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  • James R Johnson

Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli

Johnson, J. R., Tchesnokova, V., Johnston, B., Clabots, C., Roberts, P. L., Billig, M., Riddell, K., Rogers, P., Qin, X., Butler-Wu, S., Price, L. B., Aziz, M., Nicolas-Chanoine, M. H., Debroy, C., Robicsek, A., Hansen, G., Urban, C., Platell, J., Trott, D. J., Zhanel, G. & 8 others, Weissman, S. J., Cookson, B. T., Fang, F. C., Limaye, A. P., Scholes, D., Chattopadhyay, S., Hooper, D. C. & Sokurenko, E. V., 2013, In : Journal of Infectious Diseases. 207, 6, p. 919-928 10 p.

Research output: Contribution to journalArticle

170 Scopus citations

Accessory traits and phylogenetic background predict Escherichia coli extraintestinal virulence better than does ecological source

Johnson, J. R., Johnston, B. D., Porter, S., Thuras, P., Aziz, M. & Price, L. B., Jan 1 2019, In : Journal of Infectious Diseases. 219, 1, p. 121-132 12 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
Open Access
1 Scopus citations
Open Access
9 Scopus citations

Activity of imipenem-relebactam against carbapenem-resistant Escherichia coli isolates from the United States in relation to clonal background, resistance genes, coresistance, and region

Johnston, B. D., Thuras, P., Porter, S. B., Anacker, M., VonBank, B., Vagnone, P. S., Witwer, M., Castanheira, M. & Johnson, J. R., May 2020, In : Antimicrobial agents and chemotherapy. 64, 5, e02408-19.

Research output: Contribution to journalArticle

Acute pyelonephritis in adults

Johnson, J. R. & Russo, T. A., Jan 4 2018, In : New England Journal of Medicine. 378, 1, p. 48-59 12 p.

Research output: Contribution to journalArticle

19 Scopus citations

Alpha-toxin contributes to biofilm formation among Staphylococcus aureus wound isolates

Anderson, M. J., Schaaf, E., Breshears, L. M., Wallis, H. W., Johnson, J. R., Tkaczyk, C., Sellman, B. R., Sun, J. & Peterson, M. L., Apr 2018, In : Toxins. 10, 4, 157.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations
4 Scopus citations

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection

Marsh, K. J., Mundy, L., Holter, J. J. & Johnson, J. R., Dec 2019, In : Diagnostic Microbiology and Infectious Disease. 95, 4, 114874.

Research output: Contribution to journalArticle

1 Scopus citations

A new clone sweeps clean: The enigmatic emergence of Escherichia coli sequence type 131

Banerjee, R. & Johnson, J. R., Sep 2014, In : Antimicrobial agents and chemotherapy. 58, 9, p. 4997-5004 8 p.

Research output: Contribution to journalShort survey

116 Scopus citations

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Antimicrobial use and risk for recurrent clostridium difficile infection

Drekonja, D. M., Amundson, W. H., Decarolis, D. D., Kuskowski, M. A., Lederle, F. A. & Johnson, J. R., Nov 1 2011, In : American Journal of Medicine. 124, 11

Research output: Contribution to journalArticle

43 Scopus citations

Associations between multidrug resistance, plasmid content, and virulence potential among extraintestinal pathogenic and commensal Escherichia coli from humans and poultry

Johnson, T. J., Logue, C. M., Johnson, J. R., Kuskowski, M. A., Sherwood, J. S., Barnes, H. J., Debroy, C., Wannemuehler, Y. M., Obata-Yasuoka, M., Spanjaard, L. & Nolan, L. K., Jan 1 2012, In : Foodborne pathogens and disease. 9, 1, p. 37-46 10 p.

Research output: Contribution to journalArticle

68 Scopus citations

A survey of resident physicians' knowledge regarding urine testing and subsequent antimicrobial treatment

Drekonja, D. M., Abbo, L. M., Kuskowski, M. A., Gnadt, C., Shukla, B. & Johnson, J. R., Oct 1 2013, In : American journal of infection control. 41, 10, p. 892-896 5 p.

Research output: Contribution to journalArticle

24 Scopus citations

Asymptomatic Bacteriuria

Johnson, J. R., May 17 2018, In : Clinical Infectious Diseases. 66, 11, p. 1816-1817 2 p.

Research output: Contribution to journalLetter

Open Access
13 Scopus citations

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Mar 2017, In : PloS one. 12, 3, e0174132.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations
Open Access
4 Scopus citations

Carbapenemase-producing bacteria in companion animals: A public health concern on the horizon

Abraham, S., Wong, H. S., Turnidge, J., Johnson, J. R. & Trott, D. J., May 2014, In : Journal of Antimicrobial Chemotherapy. 69, 5, p. 1155-1157 3 p., dkt518.

Research output: Contribution to journalArticle

41 Scopus citations

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2016, In : PloS one. 11, 1, e0147210.

Research output: Contribution to journalArticle

Open Access
61 Scopus citations

Clinical and microbiological determinants of infection after transrectal prostate biopsy

Liss, M. A., Johnson, J. R., Porter, S. B., Johnston, B., Clabots, C., Gillis, K., Nseyo, U., Holden, M., Sakamoto, K. & Fierer, J., Apr 1 2015, In : Clinical Infectious Diseases. 60, 7, p. 979-987 9 p.

Research output: Contribution to journalArticle

27 Scopus citations

Clinical and molecular correlates of Escherichia coli bloodstream infection from two geographically diverse centers in Rochester, Minnesota, and Singapore

Mendis, S. M., Vasoo, S., Johnston, B. D., Porter, S. B., Cunningham, S. A., Menon, S. R., Teng, C. B., De, P. P., Patel, R., Johnson, J. R. & Banerjee, R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00937.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Clinical and molecular correlates of virulence in Escherichia coli causing bloodstream infection following transrectal ultrasound-guided (TRUS) prostate biopsy

Williamson, D. A., Freeman, J. T., Porter, S., Roberts, S., Wiles, S., Paterson, D. L. & Johnson, J. R., Dec 1 2013, In : Journal of Antimicrobial Chemotherapy. 68, 12, p. 2898-2906 9 p., dkt276.

Research output: Contribution to journalArticle

18 Scopus citations
6 Scopus citations

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R., Apr 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Contribution to journalArticle

6 Scopus citations

Clonal identity of Escherichia coli as a predictive factor for recurrent cystitis

Sokurenko, E. & Johnson, J. R., Jan 1 2011, In : Virulence. 2, 6, p. 495-497 3 p.

Research output: Contribution to journalEditorial

31 Scopus citations

Colonization with Escherichia coli strains among female sex partners of men with febrile urinary tract infection

Ulleryd, P., Sandberg, T., Scheutz, F., Clabots, C., Johnston, B. D., Thuras, P. & Johnson, J. R., Jun 1 2015, In : Journal of clinical microbiology. 53, 6, p. 1947-1950 4 p.

Research output: Contribution to journalArticle

7 Scopus citations

Commonality among fluoroquinolone-resistant sequence type ST131 extraintestinal Escherichia coli isolates from humans and companion animals in Australia

Platell, J. L., Cobbold, R. N., Johnson, J. R., Heisig, A., Heisig, P., Clabots, C., Kuskowski, M. A. & Trott, D. J., Aug 1 2011, In : Antimicrobial agents and chemotherapy. 55, 8, p. 3782-3787 6 p.

Research output: Contribution to journalArticle

82 Scopus citations

Community-associated Escherichia coli harboring CTX-M β-lactamases from urine cultures from pediatric patients

Woods, K. L., Johnson, J. R., Padkowsky, S., Mariano, N., Colon-Urban, R., Hassanein, M., Wehbeh, W., Johnston, B. D., Clabots, C., Zahid, S. & Urban, C., Apr 1 2012, In : Antimicrobial agents and chemotherapy. 56, 4, p. 2209-2210 2 p.

Research output: Contribution to journalLetter

5 Scopus citations

Community transmission in the United States of a CTX-M-15-producing sequence type ST131 Escherichia coli strain resulting in death

Owens, R. C., Johnson, J. R., Stogsdill, P., Yarmus, L., Lolans, K. & Quinn, J., Sep 1 2011, In : Journal of clinical microbiology. 49, 9, p. 3406-3408 3 p.

Research output: Contribution to journalArticle

42 Scopus citations
Open Access
7 Scopus citations

Comparison of Escherichia coli ST131 pulsotypes, by epidemiologic traits, 1967-2009

Johnson, J. R., Nicolas-Chanoine, M. H., Deb Roy, C., Castanheira, M., Robicsek, A., Hansen, G., Weissman, S., Urban, C., Platell, J., Trott, D., Zhanel, G., Clabots, C., Johnston, B. D. & Kuskowski, M. A., Apr 1 2012, In : Emerging infectious diseases. 18, 4, p. 598-607 10 p.

Research output: Contribution to journalArticle

80 Scopus citations
Open Access
8 Scopus citations

Complete genome sequence of the epidemic and highly virulent CTX-M-15-producing H30-Rx subclone of Escherichia coli ST131

Andersen, P. S., Stegger, M., Aziz, M., Contente-Cuomo, T., Gibbons, H. S., Keim, P., Sokurenko, E. V., Johnson, J. R. & Price, L. B., 2013, In : Genome Announcements. 1, 6, e00988-13.

Research output: Contribution to journalArticle

32 Scopus citations

Complications of Foley catheters - Is infection the greatest risk?

Leuck, A-M., Wright, D., Ellingson, L., Kraemer, L., Kuskowski, M. A. & Johnson, J. R., May 1 2012, In : Journal of Urology. 187, 5, p. 1662-1666 5 p.

Research output: Contribution to journalArticle

74 Scopus citations

Confusion and Bacteriuria in Long-Term Care Facility Residents

Johnson, J. R., Jun 2018, In : Journal of the American Geriatrics Society. 66, 6, 1 p.

Research output: Contribution to journalLetter

Open Access

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization

Kline, S. E., Sanstead, E. C., Johnson, J. R. & Kulasingam, S. L., Nov 1 2018, In : Infection Control and Hospital Epidemiology. 39, 11, p. 1340-1346 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

CTX-M-27- and CTX-M-14-producing, ciprofloxacin-resistant Escherichia coli of the H30 subclonal group within ST131 drive a Japanese regional ESBL epidemic

on behalf of the Kyoto-Shiga Clinical Microbiology Study Group, Nov 12 2014, In : Journal of Antimicrobial Chemotherapy. 70, 6, p. 1639-1649 11 p.

Research output: Contribution to journalArticle

56 Scopus citations

Definition of complicated urinary tract infection

Johnson, J. R., Feb 15 2017, In : Clinical Infectious Diseases. 64, 4, 1 p.

Research output: Contribution to journalLetter

Open Access
2 Scopus citations

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Open Access
1 Scopus citations

Delirium in hospitalized older adults

Johnson, J. R., Jan 4 2018, In : New England Journal of Medicine. 378, 1, 1 p.

Research output: Contribution to journalLetter

4 Scopus citations
Open Access
1 Scopus citations
Open Access

Diagnosis and treatment of acute pyelonephritis in women

Colgan, R., Williams, M. & Johnson, J. R., Sep 1 2011, In : American Family Physician. 84, 5, p. 519-526 8 p.

Research output: Contribution to journalArticle

33 Scopus citations

Diagnostic Errors that Lead to Inappropriate Antimicrobial Use

Filice, G. A., Drekonja, D. M., Thurn, J. R., Hamann, G. M., Masoud, B. T. & Johnson, J. R., Jan 1 2015, In : Infection Control and Hospital Epidemiology. 36, 8, p. 949-956 8 p.

Research output: Contribution to journalArticle

18 Scopus citations

Distribution of phylogenetic groups, sequence type ST131, and virulence-associated traits among Escherichia coli isolates from men with pyelonephritis or cystitis and healthy controls

Kudinha, T., Johnson, J. R., Andrew, S. D., Kong, F., Anderson, P. & Gilbert, G. L., Apr 2013, In : Clinical Microbiology and Infection. 19, 4, p. E173-E180

Research output: Contribution to journalArticle

32 Scopus citations

Do not abandon cultures

Johnson, J. R., Jun 27 2011, In : Archives of Internal Medicine. 171, 12, 1 p.

Research output: Contribution to journalLetter