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  • James R Johnson
2017
Open Access
7 Scopus citations
2019

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: A prospective study using whole-genome sequencing

Coussement, J., Argudín, M. A., Heinrichs, A., Racapé, J., de Mendonça, R., Nienhaus, L., Le Moine, A., Roisin, S., Dodémont, M., Jacobs, F., Abramowicz, D., Johnston, B. D., Johnson, J. R. & Denis, O., Jan 1 2019, In : Nephrology Dialysis Transplantation. 34, 5, p. 878-885 8 p.

Research output: Contribution to journalArticle

2018

Draft genome sequences of five neonatal meningitis-causing Escherichia coli isolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

Xu, A., Johnson, J. R., Sheen, S. & Sommers, C., Apr 1 2018, In : Genome Announcements. 6, 16, e00091-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations
2020

Molecularly defined extraintestinal pathogenic Escherichia coli status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among E. coli ST131 isolates

Merino, I., Porter, S. B., Johnston, B., Clabots, C., Thuras, P., Ruiz-Garbajosa, P., Cantón, R. & Johnson, J. R., Jan 1 2020, In : Virulence. 11, 1, p. 327-336 10 p.

Research output: Contribution to journalArticle

Open Access
2019
Open Access
2017

Inactivation of transcriptional regulators during withinhousehold evolution of Escherichia coli

Kisiela, D. I., Radey, M., Paul, S., Porter, S., Polukhina, K., Tchesnokova, V., Shevchenko, S., Chan, D., Aziz, M., Johnson, T. J., Price, L. B., Johnson, J. R. & Sokurenko, E. V., Jul 1 2017, In : Journal of bacteriology. 199, 13, e00036-17.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
2016
Open Access
8 Scopus citations
2020

Emergence of enteroaggregative escherichia coli within the ST131 lineage as a cause of extraintestinal infections

Boll, E. J., Overballe-Petersen, S., Hasman, H., Roer, L., Ng, K., Scheutz, F., Hammerum, A. M., Dungu, A., Hansen, F., Johannesen, T. B., Johnson, A., Nair, D. T., Lilje, B., Hansen, D. S., Krogfelt, K. A., Johnson, T. J., Price, L. B., Johnson, J. R., Struve, C., Olesen, B. & 1 others, Stegger, M., 2020, In : mBio. 11, 3, e00353-20.

Research output: Contribution to journalArticle

Open Access
2016

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2016, In : PloS one. 11, 1, e0147210.

Research output: Contribution to journalArticle

Open Access
61 Scopus citations
2017

Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains

Stephens, C. M., Adams-Sapper, S., Sekhon, M., Johnson, J. R. & Riley, L. W., Mar 1 2017, In : mSphere. 2, 2, e00390-16.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
2016

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations
2017

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Open Access
1 Scopus citations
2016

Escherichia coli: An old friend with new tidings

Vila, J., Sáez-López, E., Johnson, J. R., Römling, U., Dobrindt, U., Cantón, R., Giske, C. G., Naas, T., Carattoli, A., Martínez-Medina, M., Bosch, J., Retamar, P., Rodríguez-Banõ, J., Baquero, F. & Soto, S. M., Jul 1 2016, In : FEMS Microbiology Reviews. 40, 4, p. 437-463 27 p.

Research output: Contribution to journalReview article

Open Access
60 Scopus citations
2017

Genomic analysis of multidrug-resistant Escherichia coli from North Carolina community hospitals: Ongoing circulation of CTX-M-producing ST131-H30Rx and ST131-H30R1 Strains

Kanamori, H., Parobek, C. M., Juliano, J. J., Johnson, J. R., Johnston, B. D., Johnson, T., Weber, D. J., Rutala, W. A. & Anderson, D. J., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00912.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations
2018

Asymptomatic Bacteriuria

Johnson, J. R., May 17 2018, In : Clinical Infectious Diseases. 66, 11, p. 1816-1817 2 p.

Research output: Contribution to journalLetter

Open Access
2016

The Pandemic H30 Subclone of Escherichia coli Sequence Type 131 Is Associated with Persistent Infections and Adverse Outcomes Independent from Its Multidrug Resistance and Associations with Compromised Hosts

Johnson, J. R., Thuras, P., Johnston, B. D., Weissman, S. J., Limaye, A. P., Riddell, K., Scholes, D., Tchesnokova, V. & Sokurenko, E., Jun 15 2016, In : Clinical Infectious Diseases. 62, 12, p. 1529-1536 8 p.

Research output: Contribution to journalArticle

Open Access
21 Scopus citations
2018

Identification of biomarkers for differentiation of hypervirulent klebsiella pneumoniae from classical K. pneumoniae

Russo, T. A., Olson, R., Fang, C. T., Stoesser, N., Miller, M., MacDonald, U., Hutson, A., Barker, J. H., La Hoz, R. M., Johnson, J. R., Backer, M., Bajwa, R., Catanzaro, A. T., Crook, D., De Almeida, K., Fierer, J., Greenberg, D. E., Klevay, M., Patel, P., Ratner, A. & 2 others, Wang, J. T. & Zola, J., Sep 2018, In : Journal of clinical microbiology. 56, 9, e00776.

Research output: Contribution to journalArticle

Open Access
43 Scopus citations
2016
Open Access
9 Scopus citations
2017
Open Access
4 Scopus citations

Rapid and specific detection of the Escherichia coli sequence type 648 complex within phylogroup F

Johnson, J. R., Johnston, B. D. & Gordon, D. M., Apr 2017, In : Journal of clinical microbiology. 55, 4, p. 1116-1121 6 p.

Research output: Contribution to journalArticle

Open Access
16 Scopus citations
2018

Molecular Epidemiology of Extraintestinal Pathogenic Escherichia coli

Johnson, J. R. & Russo, T. A., Apr 1 2018, In : EcoSal Plus. 8, 1

Research output: Contribution to journalReview article

5 Scopus citations
2016

Prolonged colonisation with escherichia coli O25:ST131 versus other extended-spectrum beta-lactamase-producing E. coli in a long-term care facility with high endemic level of rectal colonisation, the Netherlands, 2013 to 2014

Overdevest, I., Haverkate, M., Veenemans, J., Hendriks, Y., Verhulst, C., Mulders, A., Couprie, W., Bootsma, M., Johnson, J. & Kluytmans, J., Oct 20 2016, In : Eurosurveillance. 21, 42

Research output: Contribution to journalArticle

Open Access
21 Scopus citations
2019

Thermal inactivation of extraintestinal pathogenic Escherichia coli suspended in ground chicken meat

Xu, A., Chuang, S., Scullen, O. J., Huang, L., Sheen, S., Sheen, L. Y., Johnson, J. R. & Sommers, C. H., Oct 2019, In : Food Control. 104, p. 269-277 9 p.

Research output: Contribution to journalArticle

2 Scopus citations
Open Access
2016

Ursodeoxycholic acid inhibits clostridium difficile spore germination and vegetative growth, and prevents the recurrence of ileal pouchitis associated with the infection

Weingarden, A. R., Chen, C., Zhang, N., Graiziger, C. T., Dosa, P. I., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Sadowsky, M. J. & Khoruts, A., Jan 1 2016, In : Journal of clinical gastroenterology. 50, 8, p. 624-630 7 p.

Research output: Contribution to journalArticle

Open Access
45 Scopus citations

Important Complexities of the Antivirulence Target Paradigm: A Novel Ostensibly Resistance-Avoiding Approach for Treating Infections

Russo, T. A., Spellberg, B. & Johnson, J. R., Mar 15 2016, In : Journal of Infectious Diseases. 213, 6, p. 901-903 3 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Separate F-type plasmids have shaped the evolution of the H30 subclone of Escherichia coli sequence type 131

Johnson, T. J., Danzeisen, J. L., Youmans, B., Case, K., Llop, K., Munoz-Aguayo, J., Flores-Figueroa, C., Aziz, M., Stoesser, N., Sokurenko, E., Price, L. B. & Johnson, J. R., Jul 1 2016, In : mSphere. 1, 4, e00121-16.

Research output: Contribution to journalArticle

Open Access
35 Scopus citations
2018

Draft genomic sequencing of six potential extraintestinal pathogenic Escherichia coli isolates from retail chicken meat

Xu, A., Johnson, J. R., Sheen, S., Needleman, D. S. & Sommers, C., May 1 2018, In : Genome Announcements. 6, 21, e00449-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2016
Open Access
5 Scopus citations
2018
Open Access
1 Scopus citations
2017

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Tchesnokova, V., Avagyan, H., Rechkina, E., Chan, D., Muradova, M., Haile, H. G., Radey, M., Weissman, S., Riddell, K., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Mar 2017, In : PloS one. 12, 3, e0174132.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations
Open Access
25 Scopus citations
2018

Alpha-toxin contributes to biofilm formation among Staphylococcus aureus wound isolates

Anderson, M. J., Schaaf, E., Breshears, L. M., Wallis, H. W., Johnson, J. R., Tkaczyk, C., Sellman, B. R., Sun, J. & Peterson, M. L., Apr 2018, In : Toxins. 10, 4, 157.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations
17 Scopus citations
2016

Escherichia coli sequence type 131 H30 is the main driver of emerging extended-spectrum-β-lactamase-producing E. coli at a tertiary care center

Johnson, J. R., Johnston, B., Thuras, P., Launer, B., Sokurenko, E. V. & Miller, L. G., Nov 1 2016, In : mSphere. 1, 6, e00314-16.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2018

Confusion and Bacteriuria in Long-Term Care Facility Residents

Johnson, J. R., Jun 2018, In : Journal of the American Geriatrics Society. 66, 6, 1 p.

Research output: Contribution to journalLetter

Open Access

Acute pyelonephritis in adults

Johnson, J. R. & Russo, T. A., Jan 4 2018, In : New England Journal of Medicine. 378, 1, p. 48-59 12 p.

Research output: Contribution to journalArticle

19 Scopus citations

Escherichia coli ST131-H22 as a foodborne uropathogen

Liu, C. M., Stegger, M., Aziz, M., Johnson, T. J., Waits, K., Nordstrom, L., Gauld, L., Weaver, B., Rolland, D., Statham, S., Horwinski, J., Sariya, S., Davis, G. S., Sokurenko, E., Keim, P., Johnson, J. R. & Price, L. B., Jul 1 2018, In : mBio. 9, 4, e00470-18.

Research output: Contribution to journalArticle

Open Access
32 Scopus citations
2017

Gram-negative bacterial infections: Research priorities, accomplishments, and future directions of the Antibacterial Resistance Leadership Group

Doi, Y., Bonomo, R. A., Hooper, D. C., Kaye, K. S., Johnson, J. R., Clancy, C. J., Thaden, J. T., Stryjewski, M. E. & Van Duin, D., Jan 1 2017, In : Clinical Infectious Diseases. 64, p. S30-S35

Research output: Contribution to journalArticle

Open Access
43 Scopus citations

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00732.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations
2018

Clinical and molecular correlates of Escherichia coli bloodstream infection from two geographically diverse centers in Rochester, Minnesota, and Singapore

Mendis, S. M., Vasoo, S., Johnston, B. D., Porter, S. B., Cunningham, S. A., Menon, S. R., Teng, C. B., De, P. P., Patel, R., Johnson, J. R. & Banerjee, R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00937.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2020
Open Access
1 Scopus citations
2017

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R., Apr 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Contribution to journalArticle

6 Scopus citations
2018

Prevalence and Molecular Characteristics of Clostridium difficile in Retail Meats, Food-Producing and Companion Animals, and Humans in Minnesota

Shaughnessy, M. K., Snider, T., Sepulveda, R., Boxrud, D., Cebelinski, E., Jawahir, S., Holzbauer, S., Johnston, B. D., Smith, K., Bender, J. B., Thuras, P., Diez-Gonzalez, F. & Johnson, J. R., Oct 1 2018, In : Journal of food protection. 81, 10, p. 1635-1642 8 p.

Research output: Contribution to journalArticle

2 Scopus citations
2019

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection

Marsh, K. J., Mundy, L., Holter, J. J. & Johnson, J. R., Dec 2019, In : Diagnostic Microbiology and Infectious Disease. 95, 4, 114874.

Research output: Contribution to journalArticle

1 Scopus citations
2016
Open Access
16 Scopus citations
2017
1 Scopus citations
2018

Identifying antibiotic- resistant infections

Drekonja, D. M. & Johnson, J. R., Jun 1 2018, In : Health Affairs. 37, 6, 1 p.

Research output: Contribution to journalLetter

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization

Kline, S. E., Sanstead, E. C., Johnson, J. R. & Kulasingam, S. L., Nov 1 2018, In : Infection Control and Hospital Epidemiology. 39, 11, p. 1340-1346 7 p.

Research output: Contribution to journalArticle

1 Scopus citations