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  • James R Johnson
2012

Rifapentine and isoniazid for latent tuberculosis [2]

Johnson, J. R., Apr 12 2012, In : New England Journal of Medicine. 366, 15, p. 1447-1448 2 p.

Research output: Contribution to journalLetter

2 Scopus citations
2017

Definitions of complicated urinary tract infection and pyelonephritis

Johnson, J. R., Jan 1 2017, In : Clinical Infectious Diseases. 64, 3, 1 p.

Research output: Contribution to journalLetter

Open Access
1 Scopus citations
2016
Open Access
9 Scopus citations
2013

Urinary tract infection in male veterans treatment patterns and outcomes

Drekonja, D. M., Rector, T. S., Cutting, A. & Johnson, J. R., Feb 18 2013, In : JAMA internal medicine. 173, 1, p. 62-68 7 p.

Research output: Contribution to journalArticle

71 Scopus citations
2017

Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains

Stephens, C. M., Adams-Sapper, S., Sekhon, M., Johnson, J. R. & Riley, L. W., Mar 1 2017, In : mSphere. 2, 2, e00390-16.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations
2015

Reservoirs of extraintestinal pathogenic Escherichia coli

Manges, A. R. & Johnson, J. R., Jan 1 2015, In : Microbiology Spectrum. 3, 5, UTI-0006-2012.

Research output: Contribution to journalArticle

22 Scopus citations
2016
Open Access
16 Scopus citations
2015

First detection of extended-spectrum cephalosporin- and fluoroquinolone-resistant Escherichia coli in Australian food-producing animals

Abraham, S., Jordan, D., Wong, H. S., Johnson, J. R., Toleman, M. A., Wakeham, D. L., Gordon, D. M., Turnidge, J. D., Mollinger, J. L., Gibson, J. S. & Trott, D. J., Dec 1 2015, In : Journal of Global Antimicrobial Resistance. 3, 4, p. 273-277 5 p.

Research output: Contribution to journalArticle

44 Scopus citations
2012
23 Scopus citations
74 Scopus citations

Prevalence of avian-pathogenic escherichia coli strain O1 Genomic islands among extraintestinal and commensal E. Coli isolates

Johnson, T. J., Wannemuehler, Y., Kariyawasam, S., Johnson, J. R., Logue, C. M. & Nolan, L. K., Jun 1 2012, In : Journal of bacteriology. 194, 11, p. 2846-2853 8 p.

Research output: Contribution to journalArticle

20 Scopus citations
2011

Systematic review of the literature on comparative effectiveness of antiviral treatments for chronic hepatitis B infection

Shamliyan, T. A., Johnson, J. R., MacDonald, R., Shaukat, A., Yuan, J. M., Kane, R. L. & Wilt, T. J., Mar 1 2011, In : Journal of general internal medicine. 26, 3, p. 326-339 14 p.

Research output: Contribution to journalArticle

11 Scopus citations
2013

A survey of resident physicians' knowledge regarding urine testing and subsequent antimicrobial treatment

Drekonja, D. M., Abbo, L. M., Kuskowski, M. A., Gnadt, C., Shukla, B. & Johnson, J. R., Oct 1 2013, In : American journal of infection control. 41, 10, p. 892-896 5 p.

Research output: Contribution to journalArticle

23 Scopus citations

Distribution of phylogenetic groups, sequence type ST131, and virulence-associated traits among Escherichia coli isolates from men with pyelonephritis or cystitis and healthy controls

Kudinha, T., Johnson, J. R., Andrew, S. D., Kong, F., Anderson, P. & Gilbert, G. L., Apr 2013, In : Clinical Microbiology and Infection. 19, 4, p. E173-E180

Research output: Contribution to journalArticle

32 Scopus citations
2018

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations
2011

Antimicrobial use and risk for recurrent clostridium difficile infection

Drekonja, D. M., Amundson, W. H., Decarolis, D. D., Kuskowski, M. A., Lederle, F. A. & Johnson, J. R., Nov 1 2011, In : American Journal of Medicine. 124, 11

Research output: Contribution to journalArticle

43 Scopus citations
2012

Rifapentine and isoniazid for latent tuberculosis [1]

Johnson, J. R., Apr 12 2012, In : New England Journal of Medicine. 366, 15, p. 1447-1448 2 p.

Research output: Contribution to journalLetter

1 Scopus citations
2013

Fluoroquinolone-resistant extraintestinal pathogenic Escherichia coli, including O25b-ST131, isolated from faeces of hospitalized dogs in an Australian veterinary referral centre

Guo, S. Y., Brouwers, H. J. M., Cobbold, R. N., Platell, J. L., Chapman, T. A., Barrs, V. R., Johnson, J. R. & Trott, D. J., May 1 2013, In : Journal of Antimicrobial Chemotherapy. 68, 5, p. 1025-1031 7 p., dks515.

Research output: Contribution to journalArticle

11 Scopus citations
2011

Extended-spectrum β-lactamase- producing escherichia coli in neonatal care unit

Johnson, J. R., Jun 1 2011, In : Emerging infectious diseases. 17, 6, p. 1153-1154 2 p.

Research output: Contribution to journalLetter

1 Scopus citations
2014
13 Scopus citations
2020

Emergence of enteroaggregative escherichia coli within the ST131 lineage as a cause of extraintestinal infections

Boll, E. J., Overballe-Petersen, S., Hasman, H., Roer, L., Ng, K., Scheutz, F., Hammerum, A. M., Dungu, A., Hansen, F., Johannesen, T. B., Johnson, A., Nair, D. T., Lilje, B., Hansen, D. S., Krogfelt, K. A., Johnson, T. J., Price, L. B., Johnson, J. R., Struve, C., Olesen, B. & 1 others, Stegger, M., Jan 1 2020, In : mBio. 11, 3, e00353-20.

Research output: Contribution to journalArticle

Open Access
2013

Extended-spectrum β-lactamase-producing escherichia coli from retail chicken meat and humans: Comparison of strains, plasmids, resistance genes, and virulence factors

Kluytmans, J. A. J. W., Overdevest, I. T. M. A., Willemsen, I., Kluytmans-Van Den Bergh, M. F. Q., Van Der Zwaluw, K., Heck, M., Rijnsburger, M., Vandenbroucke-Grauls, C. M. J. E., Savelkoul, P. H. M., Johnston, B. D., Gordon, D. & Johnson, J. R., Feb 15 2013, In : Clinical Infectious Diseases. 56, 4, p. 478-487 10 p.

Research output: Contribution to journalArticle

152 Scopus citations
82 Scopus citations
2014

Carbapenemase-producing bacteria in companion animals: A public health concern on the horizon

Abraham, S., Wong, H. S., Turnidge, J., Johnson, J. R. & Trott, D. J., May 2014, In : Journal of Antimicrobial Chemotherapy. 69, 5, p. 1155-1157 3 p., dkt518.

Research output: Contribution to journalArticle

40 Scopus citations
2019
Open Access
2017

Fine-scale structure analysis shows epidemic patterns of clonal complex 95, a cosmopolitan Escherichia coli lineage responsible for extraintestinal infection

Gordon, D. M., Geyik, S., Clermont, O., O'Brien, C. L., Huang, S., Abayasekara, C., Rajesh, A., Kennedy, K., Collignon, P., Pavli, P., Rodriguez, C., Johnston, B. D., Johnson, J. R., Decousser, J. W. & Denamur, E., May 1 2017, In : mSphere. 2, 3, e00168-17.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations
2016

Household clustering of escherichia coli sequence type 131 clinical and fecal isolates according to whole genome sequence analysis

Johnson, J. R., Davis, G., Clabots, C., Johnston, B. D., Porter, S., DebRoy, C., Pomputius, W., Ender, P. T., Cooperstock, M., Slater, B. S., Banerjee, R., Miller, S., Kisiela, D., Sokurenko, E. V., Aziz, M. & Price, L. B., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 3, ofw129.

Research output: Contribution to journalArticle

Open Access
19 Scopus citations

Escherichia coli: An old friend with new tidings

Vila, J., Sáez-López, E., Johnson, J. R., Römling, U., Dobrindt, U., Cantón, R., Giske, C. G., Naas, T., Carattoli, A., Martínez-Medina, M., Bosch, J., Retamar, P., Rodríguez-Banõ, J., Baquero, F. & Soto, S. M., Jul 1 2016, In : FEMS Microbiology Reviews. 40, 4, p. 437-463 27 p.

Research output: Contribution to journalReview article

Open Access
59 Scopus citations
2013

Predictive diagnostics for Escherichia coli infections based on the clonal association of antimicrobial resistance and clinical outcome

Tchesnokova, V., Billig, M., Chattopadhyay, S., Linardopoulou, E., Aprikian, P., Roberts, P. L., Skrivankova, V., Johnston, B., Gileva, A., Igusheva, I., Toland, A., Riddell, K., Rogers, P., Qin, X., Butler-Wu, S., Cookson, B. T., Fang, F. C., Kahl, B., Price, L. B., Weissman, S. J. & 4 others, Limaye, A., Scholes, D., Johnson, J. R. & Sokurenko, E. V., Sep 1 2013, In : Journal of clinical microbiology. 51, 9, p. 2991-2999 9 p.

Research output: Contribution to journalArticle

44 Scopus citations
2011

Rates of mutation and host transmission for an escherichia coli clone over 3 years

Reeves, P. R., Liu, B., Zhou, Z., Li, D., Guo, D., Ren, Y., Clabots, C., Lan, R., Johnson, J. R. & Wang, L., Nov 2 2011, In : PloS one. 6, 10, e26907.

Research output: Contribution to journalArticle

64 Scopus citations
2015

Colonization with Escherichia coli strains among female sex partners of men with febrile urinary tract infection

Ulleryd, P., Sandberg, T., Scheutz, F., Clabots, C., Johnston, B. D., Thuras, P. & Johnson, J. R., Jun 1 2015, In : Journal of clinical microbiology. 53, 6, p. 1947-1950 4 p.

Research output: Contribution to journalArticle

7 Scopus citations
2013

Clinical and molecular correlates of virulence in Escherichia coli causing bloodstream infection following transrectal ultrasound-guided (TRUS) prostate biopsy

Williamson, D. A., Freeman, J. T., Porter, S., Roberts, S., Wiles, S., Paterson, D. L. & Johnson, J. R., Dec 1 2013, In : Journal of Antimicrobial Chemotherapy. 68, 12, p. 2898-2906 9 p., dkt276.

Research output: Contribution to journalArticle

18 Scopus citations
2012

Multiplex PCR-based reverse line blot assay for simultaneous detection of 22 virulence genes in uropathogenic Escherichia coli

Kudinha, T., Kong, F., Johnson, J. R., Andrew, S. D., Anderson, P. & Gilbert, G. L., Feb 1 2012, In : Applied and environmental microbiology. 78, 4, p. 1198-1202 5 p.

Research output: Contribution to journalArticle

27 Scopus citations
2019

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection

Marsh, K. J., Mundy, L., Holter, J. J. & Johnson, J. R., Dec 2019, In : Diagnostic Microbiology and Infectious Disease. 95, 4, 114874.

Research output: Contribution to journalArticle

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation

Xu, A., Scullen, O. J., Sheen, S., Johnson, J. R. & Sommers, C. H., Dec 2019, In : Food Microbiology. 84, 103264.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
2015

Zoonotic potential of Escherichia coli isolates from retail chicken meat products and eggs

Mitchell, N. M., Johnson, J. R., Johnston, B., Curtiss, R. & Mellata, M., Jan 1 2015, In : Applied and environmental microbiology. 81, 3, p. 1177-1187 11 p.

Research output: Contribution to journalArticle

58 Scopus citations
2014

CTX-M-27- and CTX-M-14-producing, ciprofloxacin-resistant Escherichia coli of the H30 subclonal group within ST131 drive a Japanese regional ESBL epidemic

on behalf of the Kyoto-Shiga Clinical Microbiology Study Group, Nov 12 2014, In : Journal of Antimicrobial Chemotherapy. 70, 6, p. 1639-1649 11 p.

Research output: Contribution to journalArticle

56 Scopus citations
2016
Open Access
3 Scopus citations
2011

Do not abandon cultures

Johnson, J. R., Jun 27 2011, In : Archives of Internal Medicine. 171, 12, 1 p.

Research output: Contribution to journalLetter

2017
Open Access
7 Scopus citations

Gram-negative bacterial infections: Research priorities, accomplishments, and future directions of the Antibacterial Resistance Leadership Group

Doi, Y., Bonomo, R. A., Hooper, D. C., Kaye, K. S., Johnson, J. R., Clancy, C. J., Thaden, J. T., Stryjewski, M. E. & Van Duin, D., Jan 1 2017, In : Clinical Infectious Diseases. 64, p. S30-S35

Research output: Contribution to journalArticle

Open Access
42 Scopus citations
2012

Escherichia coli isolates that carry vat, fyua, chua, and yfcv efficiently colonize the urinary tract

Spurbeck, R. R., Dinh, P. C., Walk, S. T., Stapleton, A. E., Hooton, T. M., Nolan, L. K., Kim, K. S., Johnson, J. R. & Mobley, H. L. T., Dec 14 2012, In : Infection and immunity. 80, 12, p. 4115-4122 8 p.

Research output: Contribution to journalArticle

63 Scopus citations
2013

Predictors and molecular epidemiology of community-onset extended-spectrum β-lactamase-producing Escherichia coli infection in a Midwestern Community

Banerjee, R., Strahilevitz, J., Johnson, J. R., Nagwekar, P. P., Schora, D. M., Shevrin, I., Du, H., Peterson, L. R. & Robicsek, A., Sep 1 2013, In : Infection Control and Hospital Epidemiology. 34, 9, p. 947-953 7 p.

Research output: Contribution to journalArticle

38 Scopus citations
2016
Open Access
8 Scopus citations
2014

Temporal trends in antimicrobial resistance and virulence-associated traits within the Escherichia coli sequence type 131 clonal group and its H30 and H30-Rx Subclones, 1968 to 2012

Olesen, B., Frimodt-Møller, J., Leihof, R. F., Struve, C., Johnston, B., Hansen, D. S., Scheutz, F., Krogfelt, K. A., Kuskowski, M. A., Clabots, C. & Johnson, J. R., Nov 1 2014, In : Antimicrobial agents and chemotherapy. 58, 11, p. 6886-6895 10 p.

Research output: Contribution to journalArticle

26 Scopus citations
2019

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: A prospective study using whole-genome sequencing

Coussement, J., Argudín, M. A., Heinrichs, A., Racapé, J., de Mendonça, R., Nienhaus, L., Le Moine, A., Roisin, S., Dodémont, M., Jacobs, F., Abramowicz, D., Johnston, B. D., Johnson, J. R. & Denis, O., Jan 1 2019, In : Nephrology Dialysis Transplantation. 34, 5, p. 878-885 8 p.

Research output: Contribution to journalArticle

2018

Draft genome sequences of five neonatal meningitis-causing Escherichia coli isolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

Xu, A., Johnson, J. R., Sheen, S. & Sommers, C., Apr 1 2018, In : Genome Announcements. 6, 16, e00091-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2016

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations
2013

Preoperative urine cultures at a Veterans Affairs Medical Center

Drekonja, D. M., Zarmbinski, B. & Johnson, J. R., Feb 18 2013, In : JAMA internal medicine. 173, 1, p. 71-72 2 p.

Research output: Contribution to journalLetter

17 Scopus citations