Find Research Outputs

Search in all content

Filters for Research Output

Search concepts
Selected Filters

Publication Year

  • 2020
  • 2019
  • 2018
  • 2017
  • 2016

Author

  • James R Johnson
2018
16 Scopus citations
2017

Genomic analysis of multidrug-resistant Escherichia coli from North Carolina community hospitals: Ongoing circulation of CTX-M-producing ST131-H30Rx and ST131-H30R1 Strains

Kanamori, H., Parobek, C. M., Juliano, J. J., Johnson, J. R., Johnston, B. D., Johnson, T., Weber, D. J., Rutala, W. A. & Anderson, D. J., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00912.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations

Rapid and specific detection of the Escherichia coli sequence type 648 complex within phylogroup F

Johnson, J. R., Johnston, B. D. & Gordon, D. M., Apr 2017, In : Journal of clinical microbiology. 55, 4, p. 1116-1121 6 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations
2016
Open Access
9 Scopus citations
2020

Activity of imipenem-relebactam against carbapenem-resistant Escherichia coli isolates from the United States in relation to clonal background, resistance genes, coresistance, and region

Johnston, B. D., Thuras, P., Porter, S. B., Anacker, M., VonBank, B., Vagnone, P. S., Witwer, M., Castanheira, M. & Johnson, J. R., May 2020, In : Antimicrobial agents and chemotherapy. 64, 5, e02408-19.

Research output: Contribution to journalArticle

2017

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Open Access
1 Scopus citations
2016

Important Complexities of the Antivirulence Target Paradigm: A Novel Ostensibly Resistance-Avoiding Approach for Treating Infections

Russo, T. A., Spellberg, B. & Johnson, J. R., Mar 15 2016, In : Journal of Infectious Diseases. 213, 6, p. 901-903 3 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
2019

Accessory traits and phylogenetic background predict Escherichia coli extraintestinal virulence better than does ecological source

Johnson, J. R., Johnston, B. D., Porter, S., Thuras, P., Aziz, M. & Price, L. B., Jan 1 2019, In : Journal of Infectious Diseases. 219, 1, p. 121-132 12 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2017

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Mar 2017, In : PloS one. 12, 3, e0174132.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00732.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations
2019

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation

Xu, A., Scullen, O. J., Sheen, S., Johnson, J. R. & Sommers, C. H., Dec 2019, In : Food Microbiology. 84, 103264.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
2017
1 Scopus citations
2020

Molecularly defined extraintestinal pathogenic Escherichia coli status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among E. coli ST131 isolates

Merino, I., Porter, S. B., Johnston, B., Clabots, C., Thuras, P., Ruiz-Garbajosa, P., Cantón, R. & Johnson, J. R., Jan 1 2020, In : Virulence. 11, 1, p. 327-336 10 p.

Research output: Contribution to journalArticle

Open Access
2018

Delirium in hospitalized older adults

Johnson, J. R., Jan 4 2018, In : New England Journal of Medicine. 378, 1, 1 p.

Research output: Contribution to journalLetter

4 Scopus citations
2017

Inactivation of transcriptional regulators during withinhousehold evolution of Escherichia coli

Kisiela, D. I., Radey, M., Paul, S., Porter, S., Polukhina, K., Tchesnokova, V., Shevchenko, S., Chan, D., Aziz, M., Johnson, T. J., Price, L. B., Johnson, J. R. & Sokurenko, E. V., Jul 1 2017, In : Journal of bacteriology. 199, 13, e00036-17.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
2019
Open Access
2018

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Extensive genetic commonality among wildlife, wastewater, community, and nosocomial isolates of Escherichia coli sequence type 131 (H30R1 and H30Rx Subclones) That Carry blaCTX-M-27 or blaCTX-M-15

Jamborova, I., Johnston, B. D., Papousek, I., Kachlikova, K., Micenkova, L., Clabots, C., Skalova, A., Chudejova, K., Dolejska, M., Literak, I. & Johnson, J. R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00519.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations
2016

Separate F-type plasmids have shaped the evolution of the H30 subclone of Escherichia coli sequence type 131

Johnson, T. J., Danzeisen, J. L., Youmans, B., Case, K., Llop, K., Munoz-Aguayo, J., Flores-Figueroa, C., Aziz, M., Stoesser, N., Sokurenko, E., Price, L. B. & Johnson, J. R., Jul 1 2016, In : mSphere. 1, 4, e00121-16.

Research output: Contribution to journalArticle

Open Access
35 Scopus citations
2018
Open Access
1 Scopus citations
2019
4 Scopus citations
2018

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization

Kline, S. E., Sanstead, E. C., Johnson, J. R. & Kulasingam, S. L., Nov 1 2018, In : Infection Control and Hospital Epidemiology. 39, 11, p. 1340-1346 7 p.

Research output: Contribution to journalArticle

1 Scopus citations
2019

Prevalence of asymptomatic bacteriuria among kidney transplant recipients beyond two months post-transplant: A multicenter, prospective, cross-sectional study

Coussement, J., Scemla, A., Hougardy, J. M., Sberro-Soussan, R., Amrouche, L., Catalano, C., Johnson, J. R. & Abramowicz, D., Jan 1 2019, In : PloS one. 14, 9, e0221820.

Research output: Contribution to journalArticle

Open Access

Phylogenomic Analysis of Extraintestinal Pathogenic Escherichia coli Sequence Type 1193, an Emerging Multidrug-Resistant Clonal Group

Johnson, T., Elnekave, E., Miller, E. A., Munoz-Aguayo, J., Figueroa, C. F., Johnston, B. D., Nielson, D. W., Logue, C. M. & Johnson, J. R., Jan 2019, In : Antimicrobial agents and chemotherapy. 63, 1, e01913-18.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
2020
Open Access
1 Scopus citations
2018

Acute pyelonephritis in adults

Johnson, J. R. & Russo, T. A., Jan 4 2018, In : New England Journal of Medicine. 378, 1, p. 48-59 12 p.

Research output: Contribution to journalArticle

18 Scopus citations
2020

Infectious Pneumorachis Due to Clostridium septicum

Wongboonsin, J., Duran, A. & Johnson, J. R., Jan 1 2020, (Accepted/In press) In : Journal of general internal medicine.

Research output: Contribution to journalComment/debate

2016

Escherichia coli sequence type 131 H30 is the main driver of emerging extended-spectrum-β-lactamase-producing E. coli at a tertiary care center

Johnson, J. R., Johnston, B., Thuras, P., Launer, B., Sokurenko, E. V. & Miller, L. G., Nov 1 2016, In : mSphere. 1, 6, e00314-16.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations
2019

Rapid and Extensive Expansion in the United States of a New Multidrug-resistant Escherichia coli Clonal Group, Sequence Type 1193

Tchesnokova, V. L., Rechkina, E., Larson, L., Ferrier, K., Weaver, J. L., Schroeder, D. W., She, R., Butler-Wu, S. M., Aguero-Rosenfeld, M. E., Zerr, D., Fang, F. C., Ralston, J., Riddell, K., Scholes, D., Weissman, S., Parker, K., Spellberg, B., Johnson, J. R. & Sokurenko, E. V., Jan 7 2019, In : Clinical Infectious Diseases. 68, 2, p. 334-337 4 p.

Research output: Contribution to journalArticle

Open Access
18 Scopus citations
2018

Escherichia coli ST131-H22 as a foodborne uropathogen

Liu, C. M., Stegger, M., Aziz, M., Johnson, T. J., Waits, K., Nordstrom, L., Gauld, L., Weaver, B., Rolland, D., Statham, S., Horwinski, J., Sariya, S., Davis, G. S., Sokurenko, E., Keim, P., Johnson, J. R. & Price, L. B., Jul 1 2018, In : mBio. 9, 4, e00470-18.

Research output: Contribution to journalArticle

Open Access
27 Scopus citations
2019

The uropathogenic Escherichia coli subclone sequence type 131-H30 is responsible for most antibiotic prescription errors at an urgent care clinic

Tchesnokova, V., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Feb 15 2019, In : Clinical Infectious Diseases. 68, 5, p. 781-787 7 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
2018

Molecular Epidemiology of Extraintestinal Pathogenic Escherichia coli

Johnson, J. R. & Russo, T. A., Apr 1 2018, In : EcoSal Plus. 8, 1

Research output: Contribution to journalReview article

4 Scopus citations

Alpha-toxin contributes to biofilm formation among Staphylococcus aureus wound isolates

Anderson, M. J., Schaaf, E., Breshears, L. M., Wallis, H. W., Johnson, J. R., Tkaczyk, C., Sellman, B. R., Sun, J. & Peterson, M. L., Apr 2018, In : Toxins. 10, 4, 157.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
2016
Open Access
8 Scopus citations

The Pandemic H30 Subclone of Escherichia coli Sequence Type 131 Is Associated with Persistent Infections and Adverse Outcomes Independent from Its Multidrug Resistance and Associations with Compromised Hosts

Johnson, J. R., Thuras, P., Johnston, B. D., Weissman, S. J., Limaye, A. P., Riddell, K., Scholes, D., Tchesnokova, V. & Sokurenko, E., Jun 15 2016, In : Clinical Infectious Diseases. 62, 12, p. 1529-1536 8 p.

Research output: Contribution to journalArticle

Open Access
20 Scopus citations
2017

Gram-negative bacterial infections: Research priorities, accomplishments, and future directions of the Antibacterial Resistance Leadership Group

Doi, Y., Bonomo, R. A., Hooper, D. C., Kaye, K. S., Johnson, J. R., Clancy, C. J., Thaden, J. T., Stryjewski, M. E. & Van Duin, D., Jan 1 2017, In : Clinical Infectious Diseases. 64, p. S30-S35

Research output: Contribution to journalArticle

Open Access
42 Scopus citations
2016

Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia

Vangchhia, B., Abraham, S., Bell, J. M., Collignon, P., Gibson, J. S., Ingram, P. R., Johnson, J. R., Kennedy, K., Trott, D. J., Turnidge, J. D. & Gordon, D. M., Nov 2016, In : Microbiology (United Kingdom). 162, 11, p. 1904-1912 9 p., 000367.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations
2018

Asymptomatic Bacteriuria

Johnson, J. R., May 17 2018, In : Clinical Infectious Diseases. 66, 11, p. 1816-1817 2 p.

Research output: Contribution to journalLetter

Open Access

Resident physician knowledge of urine testing and treatment over four years

Andrews, S. L., Abbo, L. M., Johnson, J. R., Kuskowski, M. A., Shukla, B. S. & Drekonja, D. M., May 1 2018, In : Infection Control and Hospital Epidemiology. 39, 5, p. 616-618 3 p.

Research output: Contribution to journalArticle

Open Access
2017
Open Access
4 Scopus citations
2019

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection

Marsh, K. J., Mundy, L., Holter, J. J. & Johnson, J. R., Dec 2019, In : Diagnostic Microbiology and Infectious Disease. 95, 4, 114874.

Research output: Contribution to journalArticle

2016
Open Access
5 Scopus citations
2019
Open Access
2016

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

Modernizing Medical Microbiology Informatics Group (MMMIG), Mar 22 2016, In : mBio. 7, 2, e02162-15.

Research output: Contribution to journalArticle

Open Access
115 Scopus citations
2017
Open Access
25 Scopus citations

Virulence genes and subclone status as markers of experimental virulence in a murine sepsis model among Escherichia coli sequence type 131 clinical isolates from Spain

Merino, I., Porter, S. B., Johnston, B. D., Clabots, C., Shaw, E., Horcajada, J. P., Cantón, R., Ruiz-Garbajosa, P., Johnson, J. R. & ITUBRAS-GEIH group, Nov 2017, In : PloS one. 12, 11, e0188838.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2020

Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats

Kidsley, A. K., O'Dea, M., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Saputra, S., Jordan, D., Johnson, J. R., Gordon, D., Turni, C., Djordjevic, S. P., Abraham, S. & Trott, D. J., Jun 2020, In : Veterinary Microbiology. 245, 108685.

Research output: Contribution to journalArticle

2018

Identifying antibiotic- resistant infections

Drekonja, D. M. & Johnson, J. R., Jun 1 2018, In : Health Affairs. 37, 6, 1 p.

Research output: Contribution to journalLetter