Projects per year
Personal profile
Research interests
I have a broad background in bioinformatics researchers. The focus of my graduate thesis is the application of comparative genomics and data mining methods to understand the regulatory sequences in mammalian genomes. After graduation, I have worked at MSI with an emphasis on projects using next-generation sequencing technologies. I have analyzed RNA-Seq, DNA-Seq, and ChIP-Seq data to profile gene expression, identify genomic variants and discover non-coding regulatory elements.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Research Interest Keywords
- next-generation sequencing
- bioinformatics
Fingerprint
The Fingerprint is created by mining the titles and abstracts of the person's research outputs and projects/funding awards to create an index of weighted terms from discipline-specific thesauri.
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Collaborations and top research areas from the last five years
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Projects
- 1 Finished
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Molecular mechanisms and consequences of Purkinje cell vulnerability in SCA1
NATIONAL ATAXIA FOUNDATION, INC.
3/1/22 → 2/28/23
Project: Research project
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CK2 alpha prime and alpha-synuclein pathogenic functional interaction mediates synaptic dysregulation in huntington’s disease
Yu, D., Zarate, N. L., White, A., Coates, D., Tsai, W., Perez de Nanclares Fernandez, C., Cuccu, F., Yue, J. S., Brown, T. G., Mansky, R. H., Jiang, K., Kim, H., Nichols-Meade, T., Larson, S. N., Gundry, K., Zhang, Y., Tomas-Zapico, C., Lucas, J. J., Benneyworth, M. A., Öz, G., & 3 others, Dec 2022, In: Acta Neuropathologica Communications. 10, 1, 83.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Role of nutrient-driven O-GlcNAc-post-translational modification in pancreatic exocrine and endocrine islet development
Baumann, D., Wong, A., Akhaphong, B., Jo, S., Pritchard, S., Mohan, R., Chung, G., Zhang, Y. & Alejandro, E. U., Apr 2020, In: Development (Cambridge). 147, 7, 186643.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum
Olarte, R., Menke, J. R., Zhang, Y., Sullivan, S., Slot, J. C., Huang, Y., Badalamenti, J., Quandt, A. C., Spatafora, J. W. & Bushley, K. E., Feb 7 2019, In: BMC Genomics. 20, 1, 120.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
ChURP: A lightweight CLI framework to enable novice users to analyze sequencing datasets in parallel
Baller, J., Kono, T., Herman, A. & Zhang, Y., Jul 28 2019, Proceedings of the Practice and Experience in Advanced Research Computing: Rise of the Machines (Learning), PEARC 2019. Association for Computing Machinery, 3333156. (ACM International Conference Proceeding Series).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
12 Scopus citations -
Complete genome sequence of hospital-acquired methicillin-resistant staphylococcus aureus strain WCUH29
Lei, T., Zhang, Y., Yang, J., Silverstein, K. & Ji, Y., Jun 6 2019, In: Microbiology Resource Announcements. 8, 23, e0055119.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations