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Personal profile

Research interests

I have a broad background in bioinformatics researchers. The focus of my graduate thesis is the application of comparative genomics and data mining methods to understand the regulatory sequences in mammalian genomes. After graduation, I have worked at MSI with an emphasis on projects using next-generation sequencing technologies. I have analyzed RNA-Seq, DNA-Seq, and ChIP-Seq data to profile gene expression, identify genomic variants and discover non-coding regulatory elements.

Research interests

  • next-generation sequencing
  • bioinformatics

Fingerprint The Fingerprint is created by mining the titles and abstracts of the person's research outputs and projects/funding awards to create an index of weighted terms from discipline-specific thesauri.

Anti-plane Shear Mathematics
Energy Function Mathematics
Viral RNA Medicine & Life Sciences
RNA Viruses Medicine & Life Sciences
Genes Medicine & Life Sciences
Metagenome Medicine & Life Sciences
Elastic Tubes Mathematics
Genome Medicine & Life Sciences

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Research Output 1993 2018

  • 11 Article
  • 1 Conference contribution
5 Citations (Scopus)

Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: implications to maltose excretion by a green alga

Arriola, M. B., Natarajan, V., Zhang, Y., Plunkett, M. H., Hondzo, H. & Barney, B. M., Feb 1 2018, In : Plant Journal. 93, 3, p. 566-586 21 p.

Research output: Contribution to journalArticle

Micractinium
Chlorella sorokiniana
Chlorella
Chlorophyta
Maltose
2 Citations (Scopus)

Mechanism of fibrosis in HNF1B-related autosomal dominant tubulointerstitial kidney disease

Chan, S. C., Zhang, Y., Shao, A., Avdulov, S. V., Herrera, J., Aboudehen, K., Pontoglio, M. & Igarashi, P., Oct 1 2018, In : Journal of the American Society of Nephrology. 29, 10, p. 2493-2509 17 p.

Research output: Contribution to journalArticle

Open Access
Kidney Diseases
Fibrosis
Kidney
Epithelial Cells
Transcription Factors
2 Citations (Scopus)

A platform for computationally advanced collaborative agroinformatics data discovery and analysis

Gustafson, A., Erdmann, J., Milligan, M., Onsongo, G., Pardey, P., Prather, T., Silverstein, K., Wilgenbusch, J. & Zhang, Y., Jul 9 2017, PEARC 2017 - Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact. Association for Computing Machinery, a2. (ACM International Conference Proceeding Series; vol. Part F128771).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data transfer
Authentication
Crops
Pipelines
Productivity
45 Citations (Scopus)

CFTR is a tumor suppressor gene in murine and human intestinal cancer

Than, B. L. N., Linnekamp, J. F., Starr, T., Largaespada, D. A., Rod, A., Zhang, Y., Bruner, V., Abrahante - Llorens, J. E., Schumann, A., Luczak, T., Niemczyk, A., O'Sullivan, G., Medema, J. P., Fijneman, R. J. A., Meijer, G. A., Van Den Broek, E., Hodges, C. A., Scott, P. M., Vermeulen, L. & Cormier, R. T., Aug 11 2016, In : Oncogene. 35, 32, p. 4191-4199 9 p.

Research output: Contribution to journalArticle

Intestinal Neoplasms
Tumor Suppressor Genes
Colon
Organoids
Genes
4 Citations (Scopus)

Development of the intestinal RNA virus community of healthy broiler chickens

Shah, J. D., Desai, P. T., Zhang, Y., Scharber, S. K., Baller, J. A., Xing, Z. & Cardona, C. J., Feb 1 2016, In : PloS one. 11, 2, e0150094.

Research output: Contribution to journalArticle

RNA Viruses
Viral RNA
Viruses
Chickens
broiler chickens