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2017
3 Citations

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Mar 1 2017, In : PLoS One. 12, 3, e0174132

Research output: Contribution to journalArticle

antibiotics
Anti-Bacterial Agents
Microbial Sensitivity Tests
Escherichia coli
urinary tract diseases
4 Citations

Bacteriuria/Pyuria of Clinically Undetermined Significance (BPCUS): Common, but Currently Nameless

Johnson, J. R. & Drekonja, D. M., May 1 2017, In : American Journal of Medicine. 130, 5, p. e201-e204

Research output: Contribution to journalEditorial

Pyuria
Bacteriuria
3 Citations

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R., Apr 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Contribution to journalArticle

beta-Lactamases
Escherichia coli
Military Personnel
Health Services
Phenotype
1 Citations
Transesophageal Echocardiography
Veterans
Bacteremia
Endocarditis
Echocardiography
1 Citations

Definition of complicated urinary tract infection

Johnson, J. R., Feb 15 2017, In : Clinical Infectious Diseases. 64, 4, 1 p.

Research output: Contribution to journalLetter

Urinary Tract Infections

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Pyelonephritis
Urinary Tract Infections
4 Citations

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M., Aug 1 2017, In : Antimicrobial Agents and Chemotherapy. 61, 8, e00732

Research output: Contribution to journalArticle

Fluoroquinolones
Cephalosporins
Escherichia coli
Virulence
Multiple Drug Resistance
2 Citations

Epidemiology and characteristics of Escherichia coli sequence type 131 (ST131) from long-term care facility residents colonized intestinally with fluoroquinolone-resistant Escherichia coli

Han, J. H., Garrigan, C., Johnston, B., Nachamkin, I., Clabots, C., Bilker, W. B., Santana, E., Tolomeo, P., Maslow, J., Myers, J., Carson, L., Lautenbach, E. & Johnson, J. R., Mar 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 3, p. 275-280 6 p.

Research output: Contribution to journalArticle

Fluoroquinolones
Long-Term Care
Epidemiology
Escherichia coli
Virulence Factors
6 Citations

Evaluation of Escherichia coli isolates from healthy chickens to determine their potential risk to poultry and human health

Stromberg, Z. R., Johnson, J. R., Fairbrother, J. M., Kilbourne, J., Van Goor, A., Curtiss, R. & Mellata, M., Jul 1 2017, In : PLoS One. 12, 7, e0180599

Research output: Contribution to journalArticle

Open Access
Poultry
Escherichia coli
human health
Chickens
poultry
1 Citations

Extraintestinal pathogenic and antimicrobialresistant Escherichia coli, including sequence type 131 (ST131), from retail chicken breasts in the United States in 2013

Johnson, J. R., Porter, S. B., Johnston, B., Thuras, P., Clock, S., Crupain, M. & Rangan, U., Jan 1 2017, In : Applied and Environmental Microbiology. 83, 6, e02956-16

Research output: Contribution to journalArticle

virulence
breasts
Chickens
Breast
Virulence
2 Citations

Fine-scale structure analysis shows epidemic patterns of clonal complex 95, a cosmopolitan Escherichia coli lineage responsible for extraintestinal infection

Gordon, D. M., Geyik, S., Clermont, O., O'Brien, C. L., Huang, S., Abayasekara, C., Rajesh, A., Kennedy, K., Collignon, P., Pavli, P., Rodriguez, C., Johnston, B. D., Johnson, J. R., Decousser, J. W. & Denamur, E., May 1 2017, In : mSphere. 2, 3, e00168-17

Research output: Contribution to journalArticle

Escherichia coli
Infection
Virulence
Pandemics
Microbial Drug Resistance
3 Citations

Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains

Stephens, C. M., Adams-Sapper, S., Sekhon, M., Johnson, J. R. & Riley, L. W., Mar 1 2017, In : mSphere. 2, 2, e00390-16

Research output: Contribution to journalArticle

Microbial Drug Resistance
Genomics
Statistical Factor Analysis
Plasmids
Escherichia coli
4 Citations

Genomic analysis of multidrug-resistant Escherichia coli from North Carolina community hospitals: Ongoing circulation of CTX-M-producing ST131-H30Rx and ST131-H30R1 Strains

Kanamori, H., Parobek, C. M., Juliano, J. J., Johnson, J. R., Johnston, B. D., Johnson, T. J., Weber, D. J., Rutala, W. A. & Anderson, D. J., Aug 1 2017, In : Antimicrobial Agents and Chemotherapy. 61, 8, e00912

Research output: Contribution to journalArticle

Community Hospital
Escherichia coli
Genome
Fluoroquinolones
Virulence
7 Citations

Gram-negative bacterial infections: Research priorities, accomplishments, and future directions of the Antibacterial Resistance Leadership Group

Doi, Y., Bonomo, R. A., Hooper, D. C., Kaye, K. S., Johnson, J. R., Clancy, C. J., Thaden, J. T., Stryjewski, M. E. & Van Duin, D., Jan 1 2017, In : Clinical Infectious Diseases. 64, p. S30-S35

Research output: Contribution to journalArticle

Gram-Negative Bacterial Infections
Bacterial Drug Resistance
Enterobacteriaceae
Gram-Negative Bacteria
Observational Studies
1 Citations

Inactivation of transcriptional regulators during withinhousehold evolution of Escherichia coli

Kisiela, D. I., Radey, M., Paul, S., Porter, S., Polukhina, K., Tchesnokova, V., Shevchenko, S., Chan, D., Aziz, M., Johnson, T. J., Price, L. B., Johnson, J. R. & Sokurenko, E. V., Jul 1 2017, In : Journal of Bacteriology. 199, 13, e00036-17

Research output: Contribution to journalArticle

Escherichia coli
Mutation
Cystitis
Pyelonephritis
Urine
surface water
Escherichia coli
phylogenetics
electrokinesis
gel
4 Citations

Rapid and specific detection of the Escherichia coli sequence type 648 complex within phylogroup F

Johnson, J. R., Johnston, B. D. & Gordon, D. M., Apr 1 2017, In : Journal of Clinical Microbiology. 55, 4, p. 1116-1121 6 p.

Research output: Contribution to journalArticle

Multiplex Polymerase Chain Reaction
Alleles
Escherichia coli
Confidence Intervals
Multilocus Sequence Typing
5 Citations
Escherichia coli Infections
Fluoroquinolones
Pandemics
beta-Lactamases
Virulence

To the editor

Johnson, J. R., Feb 9 2017, In : New England Journal of Medicine. 376, 6, 1 p.

Research output: Contribution to journalLetter

1 Citations
Pyuria
Bacteriuria
Therapeutics

Virulence genes and subclone status as markers of experimental virulence in a murine sepsis model among Escherichia coli sequence type 131 clinical isolates from Spain

Merino, I., Porter, S. B., Johnston, B. D., Clabots, C., Shaw, E., Horcajada, J. P., Cantón, R., Ruiz-Garbajosa, P., Johnson, J. R. & ITUBRAS-GEIH group, Nov 1 2017, In : PloS one. 12, 11, e0188838

Research output: Contribution to journalArticle

Spain
Escherichia coli
Virulence
Sepsis
virulence
2016
2 Citations
Veterans
Fluoroquinolones
Genotype
Escherichia coli
Phenotype
4 Citations

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002

Research output: Contribution to journalArticle

Single Nucleotide Polymorphism
Urine
Escherichia coli
Bacterial Load
Multilocus Sequence Typing
34 Citations

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2016, In : PloS one. 11, 1, e0147210

Research output: Contribution to journalArticle

feces composition
Clostridium difficile
Clostridium
bile acids
Germination
4 Citations
Cystitis
Urinary Tract Infections
Caregivers
Siblings
Plasmids
8 Citations
Clostridium Infections
Clostridium difficile
households
pollution
infection
20 Citations

Escherichia coli: An old friend with new tidings

Vila, J., Sáez-López, E., Johnson, J. R., Römling, U., Dobrindt, U., Cantón, R., Giske, C. G., Naas, T., Carattoli, A., Martínez-Medina, M., Bosch, J., Retamar, P., Rodríguez-Banõ, J., Baquero, F. & Soto, S. M., Jul 1 2016, In : FEMS Microbiology Reviews. 40, 4, p. 437-463 27 p.

Research output: Contribution to journalReview article

Virulence Factors
Virulence
Escherichia coli
Escherichia coli Infections
Modern 1601-history
2 Citations

Escherichia coli sequence type 131 H30 is the main driver of emerging extended-spectrum-β-lactamase-producing E. coli at a tertiary care center

Johnson, J. R., Johnston, B., Thuras, P., Launer, B., Sokurenko, E. V. & Miller, L. G., Nov 1 2016, In : mSphere. 1, 6, e00314-16

Research output: Contribution to journalArticle

beta-Lactamases
Tertiary Care Centers
Escherichia coli
Fluoroquinolones
galantide
2 Citations

Evaluation of CTX-M steady-state mRNA, mRNA half-life and protein production in various STs of Escherichia coli

Geyer, C. N., Fowler, R. C., Johnson, J. R., Johnston, B., Weissman, S. J., Hawkey, P. & Hanson, N. D., Mar 1 2016, In : Journal of Antimicrobial Chemotherapy. 71, 3, p. 607-616 10 p., dkv388

Research output: Contribution to journalArticle

Half-Life
Escherichia coli
Messenger RNA
Proteins
Plasmids
54 Citations

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

Modernizing Medical Microbiology Informatics Group (MMMIG), Mar 22 2016, In : mBio. 7, 2, e02162-15

Research output: Contribution to journalArticle

Clone Cells
Escherichia coli
Interspersed Repetitive Sequences
Plasmids
Fluoroquinolones
5 Citations

Household clustering of escherichia coli sequence type 131 clinical and fecal isolates according to whole genome sequence analysis

Johnson, J. R., Davis, G., Clabots, C., Johnston, B. D., Porter, S., DebRoy, C., Pomputius, W., Ender, P. T., Cooperstock, M., Slater, B. S., Banerjee, R., Miller, S., Kisiela, D., Sokurenko, E. V., Aziz, M. & Price, L. B., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 3, ofw129

Research output: Contribution to journalArticle

Sequence Analysis
Cluster Analysis
Genome
Escherichia coli
Phylogeny
3 Citations

Important Complexities of the Antivirulence Target Paradigm: A Novel Ostensibly Resistance-Avoiding Approach for Treating Infections

Russo, T. A., Spellberg, B. & Johnson, J. R., Mar 15 2016, In : Journal of Infectious Diseases. 213, 6, p. 901-903 3 p.

Research output: Contribution to journalArticle

Microbiota
Infection
Pharmaceutical Preparations
Bacteria
Therapeutics
2 Citations

Isolation and characterization of Escherichia coli sequence type 131 and other antimicrobial-resistant Gram-negative bacilli from clinical stool samples from veterans

Mohamed, M., Clabots, C., Porter, S. B., Thuras, P. & Johnson, J. R., Aug 1 2016, In : Antimicrobial Agents and Chemotherapy. 60, 8, p. 4638-4645 8 p.

Research output: Contribution to journalArticle

Veterans
Bacillus
Escherichia coli
Fluoroquinolones
Cephalosporins
5 Citations

Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia

Vangchhia, B., Abraham, S., Bell, J. M., Collignon, P., Gibson, J. S., Ingram, P. R., Johnson, J. R., Kennedy, K., Trott, D. J., Turnidge, J. D. & Gordon, D. M., Nov 1 2016, In : Microbiology (United Kingdom). 162, 11, p. 1904-1912 9 p., 000367

Research output: Contribution to journalArticle

Meat
Virulence
Poultry
Escherichia coli
Pets
12 Citations

Prevalence and characteristics of Escherichia coli sequence type 131 and its H30 and H30Rx subclones: A multicenter study from Korea

Kim, S. Y., Park, Y. J., Johnson, J. R., Yu, J. K., Kim, Y. K. & Kim, Y. S., Feb 1 2016, In : Diagnostic Microbiology and Infectious Disease. 84, 2, p. 97-101 5 p.

Research output: Contribution to journalArticle

Korea
Multicenter Studies
Plasmids
Escherichia coli
Replicon
5 Citations

Prolonged colonisation with escherichia coli O25: ST131 versus other extended-spectrum beta-lactamase-producing E. coli in a long-term care facility with high endemic level of rectal colonisation, the Netherlands, 2013 to 2014

Overdevest, I., Haverkate, M., Veenemans, J., Hendriks, Y., Verhulst, C., Mulders, A., Couprie, W., Bootsma, M., Johnson, J. & Kluytmans, J., Oct 20 2016, In : Eurosurveillance. 21, 42

Research output: Contribution to journalArticle

Long-Term Care
beta-Lactamases
Netherlands
Escherichia coli
Reproduction
14 Citations

Separate F-type plasmids have shaped the evolution of the H30 subclone of Escherichia coli sequence type 131

Johnson, T. J., Danzeisen, J. L., Youmans, B., Case, K., Llop, K., Munoz-Aguayo, J., Flores-Figueroa, C., Aziz, M., Stoesser, N., Sokurenko, E., Price, L. B. & Johnson, J. R., Jul 1 2016, In : mSphere. 1, 4, e00121-16

Research output: Contribution to journalArticle

F Factor
Plasmids
Escherichia coli
Fluoroquinolones
Overlapping Genes
2 Citations
Long-Term Care
Veterans
Urinary Tract
Escherichia coli
Tocopherols
13 Citations

The Pandemic H30 Subclone of Escherichia coli Sequence Type 131 Is Associated with Persistent Infections and Adverse Outcomes Independent from Its Multidrug Resistance and Associations with Compromised Hosts

Johnson, J. R., Thuras, P., Johnston, B. D., Weissman, S. J., Limaye, A. P., Riddell, K., Scholes, D., Tchesnokova, V. & Sokurenko, E., Jun 15 2016, In : Clinical Infectious Diseases. 62, 12, p. 1529-1536 8 p.

Research output: Contribution to journalArticle

Multiple Drug Resistance
Pandemics
Odds Ratio
Confidence Intervals
Escherichia coli
24 Citations

Ursodeoxycholic acid inhibits clostridium difficile spore germination and vegetative growth, and prevents the recurrence of ileal pouchitis associated with the infection

Weingarden, A. R., Chen, C., Zhang, N., Graiziger, C. T., Dosa, P. I., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Sadowsky, M. J. & Khoruts, A., Jan 1 2016, In : Journal of Clinical Gastroenterology. 50, 8, p. 624-630 7 p.

Research output: Contribution to journalArticle

Pouchitis
Ursodeoxycholic Acid
Clostridium difficile
Germination
Spores
2015
18 Citations

Clinical and microbiological determinants of infection after transrectal prostate biopsy

Liss, M. A., Johnson, J. R., Porter, S. B., Johnston, B., Clabots, C., Gillis, K., Nseyo, U., Holden, M., Sakamoto, K. & Fierer, J., Jan 1 2015, In : Clinical Infectious Diseases. 60, 7, p. 979-987 9 p.

Research output: Contribution to journalArticle

Fluoroquinolones
Prostate
Biopsy
Escherichia coli
Infection
19 Citations
Methicillin
Long-Term Care
Enterobacteriaceae
beta-Lactamases
Staphylococcus aureus
2 Citations

Colonization with Escherichia coli strains among female sex partners of men with febrile urinary tract infection

Ulleryd, P., Sandberg, T., Scheutz, F., Clabots, C., Johnston, B. D., Thuras, P. & Johnson, J. R., Jan 1 2015, In : Journal of Clinical Microbiology. 53, 6, p. 1947-1950 4 p.

Research output: Contribution to journalArticle

Urinary Tract Infections
Fever
Escherichia coli
Virulence
Genes
11 Citations

Diagnostic Errors that Lead to Inappropriate Antimicrobial Use

Filice, G. A., Drekonja, D. M., Thurn, J. R., Hamann, G. M., Masoud, B. T. & Johnson, J. R., Jan 1 2015, In : Infection Control and Hospital Epidemiology. 36, 8, p. 949-956 8 p.

Research output: Contribution to journalArticle

Diagnostic Errors
Inpatients
Signs and Symptoms
Veterans Hospitals
Cohort Studies
Fluoroquinolones
Escherichia coli
12 Citations

Extensive household outbreak of urinary tract infection and intestinal colonization due to extended-spectrum β-lactamase-producing Escherichia coli sequence type 131

Madigan, T., Johnson, J. R., Clabots, C., Johnston, B. D., Porter, S. B., Slater, B. S. & Banerjee, R., Jul 1 2015, In : Clinical Infectious Diseases. 61, 1, p. e5-e12

Research output: Contribution to journalArticle

beta-Lactamases
Urinary Tract Infections
Disease Outbreaks
Escherichia coli
Virulence
21 Citations

Extensive within-host diversity in fecally carried extended-spectrum-beta-lactamase-producing Escherichia coli Isolates: Implications for transmission analyses

Stoesser, N., Sheppard, A. E., Moore, C. E., Golubchik, T., Parry, C. M., Nget, P., Saroeun, M., Day, N. P. J., Giess, A., Johnson, J. R., Peto, T. E. A., Crook, D. W. & Walker, A. S., Jul 1 2015, In : Journal of Clinical Microbiology. 53, 7, p. 2122-2131 10 p.

Research output: Contribution to journalArticle

beta-Lactamases
Escherichia coli
Genome
Clone Cells
Cambodia
2 Citations

Extraintestinal pathogenic and antimicrobial-resistant Escherichia coli contamination of 56 public restrooms in the greater Minneapolis-St. Paul metropolitan area

Mohamed, M., Owens, K., Gajewski, A., Clabots, C., Johnston, B., Thuras, P., Kuskowski, M. A. & Johnson, J. R., Jan 1 2015, In : Applied and Environmental Microbiology. 81, 13, p. 4498-4506 9 p.

Research output: Contribution to journalArticle

virulence
metropolitan area
anti-infective agents
Escherichia coli
electrokinesis
25 Citations

First detection of extended-spectrum cephalosporin- and fluoroquinolone-resistant Escherichia coli in Australian food-producing animals

Abraham, S., Jordan, D., Wong, H. S., Johnson, J. R., Toleman, M. A., Wakeham, D. L., Gordon, D. M., Turnidge, J. D., Mollinger, J. L., Gibson, J. S. & Trott, D. J., Dec 1 2015, In : Journal of Global Antimicrobial Resistance. 3, 4, p. 273-277 5 p.

Research output: Contribution to journalArticle

Fluoroquinolones
Cephalosporins
Escherichia coli
Food
Swine
11 Citations

Genetic structure and antimicrobial resistance of Escherichia coli and cryptic clades in birds with diverse human associations

Blyton, M. D. J., Pi, H., Vangchhia, B., Abraham, S., Trott, D. J., Johnson, J. R. & Gordon, D. M., Jan 1 2015, In : Applied and Environmental Microbiology. 81, 15, p. 5123-5133 11 p.

Research output: Contribution to journalArticle

Genetic Structures
Escherichia
antibiotic resistance
genetic structure
Birds