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  • James R Johnson
Article

Accessory traits and phylogenetic background predict Escherichia coli extraintestinal virulence better than does ecological source

Johnson, J. R., Johnston, B. D., Porter, S., Thuras, P., Aziz, M. & Price, L. B., Jan 1 2019, In : Journal of Infectious Diseases. 219, 1, p. 121-132 12 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
Open Access
1 Scopus citations
Open Access
9 Scopus citations

Activity of imipenem-relebactam against carbapenem-resistant Escherichia coli isolates from the United States in relation to clonal background, resistance genes, coresistance, and region

Johnston, B. D., Thuras, P., Porter, S. B., Anacker, M., VonBank, B., Vagnone, P. S., Witwer, M., Castanheira, M. & Johnson, J. R., May 2020, In : Antimicrobial agents and chemotherapy. 64, 5, e02408-19.

Research output: Contribution to journalArticle

Acute pyelonephritis in adults

Johnson, J. R. & Russo, T. A., Jan 4 2018, In : New England Journal of Medicine. 378, 1, p. 48-59 12 p.

Research output: Contribution to journalArticle

19 Scopus citations

Alpha-toxin contributes to biofilm formation among Staphylococcus aureus wound isolates

Anderson, M. J., Schaaf, E., Breshears, L. M., Wallis, H. W., Johnson, J. R., Tkaczyk, C., Sellman, B. R., Sun, J. & Peterson, M. L., Apr 2018, In : Toxins. 10, 4, 157.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations
4 Scopus citations

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection

Marsh, K. J., Mundy, L., Holter, J. J. & Johnson, J. R., Dec 2019, In : Diagnostic Microbiology and Infectious Disease. 95, 4, 114874.

Research output: Contribution to journalArticle

1 Scopus citations

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Mar 2017, In : PloS one. 12, 3, e0174132.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2016, In : PloS one. 11, 1, e0147210.

Research output: Contribution to journalArticle

Open Access
61 Scopus citations

Clinical and molecular correlates of Escherichia coli bloodstream infection from two geographically diverse centers in Rochester, Minnesota, and Singapore

Mendis, S. M., Vasoo, S., Johnston, B. D., Porter, S. B., Cunningham, S. A., Menon, S. R., Teng, C. B., De, P. P., Patel, R., Johnson, J. R. & Banerjee, R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00937.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R., Apr 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Contribution to journalArticle

6 Scopus citations
Open Access
7 Scopus citations
Open Access
8 Scopus citations

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization

Kline, S. E., Sanstead, E. C., Johnson, J. R. & Kulasingam, S. L., Nov 1 2018, In : Infection Control and Hospital Epidemiology. 39, 11, p. 1340-1346 7 p.

Research output: Contribution to journalArticle

1 Scopus citations
Open Access
1 Scopus citations
Open Access

Draft genome sequences of five neonatal meningitis-causing Escherichia coli isolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

Xu, A., Johnson, J. R., Sheen, S. & Sommers, C., Apr 1 2018, In : Genome Announcements. 6, 16, e00091-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Draft genomic sequencing of six potential extraintestinal pathogenic Escherichia coli isolates from retail chicken meat

Xu, A., Johnson, J. R., Sheen, S., Needleman, D. S. & Sommers, C., May 1 2018, In : Genome Announcements. 6, 21, e00449-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Emergence of enteroaggregative escherichia coli within the ST131 lineage as a cause of extraintestinal infections

Boll, E. J., Overballe-Petersen, S., Hasman, H., Roer, L., Ng, K., Scheutz, F., Hammerum, A. M., Dungu, A., Hansen, F., Johannesen, T. B., Johnson, A., Nair, D. T., Lilje, B., Hansen, D. S., Krogfelt, K. A., Johnson, T. J., Price, L. B., Johnson, J. R., Struve, C., Olesen, B. & 1 others, Stegger, M., 2020, In : mBio. 11, 3, e00353-20.

Research output: Contribution to journalArticle

Open Access
Open Access
16 Scopus citations

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00732.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Epidemiology and characteristics of Escherichia coli sequence type 131 (ST131) from long-term care facility residents colonized intestinally with fluoroquinolone-resistant Escherichia coli

Han, J. H., Garrigan, C., Johnston, B., Nachamkin, I., Clabots, C., Bilker, W. B., Santana, E., Tolomeo, P., Maslow, J., Myers, J., Carson, L., Lautenbach, E. & Johnson, J. R., Mar 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 3, p. 275-280 6 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
17 Scopus citations

Escherichia coli sequence type 131 H30 is the main driver of emerging extended-spectrum-β-lactamase-producing E. coli at a tertiary care center

Johnson, J. R., Johnston, B., Thuras, P., Launer, B., Sokurenko, E. V. & Miller, L. G., Nov 1 2016, In : mSphere. 1, 6, e00314-16.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Escherichia coli ST131-H22 as a foodborne uropathogen

Liu, C. M., Stegger, M., Aziz, M., Johnson, T. J., Waits, K., Nordstrom, L., Gauld, L., Weaver, B., Rolland, D., Statham, S., Horwinski, J., Sariya, S., Davis, G. S., Sokurenko, E., Keim, P., Johnson, J. R. & Price, L. B., Jul 1 2018, In : mBio. 9, 4, e00470-18.

Research output: Contribution to journalArticle

Open Access
32 Scopus citations

Evaluation of CTX-M steady-state mRNA, mRNA half-life and protein production in various STs of Escherichia coli

Geyer, C. N., Fowler, R. C., Johnson, J. R., Johnston, B., Weissman, S. J., Hawkey, P. & Hanson, N. D., Mar 1 2016, In : Journal of Antimicrobial Chemotherapy. 71, 3, p. 607-616 10 p., dkv388.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Evaluation of Escherichia coli isolates from healthy chickens to determine their potential risk to poultry and human health

Stromberg, Z. R., Johnson, J. R., Fairbrother, J. M., Kilbourne, J., Van Goor, A., Curtiss, R. & Mellata, M., Jul 2017, In : PloS one. 12, 7, e0180599.

Research output: Contribution to journalArticle

Open Access
31 Scopus citations

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

Modernizing Medical Microbiology Informatics Group (MMMIG), Mar 22 2016, In : mBio. 7, 2, e02162-15.

Research output: Contribution to journalArticle

Open Access
118 Scopus citations

Extensive genetic commonality among wildlife, wastewater, community, and nosocomial isolates of Escherichia coli sequence type 131 (H30R1 and H30Rx Subclones) That Carry blaCTX-M-27 or blaCTX-M-15

Jamborova, I., Johnston, B. D., Papousek, I., Kachlikova, K., Micenkova, L., Clabots, C., Skalova, A., Chudejova, K., Dolejska, M., Literak, I. & Johnson, J. R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00519.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations
Open Access
14 Scopus citations

Fine-scale structure analysis shows epidemic patterns of clonal complex 95, a cosmopolitan Escherichia coli lineage responsible for extraintestinal infection

Gordon, D. M., Geyik, S., Clermont, O., O'Brien, C. L., Huang, S., Abayasekara, C., Rajesh, A., Kennedy, K., Collignon, P., Pavli, P., Rodriguez, C., Johnston, B. D., Johnson, J. R., Decousser, J. W. & Denamur, E., May 1 2017, In : mSphere. 2, 3, e00168-17.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains

Stephens, C. M., Adams-Sapper, S., Sekhon, M., Johnson, J. R. & Riley, L. W., Mar 1 2017, In : mSphere. 2, 2, e00390-16.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats

Kidsley, A. K., O'Dea, M., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Saputra, S., Jordan, D., Johnson, J. R., Gordon, D., Turni, C., Djordjevic, S. P., Abraham, S. & Trott, D. J., Jun 2020, In : Veterinary Microbiology. 245, 108685.

Research output: Contribution to journalArticle

Genomic analysis of multidrug-resistant Escherichia coli from North Carolina community hospitals: Ongoing circulation of CTX-M-producing ST131-H30Rx and ST131-H30R1 Strains

Kanamori, H., Parobek, C. M., Juliano, J. J., Johnson, J. R., Johnston, B. D., Johnson, T., Weber, D. J., Rutala, W. A. & Anderson, D. J., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00912.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations

Gram-negative bacterial infections: Research priorities, accomplishments, and future directions of the Antibacterial Resistance Leadership Group

Doi, Y., Bonomo, R. A., Hooper, D. C., Kaye, K. S., Johnson, J. R., Clancy, C. J., Thaden, J. T., Stryjewski, M. E. & Van Duin, D., Jan 1 2017, In : Clinical Infectious Diseases. 64, p. S30-S35

Research output: Contribution to journalArticle

Open Access
43 Scopus citations

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: A prospective study using whole-genome sequencing

Coussement, J., Argudín, M. A., Heinrichs, A., Racapé, J., de Mendonça, R., Nienhaus, L., Le Moine, A., Roisin, S., Dodémont, M., Jacobs, F., Abramowicz, D., Johnston, B. D., Johnson, J. R. & Denis, O., Jan 1 2019, In : Nephrology Dialysis Transplantation. 34, 5, p. 878-885 8 p.

Research output: Contribution to journalArticle

Household clustering of escherichia coli sequence type 131 clinical and fecal isolates according to whole genome sequence analysis

Johnson, J. R., Davis, G., Clabots, C., Johnston, B. D., Porter, S., DebRoy, C., Pomputius, W., Ender, P. T., Cooperstock, M., Slater, B. S., Banerjee, R., Miller, S., Kisiela, D., Sokurenko, E. V., Aziz, M. & Price, L. B., 2016, In : Open Forum Infectious Diseases. 3, 3, ofw129.

Research output: Contribution to journalArticle

Open Access
19 Scopus citations

Identification of biomarkers for differentiation of hypervirulent klebsiella pneumoniae from classical K. pneumoniae

Russo, T. A., Olson, R., Fang, C. T., Stoesser, N., Miller, M., MacDonald, U., Hutson, A., Barker, J. H., La Hoz, R. M., Johnson, J. R., Backer, M., Bajwa, R., Catanzaro, A. T., Crook, D., De Almeida, K., Fierer, J., Greenberg, D. E., Klevay, M., Patel, P., Ratner, A. & 2 others, Wang, J. T. & Zola, J., Sep 2018, In : Journal of clinical microbiology. 56, 9, e00776.

Research output: Contribution to journalArticle

Open Access
43 Scopus citations

Important Complexities of the Antivirulence Target Paradigm: A Novel Ostensibly Resistance-Avoiding Approach for Treating Infections

Russo, T. A., Spellberg, B. & Johnson, J. R., Mar 15 2016, In : Journal of Infectious Diseases. 213, 6, p. 901-903 3 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation

Xu, A., Scullen, O. J., Sheen, S., Johnson, J. R. & Sommers, C. H., Dec 2019, In : Food Microbiology. 84, 103264.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Inactivation of transcriptional regulators during withinhousehold evolution of Escherichia coli

Kisiela, D. I., Radey, M., Paul, S., Porter, S., Polukhina, K., Tchesnokova, V., Shevchenko, S., Chan, D., Aziz, M., Johnson, T. J., Price, L. B., Johnson, J. R. & Sokurenko, E. V., Jul 1 2017, In : Journal of bacteriology. 199, 13, e00036-17.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
Open Access
3 Scopus citations

Molecularly defined extraintestinal pathogenic Escherichia coli status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among E. coli ST131 isolates

Merino, I., Porter, S. B., Johnston, B., Clabots, C., Thuras, P., Ruiz-Garbajosa, P., Cantón, R. & Johnson, J. R., Jan 1 2020, In : Virulence. 11, 1, p. 327-336 10 p.

Research output: Contribution to journalArticle

Open Access
Open Access
3 Scopus citations

Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia

Vangchhia, B., Abraham, S., Bell, J. M., Collignon, P., Gibson, J. S., Ingram, P. R., Johnson, J. R., Kennedy, K., Trott, D. J., Turnidge, J. D. & Gordon, D. M., Nov 2016, In : Microbiology (United Kingdom). 162, 11, p. 1904-1912 9 p., 000367.

Research output: Contribution to journalArticle

Open Access
18 Scopus citations