference of sod gene mutations on catalase activity in Escherichia coli exposed to Gramoxone® (paraquat) herbicide

Gravina, F., Dobrzanski, T., Olchanheski, L. R., Galvão, C. W., Reche, P. M., Pileggi, S. A., Azevedo, R. A., Sadowsky, M. J. & Pileggi, M. May 1 2017 In : Ecotoxicology and Environmental Safety. 139, p. 89-96 8 p.

Research output: Research - peer-reviewArticle

Paraquat
Herbicides
Catalase
Superoxide Dismutase
Escherichia coli
26 Citations

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: An open-label study

Kang, D. W., Adams, J. B., Gregory, A. C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., McDonough-Means, S., Pollard, E. L., Roux, S., Sadowsky, M. J., Lipson, K. S., Sullivan, M. B., Caporaso, J. G. & Krajmalnik-Brown, R. Jan 1 2017 In : Microbiome. 5, 1, 10

Research output: Research - peer-reviewArticle

Microbiota
Autistic Disorder
Ecosystem
Therapeutics
Autism Spectrum Disorder

Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands

Romão, D., Staley, C., Ferreira, F., Rodrigues, R., Sabino, R., Veríssimo, C., Wang, P., Sadowsky, M. & Brandão, J. Jun 15 2017 In : Marine Pollution Bulletin. 119, 1, p. 351-358 8 p.

Research output: Research - peer-reviewArticle

prokaryotic cells
beaches
sand
fungi
methodology
4 Citations

Nitrification gene ratio and free ammonia explain nitrite and nitrous oxide production in urea-amended soils

Breuillin-Sessoms, F., Venterea, R. T., Sadowsky, M. J., Coulter, J. A., Clough, T. J. & Wang, P. Aug 1 2017 In : Soil Biology and Biochemistry. 111, p. 143-153 11 p.

Research output: Research - peer-reviewArticle

nitrous oxide
urea
nitrite
nitrification
ammonia

Novel microbial assemblages dominate weathered sulfidebearing rock from copper-nickel deposits in the Duluth Complex, Minnesota, USA

Jones, D. S., Lapakko, K. A., Wenz, Z. J., Olson, M. C., Roepke, E. W., Sadowsky, M. J., Novak, P. J. & Bailey, J. V. Aug 1 2017 In : Applied and Environmental Microbiology. 83, 16, e00909-17

Research output: Research - peer-reviewArticle

nickel
copper
rock
rocks
Sulfides

Optimization of conditions for decolorization of azo-based textile dyes by multiple fungal species

Abd El-Rahim, W. M., Moawad, H., Abdel Azeiz, A. Z. & Sadowsky, M. J. Oct 20 2017 In : Journal of Biotechnology. 260, p. 11-17 7 p.

Research output: Research - peer-reviewArticle

Azo Compounds
Textiles
Coloring Agents
Fungi
Nitrogen
phylogenetics
surface water
animal
Escherichia coli
Water
2 Citations

Recent changes to the classification of symbiotic, nitrogen-fixing, legume-associating bacteria: a review

Shamseldin, A., Abdelkhalek, A. & Sadowsky, M. J. Feb 1 2017 In : Symbiosis. 71, 2, p. 91-109 19 p.

Research output: Research - peer-reviewReview article

legumes
taxonomy
bacteria
nitrogen
Fabaceae

Sleeve gastrectomy drives persistent shifts in the gut microbiome

Jahansouz, C., Staley, C., Bernlohr, D. A., Sadowsky, M. J., Khoruts, A. & Ikramuddin, S. Jun 1 2017 In : Surgery for Obesity and Related Diseases. 13, 6, p. 916-924 9 p.

Research output: Research - peer-reviewArticle

Gastrectomy
Gastrointestinal Microbiome
Weights and Measures
Obese Mice
Bariatric Surgery
1 Citations

Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula

Moll, K. M., Zhou, P., Ramaraj, T., Fajardo, D., Devitt, N. P., Sadowsky, M. J., Stupar, R. M., Tiffin, P., Miller, J. R., Young, N. D., Silverstein, K. A. T. & Mudge, J. Aug 4 2017 In : BMC Genomics. 18, 1, 578

Research output: Research - peer-reviewArticle

Medicago truncatula
Fabaceae
Technology
Genome
Plant Genome
4 Citations

Successful Resolution of Recurrent Clostridium difficile Infection using Freeze-Dried, Encapsulated Fecal Microbiota; Pragmatic Cohort Study

Staley, C., Hamilton, M. J., Vaughn, B. P., Graiziger, C. T., Newman, K. M., Kabage, A. J., Sadowsky, M. J. & Khoruts, A. Feb 14 2017 (Accepted/In press) In : American Journal of Gastroenterology.

Research output: Research - peer-reviewArticle

Clostridium Infections
Clostridium difficile
Microbiota
Cohort Studies
Fecal Microbiota Transplantation
4 Citations

Synthesis and Biological Evaluation of Bile Acid Analogues Inhibitory to Clostridium difficile Spore Germination

Stoltz, K. L., Erickson, R., Staley, C., Weingarden, A. R., Romens, E., Steer, C. J., Khoruts, A., Sadowsky, M. J. & Dosa, P. I. Apr 27 2017 In : Journal of Medicinal Chemistry. 60, 8, p. 3451-3471 21 p.

Research output: Research - peer-reviewArticle

Clostridium difficile
Germination
Spores
Bile Acids and Salts
Clostridium Infections
1 Citations

The diet and gut microbial communities of two closely related combtooth blennies, chasmodes saburrae and scartella cristata

Hundt, P. J., Hundt, M. J., Staley, C., Sadowsky, M. J. & Simons, A. M. Jul 1 2017 In : Copeia. 105, 2, p. 249-256 8 p.

Research output: Research - peer-reviewArticle

intestinal microorganisms
microbial communities
diet
Scartella
microbiome

Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism

Burghardt, L. T., Guhlin, J., Chun, C. L., Liu, J., Sadowsky, M. J., Stupar, R. M., Young, N. D. & Tiffin, P. Nov 1 2017 In : Molecular Ecology. 26, 21, p. 6122-6135 14 p.

Research output: Research - peer-reviewArticle

Rhizobium
Symbiosis
Fabaceae
Genome
Genes

Type IV effector proteins involved in the medicago-sinorhizobium symbiosis

Nelson, M. S., Chun, C. L. & Sadowsky, M. J. Jan 1 2017 In : Molecular Plant-Microbe Interactions. 30, 1, p. 28-34 7 p.

Research output: Research - peer-reviewArticle

Sinorhizobium
Medicago
symbiosis
proteins
Symbiosis

Type IV Effector Proteins Involved in the Medicago-Sinorhizobium Symbiosis

Nelson, M. S., Chun, C. L. & Sadowsky, M. J. 2017 In : Molecular Plant-Microbe Interactions. p. MPMI-10

Research output: Research - peer-reviewArticle

Virulence and biodegradation potential of dynamic microbial communities associated with decaying Cladophora in Great Lakes

Chun, C. L., Peller, J. R., Shively, D., Byappanahalli, M. N., Whitman, R. L., Staley, C., Zhang, Q., Ishii, S. & Sadowsky, M. J. Jan 1 2017 In : Science of the Total Environment. 574, p. 872-880 9 p.

Research output: Research - peer-reviewArticle

virulence
microbial community
biodegradation
lake
Biodegradation
2016
4 Citations
cover crop
soil cover
nutrient cycling
community structure
fertilizer
1 Citations

Bacterial biogeography influenced by shelf-basin exchange in the Arctic surface sediment at the Chukchi Borderland

Han, D., Nam, S. I., Ha, H. K., Kim, H., Sadowsky, M. J., Lee, Y. K. & Hur, H. G. Feb 1 2016 In : Environmental Microbiology. 18, 2, p. 668-678 11 p.

Research output: Research - peer-reviewArticle

biogeography
basin
sediment
Arctic region
basins
12 Citations

Beach sand and the potential for infectious disease transmission: Observations and recommendations

Solo-Gabriele, H. M. , Harwood, V. J. , Kay, D. , Fujioka, R. S. , Sadowsky, M. J. , Whitman, R. L. , Wither, A. , Caniça, M. , Carvalho da Fonseca, R. , Duarte, A. , Edge, T. A. , Gargaté, M. J. , Gunde-Cimerman, N. , Hagen, F. , McLellan, S. L. , Nogueira da Silva, A. , Novak Babič, M. , Prada, S. , Rodrigues, R. , Romão, D. & 9 others Sabino, R., Samson, R. A., Segal, E., Staley, C., Taylor, H. D., Veríssimo, C., Viegas, C., Barroso, H. & Brandão, J. C. Jan 1 2016 In : Journal of the Marine Biological Association of the United Kingdom. 96, 1, p. 101-120 20 p.

Research output: Research - peer-reviewArticle

disease transmission
infectious disease
beach
sand
recommendation
27 Citations

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J. Jan 1 2016 In : PLoS ONE. 11, 1, e0147210

Research output: Research - peer-reviewArticle

feces composition
Clostridium difficile
bile acids
germination
microbiome
10 Citations
Clostridium Infections
Clostridium difficile
Microbiota
Fecal Microbiota Transplantation
Tissue Donors
3 Citations

Correlations between pathogen concentration and fecal indicator marker genes in beach environments

Zhang, Q., Eichmiller, J. J., Staley, C., Sadowsky, M. J. & Ishii, S. Dec 15 2016 In : Science of the Total Environment. 573, p. 826-830 5 p.

Research output: Research - peer-reviewArticle

beach
pathogen
gene
marker
indicator
1 Citations

Draft genome sequences of four novel thermal- and alkaline-tolerant Egyptian Rhizobium strains nodulating berseem clover

Shamseldin, A., Nelson, M. S., Staley, C., Guhlin, J. & Sadowsky, M. J. 2016 In : Genome Announcements. 4, 5, e00988-16

Research output: Research - peer-reviewArticle

Medicago
Rhizobium
Hot Temperature
Genome
United States Department of Agriculture
70 Citations

Effect of fecal microbiota transplantation on recurrence in multiply recurrent clostridium difficile infection a randomized trial

Kelly, C. R., Khoruts, A., Staley, C., Sadowsky, M. J., Abd, M., Alani, M., Bakow, B., Curran, P., McKenney, J., Tisch, A., Reinert, S. E., MacHan, J. T. & Brandt, L. J. Nov 1 2016 In : Annals of Internal Medicine. 165, 9, p. 609-616 8 p.

Research output: Research - peer-reviewArticle

Clostridium Infections
Clostridium difficile
Recurrence
Fecal Microbiota Transplantation
Tissue Donors
5 Citations
Clostridium difficile
households
pollution
infection
contamination
6 Citations

Environment shapes the fecal microbiome of invasive carp species

Eichmiller, J. J., Hamilton, M. J., Staley, C., Sadowsky, M. J. & Sorensen, P. W. Jan 1 2016 In : Microbiome. 4, 44

Research output: Research - peer-reviewArticle

Introduced Species
Carps
Microbiota
Fishes
Fusobacteria
4 Citations

Faecal microbiota transplantation is promising but not a panacea

Sadowsky, M. J. & Khoruts, A. Feb 24 2016 In : Nature Microbiology. 1, 3, 16015

Research output: Research - peer-reviewComment/debate

Fecal Microbiota Transplantation