Find Research Outputs

2019

Chrysotile fibers in tissue adjacent to laryngeal squamous cell carcinoma in cases with a history of occupational asbestos exposure

Wronkiewicz, S. K., Roggli, V. L., Hinrichs, B. H., Kendler, A., Butler, R. A., Christensen, B. C., Marsit, C. J., Nelson, H. H., McClean, M. D., Kelsey, K. T. & Langevin, S. M., Jan 1 2019, In : Modern Pathology.

Research output: Contribution to journalArticle

Serpentine Asbestos
Asbestos
Occupational Exposure
Squamous Cell Carcinoma
Mineral Fibers

ChURP: A lightweight CLI framework to enable novice users to analyze sequencing datasets in parallel

Baller, J., Kono, T., Herman, A. C. & Zhang, Y., Jul 28 2019, Proceedings of the Practice and Experience in Advanced Research Computing: Rise of the Machines (Learning), PEARC 2019. Association for Computing Machinery, 3333156. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Processing
Gene expression
DNA
Servers
Costs

Cigarette smoking and cerebral blood flow in a cohort of middle-aged adults

Elbejjani, M., Auer, R., Dolui, S., Jacobs, D. R., Haight, T., Goff, D. C., Detre, J. A., Davatzikos, C., Bryan, R. N. & Launer, L. J., Jul 1 2019, In : Journal of Cerebral Blood Flow and Metabolism. 39, 7, p. 1247-1257 11 p.

Research output: Contribution to journalArticle

Cerebrovascular Circulation
Smoking
Occipital Lobe
Parietal Lobe
Putamen

Cigarette smoking and gray matter brain volumes in middle age adults: the CARDIA Brain MRI sub-study

Elbejjani, M., Auer, R., Jacobs Jr, D. R., Haight, T., Davatzikos, C., Goff, D. C., Bryan, R. N. & Launer, L. J., Dec 1 2019, In : Translational psychiatry. 9, 1, 78.

Research output: Contribution to journalArticle

Open Access
Smoking
Brain
Blood Vessels
Psychology
Alcohols

Circadian periodicity and effect of gender, age, diet and smoking on circulating plasma lipid peroxides and antioxidant enzymes in healthy Indians of different age groups

Singh, R., Mahdi, A. A., Singh, R. K., Otsuka, K., Lee Gierke, C. & Cornelissen-Guillaume, G. G., Jan 1 2019, (Accepted/In press) In : Biological Rhythm Research.

Research output: Contribution to journalArticle

circadian rhythm
Lipid Peroxides
smoking (food products)
Periodicity
Circadian Rhythm
2 Citations (Scopus)

Circadian regulation in tissue regeneration

Paatela, E., Munson, D. & Kikyo, N., May 1 2019, In : International journal of molecular sciences. 20, 9, 2263.

Research output: Contribution to journalArticle

Open Access
Tissue regeneration
Complex networks
regeneration
Clocks
Regeneration

Circuit-equivalent models for current-controlled inverters

Johnson, B., Lu, M., Purba, V. & Dhople, S., Jun 1 2019, 2019 IEEE 20th Workshop on Control and Modeling for Power Electronics, COMPEL 2019. Institute of Electrical and Electronics Engineers Inc., 8769670. (2019 IEEE 20th Workshop on Control and Modeling for Power Electronics, COMPEL 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Equivalent Circuit
Equivalent circuits
Controller
Controllers
Electric current control

Circulating ceruloplasmin, ceruloplasmin-associated genes and the incidence of venous thromboembolism in the Atherosclerosis Risk in Communities study

Arenas de Larriva, A. P., Alonso, A., Norby, F., Roetker, N. S. & Folsom, A. R., May 1 2019, In : Journal of Thrombosis and Haemostasis. 17, 5, p. 818-826 9 p.

Research output: Contribution to journalArticle

Ceruloplasmin
Venous Thromboembolism
Atherosclerosis
Incidence
Genes
Nicotine
Smoking
Recurrence
Gonadal Steroid Hormones
Neurobiology

Circulating tumor biomarkers in meningiomas reveal a signature of equilibrium between tumor growth and immune modulation

Erkan, E. P., Ströbel, T., Dorfer, C., Sonntagbauer, M., Weinhäusel, A., Saydam, N. & Saydam, O., Sep 1 2019, In : Frontiers in Oncology. 9, SEP, 1031.

Research output: Contribution to journalArticle

Open Access
Meningioma
Tumor Biomarkers
Growth
Neoplasms
Blood Proteins
3 Citations (Scopus)

Circulating tumor DNA alterations in patients with metastatic castration-resistant prostate cancer

Sonpavde, G., Agarwal, N., Pond, G. R., Nagy, R. J., Nussenzveig, R. H., Hahn, A. W., Sartor, O., Gourdin, T. S., Nandagopal, L., Ledet, E. M., Naik, G., Armstrong, A. J., Wang, J., Bilen, M. A., Gupta, S., Grivas, P., Pal, S. K., Lanman, R. B., Talasaz, A. A. & Lilly, M. B., May 1 2019, In : Cancer. 125, 9, p. 1459-1469 11 p.

Research output: Contribution to journalArticle

Castration
Androgen Receptors
Prostatic Neoplasms
DNA
Survival
2 Citations (Scopus)

Circulation of Plasmids Harboring Resistance Genes to Quinolones and/or Extended-Spectrum Cephalosporins in Multiple Salmonella enterica Serotypes from Swine in the United States

Elnekave, E., Hong, S. L., Lim, S., Hayer, S. S., Boxrud, D., Taylor, A. J., Lappi, V., Noyes, N., Johnson, T., Rovira, A., Davies, P. R., Perez, A. M. & Alvareza, J., Apr 1 2019, In : Antimicrobial agents and chemotherapy. 63, 4, e02602-18.

Research output: Contribution to journalArticle

Salmonella enterica
Quinolones
Cephalosporins
Plasmids
Swine
2 Citations (Scopus)
Research
Volunteers
Open Access
NF-kappa B
Androgen Receptors
Prostatic Neoplasms
Maintenance
Prostate

Clairvoyant networks

Jin, C., Lumezanu, C., Zhang, Z-L. & Chen, H., Jun 1 2019, TMA 2019 - Proceedings of the 3rd Network Traffic Measurement and Analysis Conference. Secci, S., Chrisment, I., Fiore, M., Tabourier, L. & Lim, K-W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 89-96 8 p. 8784643. (TMA 2019 - Proceedings of the 3rd Network Traffic Measurement and Analysis Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visibility
Switches
Monitoring
Testbeds
Magnets
3 Citations (Scopus)

Clamp looseness detection using modal strain estimated from FBG based operational modal analysis

Wang, Z., Liu, M., Zhu, Z., Qu, Y., Wei, Q., Zhou, Z., Tan, Y., Yu, Z. & Yang, F., Apr 1 2019, In : Measurement: Journal of the International Measurement Confederation. 137, p. 82-97 16 p.

Research output: Contribution to journalArticle

SMS
clamps
Modal Analysis
Clamping devices
Fiber Grating

Clarifying how hunt-specific experiences affect satisfaction among more avid and less avid waterfowl hunters

Schroeder, S., Fulton, D. C., Cornicelli, L., Cordts, S. D. & Lawrence, J. S., Sep 1 2019, In : Wildlife Society Bulletin. 43, 3, p. 455-467 13 p.

Research output: Contribution to journalArticle

waterfowl
hunting
marketing
outdoor recreation
wildlife management
4 Citations (Scopus)

Classification scheme for ductal morphology in cyanotic patients with ductal dependent pulmonary blood flow and association with outcomes of patent ductus arteriosus stenting

Qureshi, A. M., Goldstein, B. H., Glatz, A. C., Agrawal, H., Aggarwal, V., Ligon, R. A., McCracken, C., McDonnell, A., Buckey, T. M., Whiteside, W., Metcalf, C. M. & Petit, C. J., Apr 1 2019, In : Catheterization and Cardiovascular Interventions. 93, 5, p. 933-943 11 p.

Research output: Contribution to journalArticle

Patent Ductus Arteriosus
Pulmonary Artery
Lung
Stents

Classification with high dimensional features

Zou, H., Jan 1 2019, In : Wiley Interdisciplinary Reviews: Computational Statistics. 11, 1, e1453.

Research output: Contribution to journalReview article

High-dimensional
Classifier
Statistical Learning
Regularization Technique
Interpretability

Classifying Adolescent Major Depressive Disorder using Linear SVM with Anatomical Features from Diffusion Weighted Imaging

Chu, S. H., Lenglet, C., Schreiner, M. W., Klimes-Dougan, B., Cullen, K. R. & Parhi, K. K., Feb 19 2019, Conference Record of the 52nd Asilomar Conference on Signals, Systems and Computers, ACSSC 2018. Matthews, M. B. (ed.). IEEE Computer Society, p. 1197-1201 5 p. 8645542. (Conference Record - Asilomar Conference on Signals, Systems and Computers; vol. 2018-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brain
Classifiers
Imaging techniques
Diffusion tensor imaging
Statistical tests

Classifying cold-stress responses of inbred maize seedlings using RGB imaging

Enders, T., St. Dennis, S., Oakland, J., Callen, S. T., Gehan, M. A., Miller, N. D., Spalding, E. P., Springer, N. M. & Hirsch, C. D., Jan 1 2019, In : Plant Direct. 3, 1, e00104.

Research output: Contribution to journalArticle

Open Access
Cold-Shock Response
Seedlings
Zea mays
genotype
cold stress

Classifying heterogeneous sequential data by cyclic domain adaptation: An application in land cover detection

Jia, X., Nayak, G., Khandelwal, A., Karpatne, A. & Kumar, V., Jan 1 2019, SIAM International Conference on Data Mining, SDM 2019. Society for Industrial and Applied Mathematics Publications, p. 540-548 9 p. (SIAM International Conference on Data Mining, SDM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Remote sensing
Monitoring
Processing
10 Citations (Scopus)

Class II transactivator (CIITA) mediates IFN-γ induced eNOS repression by enlisting SUV39H1

Weng, X., Zhang, Y., Li, Z., Yu, L., Xu, F., Fang, M., Hou, L., Ge, J. & Xu, Y., Feb 1 2019, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1862, 2, p. 163-172 10 p.

Research output: Contribution to journalArticle

Nitric Oxide Synthase Type III
Endothelial cells
Endothelial Cells
Transcription
MHC class II transactivator protein

Classroom management for ethnic-racial minority students: A meta-analysis of single-case design studies

Long, A. C. J., Miller, F. G. & Upright, J. J., Jan 1 2019, In : School Psychology Quarterly. 34, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Meta-Analysis
minority
Students
classroom
management
1 Citation (Scopus)

Climate and lawn management interact to control C4 plant distribution in residential lawns across seven U.S. cities

Trammell, T. L. E., Pataki, D. E., Still, C. J., Ehleringer, J. R., Avolio, M. L., Bettez, N., Cavender-Bares, J. M., Groffman, P. M., Grove, M., Hall, S. J., Heffernan, J., Hobbie, S. E., Larson, K. L., Morse, J. L., Neill, C., Nelson, K. C., O'Neil-Dunne, J., Pearse, W. D., Chowdhury, R. R., Steele, M. & 1 others, Wheeler, M. M., Jun 1 2019, In : Ecological Applications. 29, 4, e01884.

Research output: Contribution to journalArticle

C4 plant
climate
growing season
temperature
grass

Climate change adaptation in natural world heritage sites: A triage approach

Perry, J., Sep 1 2019, In : Climate. 7, 9, 105.

Research output: Contribution to journalArticle

Open Access
World Heritage Site
climate change
accountability
transparency
stakeholder
1 Citation (Scopus)

Climate change has likely already affected global food production

Ray, D., West, P. C., Clark, M., Gerber, J. S., Prishchepov, A. V. & Chatterjee, S. B., May 1 2019, In : PloS one. 14, 5, e0217148.

Research output: Contribution to journalArticle

Open Access
Climate Change
food production
Climate change
Crops
Elaeis guineensis

Climate change is predicted to disrupt patterns of local adaptation in wild and cultivated maize

Aguirre-Liguori, J. A., Ramírez-Barahona, S., Tiffin, P. L. & Eguiarte, L. E., Jul 10 2019, In : Proceedings of the Royal Society B: Biological Sciences. 286, 1906

Research output: Contribution to journalArticle

Climate Change
local adaptation
Climate change
Zea mays
maize
1 Citation (Scopus)

Climate–fire–vegetation interactions and the rise of novel landscape patterns in subalpine ecosystems, Colorado

Calder, W. J., Stefanova, V. & Shuman, B., Jul 1 2019, In : Journal of Ecology. 107, 4, p. 1689-1703 15 p.

Research output: Contribution to journalArticle

ecosystems
ecosystem
wildfires
wildfire
climate change
5 Citations (Scopus)

Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

GFBI consortium, May 16 2019, In : Nature. 569, 7756, p. 404-408 5 p.

Research output: Contribution to journalLetter

Symbiosis
Climate
Ecosystem
Soil
Plant Dispersal

Climatic controls on peatland black spruce growth in relation to water table variation and precipitation

Dymond, S. F., D'Amato, A. W., Kolka, R. K., Bolstad, P. V., Sebestyen, S. D., Gill, K. & Curzon, M. T., Oct 1 2019, In : Ecohydrology. 12, 7, e2137.

Research output: Contribution to journalArticle

Picea mariana
peatlands
peatland
water table
temperature
5 Citations (Scopus)

Climatic synchrony and increased outbreaks in allopatric populations of an invasive defoliator

Ward, S. F. & Aukema, B. H., Mar 15 2019, In : Biological Invasions. 21, 3, p. 685-691 7 p.

Research output: Contribution to journalArticle

Coleophora laricella
allopatry
synchrony
Larix occidentalis
defoliation
8 Citations (Scopus)

Clinical and biological predictors of response to standardised paediatric colitis therapy (PROTECT): a multicentre inception cohort study

Hyams, J. S., Davis Thomas, S., Gotman, N., Haberman, Y., Karns, R., Schirmer, M., Mo, A., Mack, D. R., Boyle, B., Griffiths, A. M., LeLeiko, N. S., Sauer, C. G., Keljo, D. J., Markowitz, J., Baker, S. S., Rosh, J., Baldassano, R. N., Patel, A., Pfefferkorn, M., Otley, A. & 30 others, Heyman, M., Noe, J., Oliva-Hemker, M., Rufo, P. A., Strople, J., Ziring, D., Guthery, S. L., Sudel, B., Benkov, K., Wali, P., Moulton, D., Evans, J., Kappelman, M. D., Marquis, M. A., Sylvester, F. A., Collins, M. H., Venkateswaran, S., Dubinsky, M., Tangpricha, V., Spada, K. L., Saul, B., Wang, J., Serrano, J., Hommel, K., Marigorta, U. M., Gibson, G., Xavier, R. J., Kugathasan, S., Walters, T. & Denson, L. A., Apr 27 2019, In : The Lancet. 393, 10182, p. 1708-1720 13 p.

Research output: Contribution to journalArticle

Colitis
Cohort Studies
Pediatrics
Mesalamine
Adrenal Cortex Hormones

Clinical and microbiologic investigation of an expedited peri-implantitis dog model: An animal study

Seong, W-J., Kotsakis, G., Huh, J. K., Jeong, S. C., Nam, K. Y., Kim, J. R., Heo, Y. C., Kim, H. C., Zhang, L., Evans, M. D., Conrad, H. J. & Schumacher, R. J., Jul 15 2019, In : BMC Oral Health. 19, 1, 150.

Research output: Contribution to journalArticle

Open Access
Peri-Implantitis
Animal Models
Dogs
Ligation
Bone and Bones

Clinical Characteristics and Survival of Patients with Malignant Ovarian Tumors in Addis Ababa, Ethiopia

Piszczan, S., Desalegn, D., Petros, H., Gurmu, M., Kroeber, E. S., Addissie, A., Mikolajczyk, R., Ghebre, R. G., Mathewos, A., Thomssen, C., Jemal, A. & Kantelhardt, E. J., Jun 1 2019, In : Oncologist. 24, 6, p. e303-e311

Research output: Contribution to journalArticle

Ethiopia
Ovarian Neoplasms
Survival
Confidence Intervals
Drug Therapy
4 Citations (Scopus)

Clinical Considerations Regarding the Use of Obesity Pharmacotherapy in Adolescents with Obesity

Srivastava, G., Fox, C. K., Kelly, A. S., Jastreboff, A. M., Browne, A. F., Browne, N. T., Pratt, J. S. A., Bolling, C., Michalsky, M. P., Cook, S., Lenders, C. M. & Apovian, C. M., Feb 1 2019, In : Obesity. 27, 2, p. 190-204 15 p.

Research output: Contribution to journalReview article

Pediatric Obesity
Obesity
Drug Therapy
Life Style
Bariatric Surgery

Clinical course in chronic subdural hematoma patients aged 18–49 compared to patients 50 years and above: A multicenter study and meta-analysis

Bartek, J., Sjåvik, K., Dhawan, S., Sagberg, L. M., Kristiansson, H., Ståhl, F., Förander, P., Chen, C. C. & Jakola, A. S., Jan 1 2019, In : Frontiers in Neurology. 10, APR, 311.

Research output: Contribution to journalArticle

Open Access
Hematoma, Subdural, Chronic
Multicenter Studies
Meta-Analysis
Recurrence
Headache
Right Ventricular Dysfunction
Pulmonary Hypertension
Lung Diseases
Heart Ventricles
Chronic Disease
1 Citation (Scopus)

Clinical development of therapeutic agents for hospitalized patients with influenza: Challenges and innovations

King, J. C., Beigel, J. H., Ison, M. G., Rothman, R. E., Uyeki, T. M., Walker, R. E., Neaton, J., Tegeris, J. S., Zhou, J. A., Armstrong, K. L., Carter, W., Miele, P. S., Willis, M. S., Dugas, A. F., Tracy, L. R. A., Vock, D. M. & Bright, R. A., Apr 1 2019, In : Open Forum Infectious Diseases. 6, 4

Research output: Contribution to journalArticle

Open Access
Proxy
Human Influenza
Triage
Therapeutics
Hospital Emergency Service
2 Citations (Scopus)

Clinical Features Associated with Survival Outcome in African-American Patients with Hepatocellular Carcinoma

Estevez, J., Yang, J. D., Leong, J., Nguyen, P., Giama, N. H., Zhang, N., Ali, H. A., Lee, M. H., Cheung, R., Roberts, L., Schwartz, M. & Nguyen, M. H., Jan 1 2019, In : American Journal of Gastroenterology. 114, 1, p. 80-88 9 p.

Research output: Contribution to journalArticle

African Americans
Hepatocellular Carcinoma
Survival
Liver Neoplasms
Mortality
5 Citations (Scopus)

Clinical Features of Neutrophilic Dermatosis Variants Resembling Necrotizing Fasciitis

Sanchez, I. M., Lowenstein, S., Johnson, K. A., Babik, J., Haag, C., Keller, J. J., Ortega-Loayza, A. G., Cohen, J., McCalmont, T. H., Demer, A., Mansh, M. D., Hylwa, S. A., Liu, J. & Shinkai, K., Jan 1 2019, In : JAMA Dermatology. 155, 1, p. 79-84 6 p.

Research output: Contribution to journalArticle

Necrotizing Fasciitis
Skin Diseases
Sweet Syndrome
Pyoderma Gangrenosum
Diagnostic Errors

Clinical implications of age-related change of the mandibular plane angle

Hardin, A. M., Valiathan, M., Oh, H., Knigge, R. P., McNulty, K. P., Leary, E. V., Duren, D. L. & Sherwood, R. J., Jan 1 2019, (Accepted/In press) In : Orthodontics and Craniofacial Research.

Research output: Contribution to journalArticle

Growth
Sex Factors
Analysis of Variance
1 Citation (Scopus)
Manuscripts
Orthopedics
Joints
Bone and Bones
Research
Open Access
Manuscripts
Orthopedics
Joints
Bone and Bones
Research
5 Citations (Scopus)

Clinical Pharmacogenetics Implementation Consortium Guideline for Cytochrome P450 (CYP)2D6 Genotype and Atomoxetine Therapy

Brown, J. T., Bishop, J. R., Sangkuhl, K., Nurmi, E. L., Mueller, D. J., Dinh, JC., Gaedigk, A., Klein, T. E., Caudle, K. E., McCracken, J. T., de Leon, J. & Leeder, J. S., Jul 1 2019, In : Clinical pharmacology and therapeutics. 106, 1, p. 94-102 9 p.

Research output: Contribution to journalReview article

Cytochrome P-450 CYP2D6
Pharmacogenetics
Genotype
Guidelines
Attention Deficit Disorder with Hyperactivity

Clinical practice and outcomes of palliative radiation therapy in pediatric oncology patients: An international comparison of experiences from two distinct countries and health care systems

Rao, A. D., Figueiredo, M. L. S., Yegya-Raman, N., Sehgal, S., Chen, Q., Alcorn, S. R., Chen, M. J., Ladra, M., Villar, R. & Terezakis, S. A., Nov 1 2019, In : Radiotherapy and Oncology. 140, p. 1-5 5 p.

Research output: Contribution to journalArticle

Palliative Care
Radiotherapy
Pediatrics
Delivery of Health Care
Brazil
15 Citations (Scopus)

Clinical Practice Guideline: Tonsillectomy in Children (Update)

Mitchell, R. B., Archer, S. M., Ishman, S. L., Rosenfeld, R. M., Coles, S., Finestone, S. A., Friedman, N. R., Giordano, T., Hildrew, D. M., Kim, T., Lloyd, R. M., Parikh, S. R., Shulman, S. T., Walner, D. L., Walsh, S. A. & Nnacheta, L. C., Feb 1 2019, In : Otolaryngology - Head and Neck Surgery (United States). 160, 1_suppl, p. S1-S42

Research output: Contribution to journalArticle

Tonsillectomy
Practice Guidelines
Polysomnography
Sleep Apnea Syndromes
Guidelines
2 Citations (Scopus)

Clinical Practice Guideline: Tonsillectomy in Children (Update)—Executive Summary

Mitchell, R. B., Archer, S. M., Ishman, S. L., Rosenfeld, R. M., Coles, S., Finestone, S. A., Friedman, N. R., Giordano, T., Hildrew, D. M., Kim, T., Lloyd, R. M., Parikh, S. R., Shulman, S. T., Walner, D. L., Walsh, S. A. & Nnacheta, L. C., Feb 1 2019, In : Otolaryngology - Head and Neck Surgery (United States). 160, 2, p. 187-205 19 p.

Research output: Contribution to journalArticle

Tonsillectomy
Practice Guidelines
Guidelines
Polysomnography
Sleep Apnea Syndromes
3 Citations (Scopus)

Clinical Practice Guideline for Emergency Department Procedural Sedation With Propofol: 2018 Update

Miller, K. A., Andolfatto, G., Miner, J. R., Burton, J. H. & Krauss, B. S., May 1 2019, In : Annals of Emergency Medicine. 73, 5, p. 470-480 11 p.

Research output: Contribution to journalArticle

Propofol
Practice Guidelines
Hospital Emergency Service
Evidence-Based Practice
Pediatrics
1 Citation (Scopus)

Clinical presentation, diagnosis, and management of fetal alcohol spectrum disorder

Wozniak, J. R., Riley, E. P. & Charness, M. E., Aug 1 2019, In : The Lancet Neurology. 18, 8, p. 760-770 11 p.

Research output: Contribution to journalReview article

Fetal Alcohol Spectrum Disorders
Motor Skills
Executive Function
Cognitive Therapy
North America