Find Research Outputs

Search concepts
Selected Filters
2018
4 Citations

Application of SourceTracker for Accurate Identification of Fecal Pollution in Recreational Freshwater: A Double-Blinded Study

Staley, C., Kaiser, T., Lobos, A., Ahmed, W., Harwood, V. J., Brown, C. M. & Sadowsky, M. J., Apr 3 2018, In : Environmental Science and Technology. 52, 7, p. 4207-4217 11 p.

Research output: Contribution to journalArticle

Pollution
pollution
Contamination
Sewage
horse

Bacillus megaterium strains derived from water and soil exhibit differential responses to the herbicide mesotrione

Dobrzanski, T., Gravina, F., Steckling, B., Olchanheski, L. R., Sprenger, R. F., Espírito Santo, B. C., Galvão, C. W., Reche, P. M., Prestes, R. A., Pileggi, S. A. V., Campos, F. R., Azevedo, R. A., Sadowsky, M. J., Beltrame, F. L. & Pileggi, M., Apr 1 2018, In : PloS one. 13, 4, e0196166.

Research output: Contribution to journalArticle

mesotrione
Bacillus megaterium
Herbicides
Soil
herbicides

CLOUD: A non-parametric detection test for microbiome outliers

Montassier, E., Al-Ghalith, G. A., Hillmann, B., Viskocil, K. C., Kabage, A. J., McKinlay, C. E., Sadowsky, M. J., Khoruts, A. & Knights, D., Aug 6 2018, In : Microbiome. 6, 1, 137.

Research output: Contribution to journalArticle

Microbiota
Dysbiosis
Healthy Volunteers
Clostridium difficile
Immune System Diseases

Comparisons of bacterial and archaeal communities in the rumen and a dual-flow continuous culture fermentation system using amplicon sequencing

Salfer, I. J., Staley, C. M., Johnson, H. E., Sadowsky, M. J. & Stern, M. D., Apr 3 2018, In : Journal of animal science. 96, 3, p. 1059-1072 14 p.

Research output: Contribution to journalArticle

fermenters
Rumen
Fermentation
rumen
fermentation

Complete genome sequence of Sinorhizobium meliloti bacteriophage HMSP1-Susan

Fleagle, B., Imamovic, A., Toledo, S., Couves, M., Jensen, A., Vang, M., Steevens, A., Young, N. D., Sadowsky, M. J. & Martinez-Vaz, B. M., May 1 2018, In : Genome Announcements. 6, 18, e01450-17.

Research output: Contribution to journalArticle

Sinorhizobium meliloti
Bacteriophages
Genome
Base Composition
Viruses

Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF

Dale, J., Beckman, K. B., Willett, J. L. E., Nilson, J. L., Palani, N. P., Baller, J. A., Hauge, A., Gohl, D. M., Erickson, R., Manias, D. A., Sadowsky, M. J. & Dunny, G. M., Sep 1 2018, In : mSystems. 3, 5, e0006218.

Research output: Contribution to journalArticle

Functional analysis
Enterococcus faecalis
Functional Analysis
Mutant
mutation
antibiotic resistance
drain
bacterium
gene
water
3 Citations

Current understanding of microbiota- and dietary-therapies for treating inflammatory bowel disease

Eom, T., Kim, Y. S., Choi, C. H., Sadowsky, M. J. & Unno, T., Mar 1 2018, In : Journal of Microbiology. 56, 3, p. 189-198 10 p.

Research output: Contribution to journalReview article

Microbiota
Inflammatory Bowel Diseases
Dysbiosis
Therapeutics
Bacteroidetes
1 Citations

Decay of sewage-associated bacterial communities in fresh and marine environmental waters and sediment

Ahmed, W., Staley, C. M., Kaiser, T., Sadowsky, M. J., Kozak, S., Beale, D. & Simpson, S., Aug 1 2018, In : Applied Microbiology and Biotechnology. 102, 16, p. 7159-7170 12 p.

Research output: Contribution to journalArticle

Sewage
Water
Water Quality
Queensland
Fresh Water
2 Citations

Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice

Le Bastard, Q., Ward, T., Sidiropoulos, D., Hillmann, B. M., Chun, C. L., Sadowsky, M. J., Knights, D. & Montassier, E., Dec 1 2018, In : Scientific reports. 8, 1, 6219.

Research output: Contribution to journalArticle

Dysbiosis
Anti-Bacterial Agents
Drug Therapy
Ampicillin
Clostridium Infections

Fecal pollution: new trends and challenges in microbial source tracking using next-generation sequencing

Unno, T., Staley, C. M., Brown, C. M., Han, D., Sadowsky, M. J. & Hur, H. G., Jan 1 2018, (Accepted/In press) In : Environmental microbiology.

Research output: Contribution to journalArticle

pollution
methodology
Libraries
Water
method

Genome-wide association analyses in the model rhizobium Ensifer meliloti

Epstein, B., Aboushanab, R., Shamseldin, A., Taylor, M. R., Guhlin, J., Burghardt, L., Nelson, M., Sadowsky, M. J. & Tiffin, P. L., Sep 1 2018, In : mSphere. 3, 5, e00386-18.

Research output: Contribution to journalArticle

Rivers
Land use
river
Sampling
Turbidity
Metagenomics
Ecosystem
Microbiota
DNA Sequence Analysis
Technology
1 Citations

Precipitation influences pathogenic bacteria and antibiotic resistance gene abundance in storm drain outfalls in coastal sub-tropical waters

Ahmed, W., Zhang, Q., Lobos, A., Senkbeil, J., Sadowsky, M. J., Harwood, V. J., Saeidi, N., Marinoni, O. & Ishii, S., Jul 1 2018, In : Environment International. 116, p. 308-318 11 p.

Research output: Contribution to journalArticle

antibiotic resistance
drain
bacterium
gene
sewage

Predicting recurrence of Clostridium difficile infection following encapsulated fecal microbiota transplantation

Staley, C. M., Kaiser, T., Vaughn, B. P., Graiziger, C. T., Hamilton, M. J., Rehman, T. U., Song, K., Khoruts, A. & Sadowsky, M. J., Sep 18 2018, In : Microbiome. 6, 1, 166.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Recurrence
Tissue Donors
Microbiota
4 Citations

Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage

Ahmed, W., Hamilton, K. A., Lobos, A., Hughes, B., Staley, C., Sadowsky, M. J. & Harwood, V. J., Aug 1 2018, In : Environment International. 117, p. 243-249 7 p.

Research output: Contribution to journalArticle

risk assessment
sewage
water
health risk
pathogen

Role of rhizobacteria in phytoremediation of metal-impacted sites

Aboushanab, R., El-Sheekh, M. M. & Sadowsky, M. J., May 25 2018, Emerging and Eco-Friendly Approaches for Waste Management. Springer Singapore, p. 299-328 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

phytoremediation
rhizobacterium
metal
Metals
Bacteria

Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach

Beale, D. J., Crosswell, J., Karpe, A. V., Metcalfe, S. S., Morrison, P. D., Staley, C., Ahmed, W., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L., Aug 1 2018, In : Science of the Total Environment. 631-632, p. 1328-1341 14 p.

Research output: Contribution to journalArticle

marine sediment
Sediments
wet season
Nutrients
community composition
1 Citations
Bacteria
Melilotus
Nitrogen Fixation
Rhizobium
Molecular Evolution
North America
macrophyte
microbial community
Water
Lakes
7 Citations

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

Smillie, C. S., Sauk, J., Gevers, D., Friedman, J., Sung, J., Youngster, I., Hohmann, E. L., Staley, C. M., Khoruts, A., Sadowsky, M. J., Allegretti, J. R., Smith, M. B., Xavier, R. J. & Alm, E. J., Feb 14 2018, In : Cell Host and Microbe. 23, 2, p. 229-240.e5

Research output: Contribution to journalArticle

Clostridium difficile
Microbiota
Tissue Donors
Bacteria
Clostridium Infections
1 Citations
genes
Nitrates
fluvial deposit
nitrates
Sediments
1 Citations
Urea
Soil
Nitrification
Nitrosomonadaceae
Xanthomonadaceae

Widespread occurrence of Sinorhizobium meliloti strains with a type IV secretion system

Cao, Y., Miller, S. S., Dornbusch, M. R., Castle, S. C., Lenz, P., Ferguson, J., Sadowsky, M. J., Nelson, M., Klatt, C. & Samac, D. A., Jun 1 2018, In : Symbiosis. 75, 2, p. 81-91 11 p.

Research output: Contribution to journalArticle

Sinorhizobium meliloti
Ensifer meliloti
Medicago sativa
Rhizobium
alfalfa
2017
7 Citations

A community multi-omics approach towards the assessment of surface water quality in an urban river system

Beale, D. J., Karpe, A. V., Ahmed, W., Cook, S., Morrison, P. D., Staley, C., Sadowsky, M. J. & Palombo, E. A., Mar 14 2017, In : International journal of environmental research and public health. 14, 3, 303.

Research output: Contribution to journalArticle

Water Quality
Rivers
Ecosystem
Mass Spectrometry
Actinomycetales
9 Citations
Estuaries
Lakes
Bacteria
Animals
Throughput
7 Citations

Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia

Ahmed, W., Staley, C. M., Sidhu, J., Sadowsky, M. J. & Toze, S., Feb 1 2017, In : Applied Microbiology and Biotechnology. 101, 3, p. 1253-1266 14 p.

Research output: Contribution to journalArticle

Waste Water
Bacteria
Arcobacter
Genes
Pseudomonas
9 Citations

Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks

Ahmed, W., Staley, C., Hamilton, K. A., Beale, D. J., Sadowsky, M. J., Toze, S. & Haas, C. N., Jan 15 2017, In : Science of the Total Environment. 576, p. 326-334 9 p.

Research output: Contribution to journalArticle

Water tanks
rainwater
Roofs
roof
Bacteria
2 Citations

A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef

Beale, D. J., Crosswell, J., Karpe, A. V., Ahmed, W., Williams, M., Morrison, P. D., Metcalfe, S., Staley, C., Sadowsky, M. J., Palombo, E. A. & Steven, A. D. L., Dec 31 2017, In : Science of the Total Environment. 609, p. 842-853 12 p.

Research output: Contribution to journalArticle

Reefs
sterol
coastal sediment
Sterols
Polycyclic aromatic hydrocarbons
5 Citations

Analysis of gut microbiota–An ever changing landscape

Sadowsky, M. J., Staley, C., Heiner, C., Hall, R., Kelly, C. R., Brandt, L. & Khoruts, A., May 4 2017, In : Gut Microbes. 8, 3, p. 268-275 8 p.

Research output: Contribution to journalArticle

Technology
Clostridium Infections
Clostridium difficile
Microbiota
Metagenomics
8 Citations

Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease

Khanna, S., Vazquez-Baeza, Y., González, A., Weiss, S., Schmidt, B., Muñiz-Pedrogo, D. A., Rainey, J. F., Kammer, P., Nelson, H., Sadowsky, M., Khoruts, A., Farrugia, S. L., Knight, R., Pardi, D. S. & Kashyap, P. C., Jan 1 2017, In : Microbiome. 5, 1, 55.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Ecology
Inflammatory Bowel Diseases
Infection
6 Citations

Community dynamics drive punctuated engraftment of the fecal microbiome following transplantation using freeze-dried, encapsulated fecal microbiota

Staley, C. M., Vaughn, B. P., Graiziger, C. T., Singroy, S., Hamilton, M. J., Yao, D., Chen, C., Khoruts, A. & Sadowsky, M. J., May 4 2017, In : Gut Microbes. 8, 3, p. 276-288 13 p.

Research output: Contribution to journalArticle

Microbiota
Clostridium Infections
Clostridium difficile
Transplantation
Tissue Donors

Competition between introduced Bradyrhizobium japonicum strains and indigenous bradyrhizobia in Minnesota organic farming systems

Aboushanab, R., Wongphatcharachai, M., Sheaffer, C. C., Orf, J. C. & Sadowsky, M. J., Nov 1 2017, In : Symbiosis. 73, 3, p. 155-163 9 p.

Research output: Contribution to journalArticle

Organic Agriculture
Bradyrhizobiaceae
Bradyrhizobium
Bradyrhizobium japonicum
organic production
Triclosan
Waste Water
Pseudomonas aeruginosa
Genome
Base Composition
2 Citations
Intestinal Diseases
Clostridium Infections
Clostridium difficile
Complementary Therapies
Hemostasis
8 Citations

Differential impacts of land-based sources of pollution on the microbiota of southeast Florida coral reefs

Staley, C. M., Kaiser, T., Gidley, M. L., Enochs, I. C., Jones, P. R., Goodwin, K. D., Sinigalliano, C. D., Sadowsky, M. J. & Chun, C., May 1 2017, In : Applied and Environmental Microbiology. 83, 10, e03378-16.

Research output: Contribution to journalArticle

Coral Reefs
Microbiota
coral reefs
coral reef
reef
2 Citations

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

Staley, C. M., Ferrieri, A. P., Tfaily, M. M., Cui, Y., Chu, R. K., Wang, P., Shaw, J. B., Ansong, C. K., Brewer, H., Norbeck, A. D., Markillie, M., do Amaral, F., Tuleski, T., Pellizzaro, T., Agtuca, B., Ferrieri, R., Tringe, S. G., Paša-Tolić, L., Stacey, G. & Sadowsky, M. J., Jun 24 2017, In : Microbiome. 5, 1, 1 p.

Research output: Contribution to journalArticle

Rhizosphere
Carbon
Circadian Clocks
Photoperiod
Brachypodium
4 Citations
antibiotic resistance
Wastewater
Genes
Anti-Bacterial Agents
Soils
5 Citations

Environmental drivers of denitrification rates and denitrifying gene abundances in channels and riparian areas

Tomasek, A., Kozarek, J., Hondzo, M., Lurndahl, N., Sadowsky, M. J., Wang, P. & Staley, C. M., Aug 1 2017, In : Water Resources Research. 53, 8, p. 6523-6538 16 p.

Research output: Contribution to journalArticle

denitrification
gene
intensive agriculture
climatic region
rate
14 Citations

Environmental Escherichia coli: ecology and public health implications—a review

Jang, J., Hur, H. G., Sadowsky, M. J., Byappanahalli, M. N., Yan, T. & Ishii, S., Sep 1 2017, In : Journal of Applied Microbiology. 123, 3, p. 570-581 12 p.

Research output: Contribution to journalReview article

Ecology
Public Health
Escherichia coli
Population Genetics
Bacteria

Factors influencing the Salmonella internalization into seedpods and whole plants of Arachis hypogaea (L.)

Rossbach, J. D., Fink, R. C., Sadowsky, M. J., Tong, C. B. & Diez-Gonzalez, F., Sep 1 2017, In : Food Microbiology. 66, p. 184-189 6 p.

Research output: Contribution to journalArticle

Arachis hypogaea
Salmonella
Soil
peanuts
Salmonella Typhimurium

Genes and gut bacteria involved in luminal butyrate reduction caused by diet and loperamide

Hwang, N., Eom, T., Gupta, S. K., Jeong, S. Y., Jeong, D. Y., Kim, Y. S., Lee, J. H., Sadowsky, M. J. & Unno, T., Dec 1 2017, In : Genes. 8, 12, 350.

Research output: Contribution to journalArticle

Loperamide
Butyrates
Diet
Bacteria
Genes
2 Citations
Clostridium Infections
Clostridium difficile
Urinary Tract Infections
Gentamicins
Aminoglycosides
2 Citations
Denitrification
Hyphomicrobiaceae
Burkholderiaceae
Cytophagaceae
Nitrates
1 Citations

Influence of heavy metals on rhizosphere microbial communities of Siam weed (Chromolaena odorata (L.)) using a 16S rRNA gene amplicon sequencing approach

Ruangdech, T., Wongphatcharachai, M., Staley, C. M., Sadowsky, M. J. & Sajjaphan, K., Jun 1 2017, In : Agriculture and Natural Resources. 51, 3, p. 137-141 5 p.

Research output: Contribution to journalArticle

Chromolaena
Chromolaena odorata
Rhizosphere
Thailand
Heavy Metals
25 Citations

Interaction of gut microbiota with bile acid metabolism and its influence on disease states

Staley, C. M., Weingarden, A. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2017, In : Applied Microbiology and Biotechnology. 101, 1, p. 47-64 18 p.

Research output: Contribution to journalReview article

Bile Acids and Salts
Biotransformation
Clostridium Infections
Gastrointestinal Microbiome
Clostridium difficile
3 Citations

Metabolic Interference of sod gene mutations on catalase activity in Escherichia coli exposed to Gramoxone® (paraquat) herbicide

Gravina, F., Dobrzanski, T., Olchanheski, L. R., Galvão, C. W., Reche, P. M., Pileggi, S. A., Azevedo, R. A., Sadowsky, M. J. & Pileggi, M., May 1 2017, In : Ecotoxicology and Environmental Safety. 139, p. 89-96 8 p.

Research output: Contribution to journalArticle

Paraquat
Herbicides
Catalase
Escherichia coli
Superoxide Dismutase
90 Citations

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: An open-label study

Kang, D. W., Adams, J. B., Gregory, A. C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., McDonough-Means, S., Pollard, E. L., Roux, S., Sadowsky, M. J., Lipson, K. S., Sullivan, M. B., Caporaso, J. G. & Krajmalnik-Brown, R., Jan 1 2017, In : Microbiome. 5, 1, 10.

Research output: Contribution to journalArticle

Microbiota
Autistic Disorder
Ecosystem
Therapeutics
Autism Spectrum Disorder

Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands

Romão, D., Staley, C., Ferreira, F., Rodrigues, R., Sabino, R., Veríssimo, C., Wang, P., Sadowsky, M. & Brandão, J., Jun 15 2017, In : Marine Pollution Bulletin. 119, 1, p. 351-358 8 p.

Research output: Contribution to journalArticle

prokaryote
Beaches
prokaryotic cells
Fungi
beaches