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  • James R Johnson
2012

Rifapentine and isoniazid for latent tuberculosis [2]

Johnson, J. R., Apr 12 2012, In : New England Journal of Medicine. 366, 15, p. 1447-1448 2 p.

Research output: Contribution to journalLetter

2 Scopus citations
2015

Reservoirs of extraintestinal pathogenic Escherichia coli

Manges, A. R. & Johnson, J. R., Jan 1 2015, In : Microbiology Spectrum. 3, 5, UTI-0006-2012.

Research output: Contribution to journalArticle

22 Scopus citations
2018

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations
2012

Rifapentine and isoniazid for latent tuberculosis [1]

Johnson, J. R., Apr 12 2012, In : New England Journal of Medicine. 366, 15, p. 1447-1448 2 p.

Research output: Contribution to journalLetter

1 Scopus citations
2013

Fluoroquinolone-resistant extraintestinal pathogenic Escherichia coli, including O25b-ST131, isolated from faeces of hospitalized dogs in an Australian veterinary referral centre

Guo, S. Y., Brouwers, H. J. M., Cobbold, R. N., Platell, J. L., Chapman, T. A., Barrs, V. R., Johnson, J. R. & Trott, D. J., May 1 2013, In : Journal of Antimicrobial Chemotherapy. 68, 5, p. 1025-1031 7 p., dks515.

Research output: Contribution to journalArticle

11 Scopus citations
2014
13 Scopus citations
2019
Open Access
2011

Rates of mutation and host transmission for an escherichia coli clone over 3 years

Reeves, P. R., Liu, B., Zhou, Z., Li, D., Guo, D., Ren, Y., Clabots, C., Lan, R., Johnson, J. R. & Wang, L., Nov 2 2011, In : PloS one. 6, 10, e26907.

Research output: Contribution to journalArticle

64 Scopus citations
2013

Clinical and molecular correlates of virulence in Escherichia coli causing bloodstream infection following transrectal ultrasound-guided (TRUS) prostate biopsy

Williamson, D. A., Freeman, J. T., Porter, S., Roberts, S., Wiles, S., Paterson, D. L. & Johnson, J. R., Dec 1 2013, In : Journal of Antimicrobial Chemotherapy. 68, 12, p. 2898-2906 9 p., dkt276.

Research output: Contribution to journalArticle

18 Scopus citations
2020

Emergence of enteroaggregative escherichia coli within the ST131 lineage as a cause of extraintestinal infections

Boll, E. J., Overballe-Petersen, S., Hasman, H., Roer, L., Ng, K., Scheutz, F., Hammerum, A. M., Dungu, A., Hansen, F., Johannesen, T. B., Johnson, A., Nair, D. T., Lilje, B., Hansen, D. S., Krogfelt, K. A., Johnson, T. J., Price, L. B., Johnson, J. R., Struve, C., Olesen, B. & 1 others, Stegger, M., 2020, In : mBio. 11, 3, e00353-20.

Research output: Contribution to journalArticle

Open Access
2016

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2016, In : PloS one. 11, 1, e0147210.

Research output: Contribution to journalArticle

Open Access
61 Scopus citations
2011

Systematic review of the literature on comparative effectiveness of antiviral treatments for chronic hepatitis B infection

Shamliyan, T. A., Johnson, J. R., MacDonald, R., Shaukat, A., Yuan, J. M., Kane, R. L. & Wilt, T. J., Mar 1 2011, In : Journal of general internal medicine. 26, 3, p. 326-339 14 p.

Research output: Contribution to journalArticle

11 Scopus citations
2014

CTX-M-27- and CTX-M-14-producing, ciprofloxacin-resistant Escherichia coli of the H30 subclonal group within ST131 drive a Japanese regional ESBL epidemic

on behalf of the Kyoto-Shiga Clinical Microbiology Study Group, Nov 12 2014, In : Journal of Antimicrobial Chemotherapy. 70, 6, p. 1639-1649 11 p.

Research output: Contribution to journalArticle

56 Scopus citations
2017
Open Access
7 Scopus citations
2019

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: A prospective study using whole-genome sequencing

Coussement, J., Argudín, M. A., Heinrichs, A., Racapé, J., de Mendonça, R., Nienhaus, L., Le Moine, A., Roisin, S., Dodémont, M., Jacobs, F., Abramowicz, D., Johnston, B. D., Johnson, J. R. & Denis, O., Jan 1 2019, In : Nephrology Dialysis Transplantation. 34, 5, p. 878-885 8 p.

Research output: Contribution to journalArticle

2018

Draft genome sequences of five neonatal meningitis-causing Escherichia coli isolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

Xu, A., Johnson, J. R., Sheen, S. & Sommers, C., Apr 1 2018, In : Genome Announcements. 6, 16, e00091-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2016

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations
2020

Molecularly defined extraintestinal pathogenic Escherichia coli status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among E. coli ST131 isolates

Merino, I., Porter, S. B., Johnston, B., Clabots, C., Thuras, P., Ruiz-Garbajosa, P., Cantón, R. & Johnson, J. R., Jan 1 2020, In : Virulence. 11, 1, p. 327-336 10 p.

Research output: Contribution to journalArticle

Open Access
2017

Inactivation of transcriptional regulators during withinhousehold evolution of Escherichia coli

Kisiela, D. I., Radey, M., Paul, S., Porter, S., Polukhina, K., Tchesnokova, V., Shevchenko, S., Chan, D., Aziz, M., Johnson, T. J., Price, L. B., Johnson, J. R. & Sokurenko, E. V., Jul 1 2017, In : Journal of bacteriology. 199, 13, e00036-17.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
2016
Open Access
8 Scopus citations
2017

Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains

Stephens, C. M., Adams-Sapper, S., Sekhon, M., Johnson, J. R. & Riley, L. W., Mar 1 2017, In : mSphere. 2, 2, e00390-16.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
2013

Complete genome sequence of the epidemic and highly virulent CTX-M-15-producing H30-Rx subclone of Escherichia coli ST131

Andersen, P. S., Stegger, M., Aziz, M., Contente-Cuomo, T., Gibbons, H. S., Keim, P., Sokurenko, E. V., Johnson, J. R. & Price, L. B., 2013, In : Genome Announcements. 1, 6, e00988-13.

Research output: Contribution to journalArticle

32 Scopus citations
2011

Reduction of inappropriate urinary catheter use at a veterans affairs hospital through a multifaceted quality improvement project

Knoll, B. M., Wright, D., Ellingson, L., Kraemer, L., Patire, R., Kuskowski, M. A. & Johnson, J. R., Jun 1 2011, In : Clinical Infectious Diseases. 52, 11, p. 1283-1290 8 p.

Research output: Contribution to journalReview article

59 Scopus citations
2015
8 Scopus citations
2017

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Open Access
1 Scopus citations
2012

Escherichia coli isolates that carry vat, fyua, chua, and yfcv efficiently colonize the urinary tract

Spurbeck, R. R., Dinh, P. C., Walk, S. T., Stapleton, A. E., Hooton, T. M., Nolan, L. K., Kim, K. S., Johnson, J. R. & Mobley, H. L. T., 2012, In : Infection and immunity. 80, 12, p. 4115-4122 8 p.

Research output: Contribution to journalArticle

66 Scopus citations

Community-associated Escherichia coli harboring CTX-M β-lactamases from urine cultures from pediatric patients

Woods, K. L., Johnson, J. R., Padkowsky, S., Mariano, N., Colon-Urban, R., Hassanein, M., Wehbeh, W., Johnston, B. D., Clabots, C., Zahid, S. & Urban, C., Apr 1 2012, In : Antimicrobial agents and chemotherapy. 56, 4, p. 2209-2210 2 p.

Research output: Contribution to journalLetter

5 Scopus citations
2015

Intermingled Klebsiella pneumoniae Populations between Retail Meats and Human Urinary Tract Infections

Davis, G. S., Waits, K., Nordstrom, L., Weaver, B., Aziz, M., Gauld, L., Grande, H., Bigler, R., Horwinski, J., Porter, S., Stegger, M., Johnson, J. R., Liu, C. M. & Price, L. B., Jun 8 2015, In : Clinical Infectious Diseases. 61, 6, p. 892-899 8 p.

Research output: Contribution to journalArticle

47 Scopus citations

Colonization with Escherichia coli strains among female sex partners of men with febrile urinary tract infection

Ulleryd, P., Sandberg, T., Scheutz, F., Clabots, C., Johnston, B. D., Thuras, P. & Johnson, J. R., Jun 1 2015, In : Journal of clinical microbiology. 53, 6, p. 1947-1950 4 p.

Research output: Contribution to journalArticle

7 Scopus citations
2014

Sepsis from the gut: The enteric habitat of bacteria that cause late-onset neonatal bloodstream infections

Carl, M. A., Ndao, I. M., Springman, A. C., Manning, S. D., Johnson, J. R., Johnston, B. D., Burnham, C. A. D., Weinstock, E. S., Weinstock, G. M., Wylie, T. N., Mitreva, M., Abubucker, S., Zhou, Y., Stevens, H. J., Hall-Moore, C., Julian, S., Shaikh, N., Warner, B. B. & Tarr, P. I., 2014, In : Clinical Infectious Diseases. 58, 9, p. 1211-1218 8 p.

Research output: Contribution to journalArticle

80 Scopus citations
2012

Fluoroquinolone-resistant extraintestinal Escherichia coli clinical isolates representing the O15: K52: H1 clonal group from humans and dogs in Australia

Platell, J. L., Cobbold, R. N., Johnson, J. R., Clabots, C. R. & Trott, D. J., Jul 1 2012, In : Comparative Immunology, Microbiology and Infectious Diseases. 35, 4, p. 319-324 6 p.

Research output: Contribution to journalArticle

5 Scopus citations
2016
Open Access
9 Scopus citations
2017

Genomic analysis of multidrug-resistant Escherichia coli from North Carolina community hospitals: Ongoing circulation of CTX-M-producing ST131-H30Rx and ST131-H30R1 Strains

Kanamori, H., Parobek, C. M., Juliano, J. J., Johnson, J. R., Johnston, B. D., Johnson, T., Weber, D. J., Rutala, W. A. & Anderson, D. J., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00912.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations
2012

Comparison of Escherichia coli ST131 pulsotypes, by epidemiologic traits, 1967-2009

Johnson, J. R., Nicolas-Chanoine, M. H., Deb Roy, C., Castanheira, M., Robicsek, A., Hansen, G., Weissman, S., Urban, C., Platell, J., Trott, D., Zhanel, G., Clabots, C., Johnston, B. D. & Kuskowski, M. A., Apr 1 2012, In : Emerging infectious diseases. 18, 4, p. 598-607 10 p.

Research output: Contribution to journalArticle

80 Scopus citations
2015

Greater ciprofloxacin tolerance as a possible selectable phenotype underlying the pandemic spread of the H30 subclone of Escherichia coli sequence type 131

Johnson, J. R., Porter, S. B., Thuras, P., Johnson, T., Price, L. B., Tchesnokova, V. & Sokurenko, E. V., Nov 1 2015, In : Antimicrobial agents and chemotherapy. 59, 11, p. 7132-7135 4 p.

Research output: Contribution to journalArticle

6 Scopus citations
2014

Temporal trends in antimicrobial resistance and virulence-associated traits within the Escherichia coli sequence type 131 clonal group and its H30 and H30-Rx Subclones, 1968 to 2012

Olesen, B., Frimodt-Møller, J., Leihof, R. F., Struve, C., Johnston, B., Hansen, D. S., Scheutz, F., Krogfelt, K. A., Kuskowski, M. A., Clabots, C. & Johnson, J. R., Nov 1 2014, In : Antimicrobial agents and chemotherapy. 58, 11, p. 6886-6895 10 p.

Research output: Contribution to journalArticle

28 Scopus citations
2011

Commonality among fluoroquinolone-resistant sequence type ST131 extraintestinal Escherichia coli isolates from humans and companion animals in Australia

Platell, J. L., Cobbold, R. N., Johnson, J. R., Heisig, A., Heisig, P., Clabots, C., Kuskowski, M. A. & Trott, D. J., Aug 1 2011, In : Antimicrobial agents and chemotherapy. 55, 8, p. 3782-3787 6 p.

Research output: Contribution to journalArticle

82 Scopus citations
2018

Asymptomatic Bacteriuria

Johnson, J. R., May 17 2018, In : Clinical Infectious Diseases. 66, 11, p. 1816-1817 2 p.

Research output: Contribution to journalLetter

Open Access
2015

Extensive household outbreak of urinary tract infection and intestinal colonization due to extended-spectrum β-lactamase-producing Escherichia coli sequence type 131

Madigan, T., Johnson, J. R., Clabots, C., Johnston, B. D., Porter, S. B., Slater, B. S. & Banerjee, R., Jul 1 2015, In : Clinical Infectious Diseases. 61, 1, p. e5-e12

Research output: Contribution to journalArticle

20 Scopus citations

Zoonotic potential of Escherichia coli isolates from retail chicken meat products and eggs

Mitchell, N. M., Johnson, J. R., Johnston, B., Curtiss, R. & Mellata, M., Jan 1 2015, In : Applied and environmental microbiology. 81, 3, p. 1177-1187 11 p.

Research output: Contribution to journalArticle

58 Scopus citations
2013

The clonal distribution and diversity of extraintestinal Escherichia coli isolates vary according to patient characteristics

Banerjee, R., Johnston, B., Lohse, C., Chattopadhyay, S., Tchesnokova, V., Sokurenko, E. V. & Johnson, J. R., Dec 1 2013, In : Antimicrobial agents and chemotherapy. 57, 12, p. 5912-5917 6 p.

Research output: Contribution to journalArticle

58 Scopus citations
2018

Identification of biomarkers for differentiation of hypervirulent klebsiella pneumoniae from classical K. pneumoniae

Russo, T. A., Olson, R., Fang, C. T., Stoesser, N., Miller, M., MacDonald, U., Hutson, A., Barker, J. H., La Hoz, R. M., Johnson, J. R., Backer, M., Bajwa, R., Catanzaro, A. T., Crook, D., De Almeida, K., Fierer, J., Greenberg, D. E., Klevay, M., Patel, P., Ratner, A. & 2 others, Wang, J. T. & Zola, J., Sep 2018, In : Journal of clinical microbiology. 56, 9, e00776.

Research output: Contribution to journalArticle

Open Access
43 Scopus citations
2015

First detection of extended-spectrum cephalosporin- and fluoroquinolone-resistant Escherichia coli in Australian food-producing animals

Abraham, S., Jordan, D., Wong, H. S., Johnson, J. R., Toleman, M. A., Wakeham, D. L., Gordon, D. M., Turnidge, J. D., Mollinger, J. L., Gibson, J. S. & Trott, D. J., Dec 1 2015, In : Journal of Global Antimicrobial Resistance. 3, 4, p. 273-277 5 p.

Research output: Contribution to journalArticle

45 Scopus citations
2014
6 Scopus citations
2016

Escherichia coli: An old friend with new tidings

Vila, J., Sáez-López, E., Johnson, J. R., Römling, U., Dobrindt, U., Cantón, R., Giske, C. G., Naas, T., Carattoli, A., Martínez-Medina, M., Bosch, J., Retamar, P., Rodríguez-Banõ, J., Baquero, F. & Soto, S. M., Jul 1 2016, In : FEMS Microbiology Reviews. 40, 4, p. 437-463 27 p.

Research output: Contribution to journalReview article

Open Access
60 Scopus citations
2017

Rapid and specific detection of the Escherichia coli sequence type 648 complex within phylogroup F

Johnson, J. R., Johnston, B. D. & Gordon, D. M., Apr 2017, In : Journal of clinical microbiology. 55, 4, p. 1116-1121 6 p.

Research output: Contribution to journalArticle

Open Access
16 Scopus citations
2016

The Pandemic H30 Subclone of Escherichia coli Sequence Type 131 Is Associated with Persistent Infections and Adverse Outcomes Independent from Its Multidrug Resistance and Associations with Compromised Hosts

Johnson, J. R., Thuras, P., Johnston, B. D., Weissman, S. J., Limaye, A. P., Riddell, K., Scholes, D., Tchesnokova, V. & Sokurenko, E., Jun 15 2016, In : Clinical Infectious Diseases. 62, 12, p. 1529-1536 8 p.

Research output: Contribution to journalArticle

Open Access
21 Scopus citations
2015
33 Scopus citations
2012

High-resolution two-locus clonal typing of extraintestinal pathogenic Escherichia coli

Weissman, S. J., Johnson, J. R., Tchesnokova, V., Billig, M., Dykhuizen, D., Riddell, K., Rogers, P., Qin, X., Butler-Wu, S., Cookson, B. T., Fang, F. C., Scholes, D., Chattopadhyay, S. & Sokurenko, E., Mar 1 2012, In : Applied and environmental microbiology. 78, 5, p. 1353-1360 8 p.

Research output: Contribution to journalArticle

116 Scopus citations

Post-prostate biopsy infection with Escherichia coli ST131 leading to epididymo-orchitis and meningitis caused by gram-negative bacilli

Assimacopoulos, A., Johnston, B., Clabots, C. & Johnson, J. R., Dec 2012, In : Journal of clinical microbiology. 50, 12, p. 4157-4159 3 p.

Research output: Contribution to journalArticle

14 Scopus citations