Find Research Outputs

Search concepts
Selected Filters
2018

Acute pyelonephritis in adults

Johnson, J. R. & Russo, T. A. Jan 4 2018 In : New England Journal of Medicine. 378, 1, p. 48-59 12 p.

Research output: Research - peer-reviewArticle

Severity of Illness Index
Drug Administration Schedule
Drug Administration Routes
Flank Pain
Dysuria

Delirium in hospitalized older adults

Johnson, J. R. Jan 4 2018 In : New England Journal of Medicine. 378, 1, 1 p.

Research output: Research - peer-reviewLetter

Delirium
Hospitalization
2017
2 Citations

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V. Mar 1 2017 In : PLoS ONE. 12, 3, e0174132

Research output: Research - peer-reviewArticle

antibiotics
Anti-Bacterial Agents
Escherichia coli
Microbial Sensitivity Tests
urinary tract diseases
2 Citations

Bacteriuria/Pyuria of Clinically Undetermined Significance (BPCUS): Common, but Currently Nameless

Johnson, J. R. & Drekonja, D. M. May 1 2017 In : American Journal of Medicine. 130, 5, p. e201-e204

Research output: Research - peer-reviewEditorial

Pyuria
Bacteriuria
1 Citations

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R. Apr 1 2017 In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Research - peer-reviewArticle

Escherichia coli
beta-Lactamases
Military Personnel
Health Services
Phenotype

Comparative sensitivity of transthoracic and transesophageal echocardiography in diagnosis of infective endocarditis among veterans with Staphylococcus aureus bacteremia

Sekar, P., Johnson, J. R., Thurn, J. R., Drekonja, D. M., Morrison, V. A., Chandrashekhar, Y., Adabag, S., Kuskowski, M. A. & Filice, G. A. Mar 1 2017 In : Open Forum Infectious Diseases. 4, 2, ofx035

Research output: Research - peer-reviewArticle

Transesophageal Echocardiography
Veterans
Bacteremia
Endocarditis
Echocardiography
1 Citations

Definition of complicated urinary tract infection

Johnson, J. R. Feb 15 2017 In : Clinical Infectious Diseases. 64, 4, p. 529 1 p.

Research output: Research - peer-reviewLetter

Urinary Tract Infections

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R. Jan 1 2017 In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Research - peer-reviewLetter

Pyelonephritis
Urinary Tract Infections
3 Citations

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M. Aug 1 2017 In : Antimicrobial Agents and Chemotherapy. 61, 8, e00732

Research output: Research - peer-reviewArticle

Fluoroquinolones
Escherichia coli
Cephalosporins
Virulence
Infection
2 Citations

Evaluation of Escherichia coli isolates from healthy chickens to determine their potential risk to poultry and human health

Stromberg, Z. R., Johnson, J. R., Fairbrother, J. M., Kilbourne, J., Van Goor, A., Curtiss, R. & Mellata, M. Jul 1 2017 In : PLoS ONE. 12, 7, e0180599

Research output: Research - peer-reviewArticle

Poultry
Chickens
Escherichia coli
Health
Extraintestinal Pathogenic Escherichia coli
Chickens
Breast
Extraintestinal Pathogenic Escherichia coli
breasts
chickens
phylogenetics
surface water
animal
Escherichia coli
Water
1 Citations

Rapid and specific detection of the Escherichia coli sequence type 648 complex within phylogroup F

Johnson, J. R., Johnston, B. D. & Gordon, D. M. Apr 1 2017 In : Journal of Clinical Microbiology. 55, 4, p. 1116-1121 6 p.

Research output: Research - peer-reviewArticle

Alleles
Escherichia coli
Multiplex Polymerase Chain Reaction
Confidence Intervals
DNA
1 Citations
Escherichia coli Infections
Fluoroquinolones
Pandemics
beta-Lactamases
Virulence

To the editor

Johnson, J. R. Feb 9 2017 In : New England Journal of Medicine. 376, 6, p. 598 1 p.

Research output: Research - peer-reviewLetter

1 Citations
Pyuria
Bacteriuria
Therapeutics
2016
1 Citations
Veterans
Genotype
Escherichia coli
Phenotype
7-fluoro-9-pyrrolidinoacetamido-6-demethyl-6-deoxytetracycline
2 Citations

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V. Jan 1 2016 In : Open Forum Infectious Diseases. 3, 1, ofw002

Research output: Research - peer-reviewArticle

Single Nucleotide Polymorphism
Urine
Escherichia coli
Bacterial Load
Sensitivity and Specificity
27 Citations

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J. Jan 1 2016 In : PLoS ONE. 11, 1, e0147210

Research output: Research - peer-reviewArticle

feces composition
Clostridium difficile
bile acids
germination
microbiome
3 Citations
Cystitis
Urinary Tract Infections
Caregivers
Siblings
Plasmids
5 Citations
Clostridium difficile
households
pollution
infection
contamination
1 Citations

Epidemiology and characteristics of Escherichia coli sequence type 131 (ST131) from long-term care facility residents colonized intestinally with fluoroquinolone-resistant Escherichia coli

Han, J. H., Garrigan, C., Johnston, B., Nachamkin, I., Clabots, C., Bilker, W. B., Santana, E., Tolomeo, P., Maslow, J., Myers, J., Carson, L., Lautenbach, E. & Johnson, J. R. Jul 26 2016 (Accepted/In press) In : Diagnostic Microbiology and Infectious Disease.

Research output: Research - peer-reviewArticle

Fluoroquinolones
Long-Term Care
Epidemiology
Escherichia coli
Virulence Factors
12 Citations

Escherichia coli: An old friend with new tidings

Vila, J., Sáez-López, E., Johnson, J. R., Römling, U., Dobrindt, U., Cantón, R., Giske, C. G., Naas, T., Carattoli, A., Martínez-Medina, M., Bosch, J., Retamar, P., Rodríguez-Banõ, J., Baquero, F. & Soto, S. M. Jul 1 2016 In : FEMS Microbiology Reviews. 40, 4, p. 437-463 27 p.

Research output: Research - peer-reviewReview article

Virulence Factors
Virulence
Escherichia coli
Extraintestinal Pathogenic Escherichia coli
Escherichia coli Infections
1 Citations

Evaluation of CTX-M steady-state mRNA, mRNA half-life and protein production in various STs of Escherichia coli

Geyer, C. N., Fowler, R. C., Johnson, J. R., Johnston, B., Weissman, S. J., Hawkey, P. & Hanson, N. D. Mar 1 2016 In : Journal of Antimicrobial Chemotherapy. 71, 3, p. 607-616 10 p., dkv388

Research output: Research - peer-reviewArticle

Half-Life
Escherichia coli
Messenger RNA
Proteins
galantide
36 Citations

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

Stoesser, N. , Sheppard, A. E. , Pankhurst, L. , de Maio, N. , Moore, C. E. , Sebra, R. , Turner, P. , Anson, L. W. , Kasarskis, A. , Batty, E. M. , Kos, V. , Wilson, D. J. , Phetsouvanh, R. , Wyllie, D. , Sokurenko, E. , Manges, A. R. , Johnson, T. J. , Price, L. B. , Peto, T. E. A. , Johnson, J. R. & 4 others Didelot, X., Sarah Walker, A., Crook, D. W. & Modernizing Medical Microbiology Informatics Group (MMMIG) Mar 22 2016 In : mBio. 7, 2, e02162-15

Research output: Research - peer-reviewArticle

Clone Cells
Escherichia coli
Plasmids
Interspersed Repetitive Sequences
Fluoroquinolones
4 Citations

Household clustering of escherichia coli sequence type 131 clinical and fecal isolates according to whole genome sequence analysis

Johnson, J. R., Davis, G., Clabots, C., Johnston, B. D., Porter, S., DebRoy, C., Pomputius, W., Ender, P. T., Cooperstock, M., Slater, B. S., Banerjee, R., Miller, S., Kisiela, D., Sokurenko, E. V., Aziz, M. & Price, L. B. Jan 1 2016 In : Open Forum Infectious Diseases. 3, 3, ofw129

Research output: Research - peer-reviewArticle

Sequence Analysis
Cluster Analysis
Genome
Escherichia coli
Phylogeny
3 Citations

Important Complexities of the Antivirulence Target Paradigm: A Novel Ostensibly Resistance-Avoiding Approach for Treating Infections

Russo, T. A., Spellberg, B. & Johnson, J. R. Mar 15 2016 In : Journal of Infectious Diseases. 213, 6, p. 901-903 3 p.

Research output: Research - peer-reviewArticle

Infection
Pharmaceutical Preparations
Therapeutics
Microbiota
Bacteria
2 Citations

Isolation and characterization of Escherichia coli sequence type 131 and other antimicrobial-resistant Gram-negative bacilli from clinical stool samples from veterans

Mohamed, M., Clabots, C., Porter, S. B., Thuras, P. & Johnson, J. R. Aug 1 2016 In : Antimicrobial Agents and Chemotherapy. 60, 8, p. 4638-4645 8 p.

Research output: Research - peer-reviewArticle

Veterans
Bacillus
Escherichia coli
Fluoroquinolones
Cephalosporins
3 Citations

Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia

Vangchhia, B., Abraham, S., Bell, J. M., Collignon, P., Gibson, J. S., Ingram, P. R., Johnson, J. R., Kennedy, K., Trott, D. J., Turnidge, J. D. & Gordon, D. M. Nov 1 2016 In : Microbiology (United Kingdom). 162, 11, p. 1904-1912 9 p., 000367

Research output: Research - peer-reviewArticle

Meat
Virulence
Escherichia coli
Poultry
Pets
9 Citations

Prevalence and characteristics of Escherichia coli sequence type 131 and its H30 and H30Rx subclones: A multicenter study from Korea

Kim, S. Y., Park, Y. J., Johnson, J. R., Yu, J. K., Kim, Y. K. & Kim, Y. S. Feb 1 2016 In : Diagnostic Microbiology and Infectious Disease. 84, 2, p. 97-101 5 p.

Research output: Research - peer-reviewArticle

Korea
Multicenter Studies
Plasmids
Escherichia coli
Replicon
3 Citations

Prolonged colonisation with escherichia coli O25: ST131 versus other extended-spectrum beta-lactamase-producing E. coli in a long-term care facility with high endemic level of rectal colonisation, the Netherlands, 2013 to 2014

Overdevest, I., Haverkate, M., Veenemans, J., Hendriks, Y., Verhulst, C., Mulders, A., Couprie, W., Bootsma, M., Johnson, J. & Kluytmans, J. Oct 20 2016 In : Eurosurveillance. 21, 42

Research output: Research - peer-reviewArticle

Long-Term Care
beta-Lactamases
Netherlands
Escherichia coli
Reproduction
Long-Term Care
Veterans
Urinary Tract
Escherichia coli
Infection
11 Citations

The Pandemic H30 Subclone of Escherichia coli Sequence Type 131 Is Associated with Persistent Infections and Adverse Outcomes Independent from Its Multidrug Resistance and Associations with Compromised Hosts

Johnson, J. R., Thuras, P., Johnston, B. D., Weissman, S. J., Limaye, A. P., Riddell, K., Scholes, D., Tchesnokova, V. & Sokurenko, E. Jun 15 2016 In : Clinical Infectious Diseases. 62, 12, p. 1529-1536 8 p.

Research output: Research - peer-reviewArticle

Multiple Drug Resistance
Pandemics
Odds Ratio
Confidence Intervals
Escherichia coli
2015
15 Citations

Clinical and microbiological determinants of infection after transrectal prostate biopsy

Liss, M. A., Johnson, J. R., Porter, S. B., Johnston, B., Clabots, C., Gillis, K., Nseyo, U., Holden, M., Sakamoto, K. & Fierer, J. Jan 1 2015 In : Clinical Infectious Diseases. 60, 7, p. 979-987 9 p.

Research output: Research - peer-reviewArticle

Prostate
Biopsy
Infection
Fluoroquinolones
Escherichia coli
16 Citations
Methicillin
Long-Term Care
Enterobacteriaceae
beta-Lactamases
Staphylococcus aureus
2 Citations

Colonization with Escherichia coli strains among female sex partners of men with febrile urinary tract infection

Ulleryd, P., Sandberg, T., Scheutz, F., Clabots, C., Johnston, B. D., Thuras, P. & Johnson, J. R. Jan 1 2015 In : Journal of Clinical Microbiology. 53, 6, p. 1947-1950 4 p.

Research output: Research - peer-reviewArticle

Urinary Tract Infections
Fever
Escherichia coli
Virulence
Genes
10 Citations

Diagnostic Errors that Lead to Inappropriate Antimicrobial Use

Filice, G. A., Drekonja, D. M., Thurn, J. R., Hamann, G. M., Masoud, B. T. & Johnson, J. R. Jan 1 2015 In : Infection Control and Hospital Epidemiology. 36, 8, p. 949-956 8 p.

Research output: Research - peer-reviewArticle

Diagnostic Errors
Inpatients
Signs and Symptoms
Therapeutics
Veterans Hospitals
Fluoroquinolones
Escherichia coli
9 Citations

Extensive household outbreak of urinary tract infection and intestinal colonization due to extended-spectrum β-lactamase-producing Escherichia coli sequence type 131

Madigan, T., Johnson, J. R., Clabots, C., Johnston, B. D., Porter, S. B., Slater, B. S. & Banerjee, R. Jul 1 2015 In : Clinical Infectious Diseases. 61, 1, p. e5-e12

Research output: Research - peer-reviewArticle

beta-Lactamases
Urinary Tract Infections
Disease Outbreaks
Escherichia coli
Virulence
18 Citations

Extensive within-host diversity in fecally carried extended-spectrum-beta-lactamase-producing Escherichia coli Isolates: Implications for transmission analyses

Stoesser, N., Sheppard, A. E., Moore, C. E., Golubchik, T., Parry, C. M., Nget, P., Saroeun, M., Day, N. P. J., Giess, A., Johnson, J. R., Peto, T. E. A., Crook, D. W. & Walker, A. S. Jul 1 2015 In : Journal of Clinical Microbiology. 53, 7, p. 2122-2131 10 p.

Research output: Research - peer-reviewArticle

beta-Lactamases
Escherichia coli
Genome
Clone Cells
Genes
1 Citations

Extraintestinal pathogenic and antimicrobial-resistant Escherichia coli contamination of 56 public restrooms in the greater Minneapolis-St. Paul metropolitan area

Mohamed, M., Owens, K., Gajewski, A., Clabots, C., Johnston, B., Thuras, P., Kuskowski, M. A. & Johnson, J. R. Jan 1 2015 In : Applied and Environmental Microbiology. 81, 13, p. 4498-4506 9 p.

Research output: Research - peer-reviewArticle

virulence
metropolitan area
public
contamination
anti-infective agents
18 Citations

First detection of extended-spectrum cephalosporin- and fluoroquinolone-resistant Escherichia coli in Australian food-producing animals

Abraham, S., Jordan, D., Wong, H. S., Johnson, J. R., Toleman, M. A., Wakeham, D. L., Gordon, D. M., Turnidge, J. D., Mollinger, J. L., Gibson, J. S. & Trott, D. J. Dec 1 2015 In : Journal of Global Antimicrobial Resistance. 3, 4, p. 273-277 5 p.

Research output: Research - peer-reviewArticle

Fluoroquinolones
Cephalosporins
Escherichia coli
Food
Swine
5 Citations

Genetic structure and antimicrobial resistance of Escherichia coli and cryptic clades in birds with diverse human associations

Blyton, M. D. J., Pi, H., Vangchhia, B., Abraham, S., Trott, D. J., Johnson, J. R. & Gordon, D. M. Jan 1 2015 In : Applied and Environmental Microbiology. 81, 15, p. 5123-5133 11 p.

Research output: Research - peer-reviewArticle

antibiotic resistance
Escherichia coli
birds
Genetic Structures
Birds
2 Citations

Greater ciprofloxacin tolerance as a possible selectable phenotype underlying the pandemic spread of the H30 subclone of Escherichia coli sequence type 131

Johnson, J. R., Porter, S. B., Thuras, P., Johnson, T. J., Price, L. B., Tchesnokova, V. & Sokurenko, E. V. Nov 1 2015 In : Antimicrobial Agents and Chemotherapy. 59, 11, p. 7132-7135 4 p.

Research output: Research - peer-reviewArticle

Pandemics
Ciprofloxacin
Escherichia coli
Phenotype
Fluoroquinolones
11 Citations

Gut colonization of healthy children and their mothers with pathogenic ciprofloxacin-resistant Escherichia coli

Gurnee, E. A., Ndao, I. M., Johnson, J. R., Johnston, B. D., Gonzalez, M. D., Burnham, C. A. D., Hall-Moore, C. M., McGhee, J. E., Mellmann, A., Warner, B. B. & Tarr, P. I. Jan 1 2015 In : Journal of Infectious Diseases. 212, 12, p. 1862-1868 7 p.

Research output: Research - peer-reviewArticle

Ciprofloxacin
Mothers
Escherichia coli
Anti-Bacterial Agents
Virulence
15 Citations

Human-associated fluoroquinolone-resistant Escherichia coli clonal lineages, including ST354, isolated from canine feces and extraintestinal infections in Australia

Guo, S., Wakeham, D., Brouwers, H. J. M., Cobbold, R. N., Abraham, S., Mollinger, J. L., Johnson, J. R., Chapman, T. A., Gordon, D. M., Barrs, V. R. & Trott, D. J. Apr 1 2015 In : Microbes and Infection. 17, 4, p. 266-274 9 p.

Research output: Research - peer-reviewArticle

Fluoroquinolones
Feces
Canidae
Dogs
Escherichia coli
17 Citations
Fluoroquinolones
Escherichia coli
Norfloxacin
Ciprofloxacin
Mutation
13 Citations

Intermingled Klebsiella pneumoniae Populations between Retail Meats and Human Urinary Tract Infections

Davis, G. S., Waits, K., Nordstrom, L., Weaver, B., Aziz, M., Gauld, L., Grande, H., Bigler, R., Horwinski, J., Porter, S., Stegger, M., Johnson, J. R., Liu, C. M. & Price, L. B. Jun 8 2015 In : Clinical Infectious Diseases. 61, 6, p. 892-899 8 p.

Research output: Research - peer-reviewArticle

Klebsiella pneumoniae
Urinary Tract Infections
Meat
Population
Virulence
12 Citations

Long-term care facilities are reservoirs for antimicrobial-resistant sequence type 131 Escherichia coli

Burgess, M. J., Johnson, J. R., Porter, S. B., Johnston, B., Clabots, C., Lahr, B. D., Uhl, J. R. & Banerjee, R. 2015 In : Open Forum Infectious Diseases. 2, 1, ofv011

Research output: Research - peer-reviewArticle

Long-Term Care
Escherichia coli
Pulsed Field Gel Electrophoresis
Fluoroquinolones
Odds Ratio
8 Citations

Reservoirs of extraintestinal pathogenic Escherichia coli

Manges, A. R. & Johnson, J. R. Jan 1 2015 In : Microbiology Spectrum. 3, 5, UTI-0006-2012

Research output: Research - peer-reviewArticle

Extraintestinal Pathogenic Escherichia coli
food
animal
Food
meat