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  • James R Johnson
2017

Genomic analysis of multidrug-resistant Escherichia coli from North Carolina community hospitals: Ongoing circulation of CTX-M-producing ST131-H30Rx and ST131-H30R1 Strains

Kanamori, H., Parobek, C. M., Juliano, J. J., Johnson, J. R., Johnston, B. D., Johnson, T., Weber, D. J., Rutala, W. A. & Anderson, D. J., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00912.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations
2016
Open Access
9 Scopus citations
Open Access
16 Scopus citations
2018

Confusion and Bacteriuria in Long-Term Care Facility Residents

Johnson, J. R., Jun 2018, In : Journal of the American Geriatrics Society. 66, 6, 1 p.

Research output: Contribution to journalLetter

Open Access
2017

Epidemic emergence in the United States of Escherichia coli sequence type 131-H30 (ST131-H30), 2000 to 2009

Johnson, J. R., Porter, S., Thuras, P. & Castanheira, M., Aug 2017, In : Antimicrobial agents and chemotherapy. 61, 8, e00732.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Definition of complicated urinary tract infection

Johnson, J. R., Feb 15 2017, In : Clinical Infectious Diseases. 64, 4, 1 p.

Research output: Contribution to journalLetter

Open Access
2 Scopus citations
2016

Escherichia coli sequence type 131 H30 is the main driver of emerging extended-spectrum-β-lactamase-producing E. coli at a tertiary care center

Johnson, J. R., Johnston, B., Thuras, P., Launer, B., Sokurenko, E. V. & Miller, L. G., Nov 1 2016, In : mSphere. 1, 6, e00314-16.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2020

Infectious Pneumorachis Due to Clostridium septicum

Wongboonsin, J., Duran, A. & Johnson, J. R., Jul 1 2020, In : Journal of general internal medicine. 35, 7, p. 2197-2198 2 p.

Research output: Contribution to journalComment/debate

2017

Rapid and specific detection of the Escherichia coli sequence type 648 complex within phylogroup F

Johnson, J. R., Johnston, B. D. & Gordon, D. M., Apr 2017, In : Journal of clinical microbiology. 55, 4, p. 1116-1121 6 p.

Research output: Contribution to journalArticle

Open Access
16 Scopus citations
2019

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation

Xu, A., Scullen, O. J., Sheen, S., Johnson, J. R. & Sommers, C. H., Dec 2019, In : Food Microbiology. 84, 103264.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
4 Scopus citations
2020

Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats

Kidsley, A. K., O'Dea, M., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Saputra, S., Jordan, D., Johnson, J. R., Gordon, D., Turni, C., Djordjevic, S. P., Abraham, S. & Trott, D. J., Jun 2020, In : Veterinary Microbiology. 245, 108685.

Research output: Contribution to journalArticle

2018

Asymptomatic Bacteriuria

Johnson, J. R., May 17 2018, In : Clinical Infectious Diseases. 66, 11, p. 1816-1817 2 p.

Research output: Contribution to journalLetter

Open Access

Contribution of yersiniabactin to the virulence of an Escherichia coli sequence type 69 (“clonal group A”) cystitis isolate in murine models of urinary tract infection and sepsis

Johnson, J. R., Magistro, G., Clabots, C., Porter, S., Manges, A., Thuras, P. & Schubert, S., Jul 2018, In : Microbial Pathogenesis. 120, p. 128-131 4 p.

Research output: Contribution to journalArticle

1 Scopus citations
2016

Separate F-type plasmids have shaped the evolution of the H30 subclone of Escherichia coli sequence type 131

Johnson, T. J., Danzeisen, J. L., Youmans, B., Case, K., Llop, K., Munoz-Aguayo, J., Flores-Figueroa, C., Aziz, M., Stoesser, N., Sokurenko, E., Price, L. B. & Johnson, J. R., Jul 1 2016, In : mSphere. 1, 4, e00121-16.

Research output: Contribution to journalArticle

Open Access
35 Scopus citations

The Pandemic H30 Subclone of Escherichia coli Sequence Type 131 Is Associated with Persistent Infections and Adverse Outcomes Independent from Its Multidrug Resistance and Associations with Compromised Hosts

Johnson, J. R., Thuras, P., Johnston, B. D., Weissman, S. J., Limaye, A. P., Riddell, K., Scholes, D., Tchesnokova, V. & Sokurenko, E., Jun 15 2016, In : Clinical Infectious Diseases. 62, 12, p. 1529-1536 8 p.

Research output: Contribution to journalArticle

Open Access
21 Scopus citations
2018

Alpha-toxin contributes to biofilm formation among Staphylococcus aureus wound isolates

Anderson, M. J., Schaaf, E., Breshears, L. M., Wallis, H. W., Johnson, J. R., Tkaczyk, C., Sellman, B. R., Sun, J. & Peterson, M. L., Apr 2018, In : Toxins. 10, 4, 157.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations
2019

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: A prospective study using whole-genome sequencing

Coussement, J., Argudín, M. A., Heinrichs, A., Racapé, J., de Mendonça, R., Nienhaus, L., Le Moine, A., Roisin, S., Dodémont, M., Jacobs, F., Abramowicz, D., Johnston, B. D., Johnson, J. R. & Denis, O., Jan 1 2019, In : Nephrology Dialysis Transplantation. 34, 5, p. 878-885 8 p.

Research output: Contribution to journalArticle

2020

Activity of imipenem-relebactam against carbapenem-resistant Escherichia coli isolates from the United States in relation to clonal background, resistance genes, coresistance, and region

Johnston, B. D., Thuras, P., Porter, S. B., Anacker, M., VonBank, B., Vagnone, P. S., Witwer, M., Castanheira, M. & Johnson, J. R., May 2020, In : Antimicrobial agents and chemotherapy. 64, 5, e02408-19.

Research output: Contribution to journalArticle

2018

Extensive genetic commonality among wildlife, wastewater, community, and nosocomial isolates of Escherichia coli sequence type 131 (H30R1 and H30Rx Subclones) That Carry blaCTX-M-27 or blaCTX-M-15

Jamborova, I., Johnston, B. D., Papousek, I., Kachlikova, K., Micenkova, L., Clabots, C., Skalova, A., Chudejova, K., Dolejska, M., Literak, I. & Johnson, J. R., Oct 2018, In : Antimicrobial agents and chemotherapy. 62, 10, e00519.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations
2019
Open Access
2017
Open Access
14 Scopus citations
1 Scopus citations
Open Access
4 Scopus citations
Open Access
25 Scopus citations

Inactivation of transcriptional regulators during withinhousehold evolution of Escherichia coli

Kisiela, D. I., Radey, M., Paul, S., Porter, S., Polukhina, K., Tchesnokova, V., Shevchenko, S., Chan, D., Aziz, M., Johnson, T. J., Price, L. B., Johnson, J. R. & Sokurenko, E. V., Jul 1 2017, In : Journal of bacteriology. 199, 13, e00036-17.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Virulence genes and subclone status as markers of experimental virulence in a murine sepsis model among Escherichia coli sequence type 131 clinical isolates from Spain

Merino, I., Porter, S. B., Johnston, B. D., Clabots, C., Shaw, E., Horcajada, J. P., Cantón, R., Ruiz-Garbajosa, P., Johnson, J. R. & ITUBRAS-GEIH group, Nov 2017, In : PloS one. 12, 11, e0188838.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2019

Rapid and Extensive Expansion in the United States of a New Multidrug-resistant Escherichia coli Clonal Group, Sequence Type 1193

Tchesnokova, V. L., Rechkina, E., Larson, L., Ferrier, K., Weaver, J. L., Schroeder, D. W., She, R., Butler-Wu, S. M., Aguero-Rosenfeld, M. E., Zerr, D., Fang, F. C., Ralston, J., Riddell, K., Scholes, D., Weissman, S., Parker, K., Spellberg, B., Johnson, J. R. & Sokurenko, E. V., Jan 7 2019, In : Clinical Infectious Diseases. 68, 2, p. 334-337 4 p.

Research output: Contribution to journalArticle

Open Access
19 Scopus citations
2018

Escherichia coli ST131-H22 as a foodborne uropathogen

Liu, C. M., Stegger, M., Aziz, M., Johnson, T. J., Waits, K., Nordstrom, L., Gauld, L., Weaver, B., Rolland, D., Statham, S., Horwinski, J., Sariya, S., Davis, G. S., Sokurenko, E., Keim, P., Johnson, J. R. & Price, L. B., Jul 1 2018, In : mBio. 9, 4, e00470-18.

Research output: Contribution to journalArticle

Open Access
32 Scopus citations
2017

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, A. R., Mende, K., Murray, C. K., Johnston, B. D., Sokurenko, E. V., Tchesnokova, V. & Johnson, J. R., Apr 1 2017, In : Diagnostic Microbiology and Infectious Disease. 87, 4, p. 382-385 4 p.

Research output: Contribution to journalArticle

6 Scopus citations
2019

Phylogenomic Analysis of Extraintestinal Pathogenic Escherichia coli Sequence Type 1193, an Emerging Multidrug-Resistant Clonal Group

Johnson, T., Elnekave, E., Miller, E. A., Munoz-Aguayo, J., Figueroa, C. F., Johnston, B. D., Nielson, D. W., Logue, C. M. & Johnson, J. R., Jan 2019, In : Antimicrobial agents and chemotherapy. 63, 1, e01913-18.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
2020
Open Access
1 Scopus citations
2016

Changes in colonic bile acid composition following fecal microbiota transplantation are sufficient to control Clostridium difficile germination and growth

Weingarden, A. R., Dosa, P. I., DeWinter, E., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Khoruts, A. & Sadowsky, M. J., Jan 1 2016, In : PloS one. 11, 1, e0147210.

Research output: Contribution to journalArticle

Open Access
61 Scopus citations
2018
17 Scopus citations
2016

A Novel 7-single nucleotide polymorphism-based clonotyping test allows rapid prediction of antimicrobial susceptibility of extraintestinal Escherichia coli directly from urine specimens

Tchesnokova, V., Avagyan, H., Billig, M., Chattopadhyay, S., Aprikian, P., Chan, D., Pseunova, J., Rechkina, E., Riddell, K., Scholes, D., Fang, F. C., Johnson, J. R. & Sokurenko, E. V., Jan 1 2016, In : Open Forum Infectious Diseases. 3, 1, ofw002.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Ursodeoxycholic acid inhibits clostridium difficile spore germination and vegetative growth, and prevents the recurrence of ileal pouchitis associated with the infection

Weingarden, A. R., Chen, C., Zhang, N., Graiziger, C. T., Dosa, P. I., Steer, C. J., Shaughnessy, M. K., Johnson, J. R., Sadowsky, M. J. & Khoruts, A., Jan 1 2016, In : Journal of clinical gastroenterology. 50, 8, p. 624-630 7 p.

Research output: Contribution to journalArticle

Open Access
45 Scopus citations
2017

Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains

Stephens, C. M., Adams-Sapper, S., Sekhon, M., Johnson, J. R. & Riley, L. W., Mar 1 2017, In : mSphere. 2, 2, e00390-16.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations
2018

Identifying antibiotic- resistant infections

Drekonja, D. M. & Johnson, J. R., Jun 1 2018, In : Health Affairs. 37, 6, 1 p.

Research output: Contribution to journalLetter

2019

Prevalence of asymptomatic bacteriuria among kidney transplant recipients beyond two months post-transplant: A multicenter, prospective, cross-sectional study

Coussement, J., Scemla, A., Hougardy, J. M., Sberro-Soussan, R., Amrouche, L., Catalano, C., Johnson, J. R. & Abramowicz, D., 2019, In : PloS one. 14, 9, e0221820.

Research output: Contribution to journalArticle

Open Access

Accessory traits and phylogenetic background predict Escherichia coli extraintestinal virulence better than does ecological source

Johnson, J. R., Johnston, B. D., Porter, S., Thuras, P., Aziz, M. & Price, L. B., Jan 1 2019, In : Journal of Infectious Diseases. 219, 1, p. 121-132 12 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2016

Important Complexities of the Antivirulence Target Paradigm: A Novel Ostensibly Resistance-Avoiding Approach for Treating Infections

Russo, T. A., Spellberg, B. & Johnson, J. R., Mar 15 2016, In : Journal of Infectious Diseases. 213, 6, p. 901-903 3 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
2018
3 Scopus citations
2017

Gram-negative bacterial infections: Research priorities, accomplishments, and future directions of the Antibacterial Resistance Leadership Group

Doi, Y., Bonomo, R. A., Hooper, D. C., Kaye, K. S., Johnson, J. R., Clancy, C. J., Thaden, J. T., Stryjewski, M. E. & Van Duin, D., Jan 1 2017, In : Clinical Infectious Diseases. 64, p. S30-S35

Research output: Contribution to journalArticle

Open Access
43 Scopus citations
2019

Rapid emergence, subsidence, and molecular detection of Escherichia coli sequence type 1193-fimH64, a new disseminated multidrug-resistant commensal and extraintestinal pathogen

Johnson, J. R., Johnston, B. D., Porter, S. B., Clabots, C., Bender, T. L., Thuras, P., Trott, D. J., Cobbold, R., Mollinger, J., Ferrieri, P., Drawz, S. & Banerjee, R., May 2019, In : Journal of clinical microbiology. 57, 5, e01664-18.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations
2018

Molecular Epidemiology of Extraintestinal Pathogenic Escherichia coli

Johnson, J. R. & Russo, T. A., Apr 1 2018, In : EcoSal Plus. 8, 1

Research output: Contribution to journalReview article

5 Scopus citations

Draft genome sequences of five neonatal meningitis-causing Escherichia coli isolates (SP-4, SP-5, SP-13, SP-46, and SP-65)

Xu, A., Johnson, J. R., Sheen, S. & Sommers, C., Apr 1 2018, In : Genome Announcements. 6, 16, e00091-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2020

Emergence of enteroaggregative escherichia coli within the ST131 lineage as a cause of extraintestinal infections

Boll, E. J., Overballe-Petersen, S., Hasman, H., Roer, L., Ng, K., Scheutz, F., Hammerum, A. M., Dungu, A., Hansen, F., Johannesen, T. B., Johnson, A., Nair, D. T., Lilje, B., Hansen, D. S., Krogfelt, K. A., Johnson, T. J., Price, L. B., Johnson, J. R., Struve, C., Olesen, B. & 1 others, Stegger, M., 2020, In : mBio. 11, 3, e00353-20.

Research output: Contribution to journalArticle

Open Access
2016
Open Access
5 Scopus citations

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

Modernizing Medical Microbiology Informatics Group (MMMIG), Mar 22 2016, In : mBio. 7, 2, e02162-15.

Research output: Contribution to journalArticle

Open Access
118 Scopus citations

Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia

Vangchhia, B., Abraham, S., Bell, J. M., Collignon, P., Gibson, J. S., Ingram, P. R., Johnson, J. R., Kennedy, K., Trott, D. J., Turnidge, J. D. & Gordon, D. M., Nov 2016, In : Microbiology (United Kingdom). 162, 11, p. 1904-1912 9 p., 000367.

Research output: Contribution to journalArticle

Open Access
18 Scopus citations