Research Output per year
Personal profile
Research interests
I have a broad background in bioinformatics researchers. The focus of my graduate thesis is the application of comparative genomics and data mining methods to understand the regulatory sequences in mammalian genomes. After graduation, I have worked at MSI with an emphasis on projects using next-generation sequencing technologies. I have analyzed RNA-Seq, DNA-Seq, and ChIP-Seq data to profile gene expression, identify genomic variants and discover non-coding regulatory elements.
Research interests
- next-generation sequencing
- bioinformatics
Fingerprint The Fingerprint is created by mining the titles and abstracts of the person's research outputs and projects/funding awards to create an index of weighted terms from discipline-specific thesauri.
Genome
Medicine & Life Sciences
Anti-plane Shear
Mathematics
Energy Function
Mathematics
Viral RNA
Medicine & Life Sciences
Genes
Medicine & Life Sciences
RNA Viruses
Medicine & Life Sciences
Transcriptome
Medicine & Life Sciences
Hepatocyte Nuclear Factor 1
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Research Output 1993 2019
ChURP: A lightweight CLI framework to enable novice users to analyze sequencing datasets in parallel
Baller, J., Kono, T., Herman, A. & Zhang, Y., Jul 28 2019, Proceedings of the Practice and Experience in Advanced Research Computing: Rise of the Machines (Learning), PEARC 2019. Association for Computing Machinery, 3333156. (ACM International Conference Proceeding Series).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Processing
Gene expression
DNA
Servers
Costs
Complete genome sequence of hospital-acquired methicillin-resistant staphylococcus aureus strain WCUH29
Lei, T., Zhang, Y., Yang, J., Silverstein, K. & Ji, Y., Jun 6 2019, In : Microbiology Resource Announcements. 8, 23, e0055119.Research output: Contribution to journal › Article
Open Access
Methicillin-Resistant Staphylococcus aureus
Genome
Virulence
Hepatocyte nuclear factor-1β regulates Wnt signaling through genome-wide competition with β-catenin/ lymphoid enhancer binding factor
Chan, S. C., Zhang, Y., Pontoglio, M. & Igarashi, P., Nov 26 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 48, p. 24133-24142 10 p.Research output: Contribution to journal › Article
Hepatocyte Nuclear Factor 1
TCF Transcription Factors
Catenins
Genome
Kidney
2
Citations
(Scopus)
Immunomodulation with Human Umbilical Cord Blood Stem Cells Ameliorates Ischemic Brain Injury – A Brain Transcriptome Profiling Analysis
Shiao, M. L., Yuan, C., Crane, A. T., Voth, J. P., Juliano, M., Stone, L. L. H., Nan, Z., Zhang, Y., Kuzmin-Nichols, N., Sanberg, P. R., Grande, A. W. & Low, W. C., Jul 1 2019, In : Cell transplantation. 28, 7, p. 864-873 10 p.Research output: Contribution to journal › Article
Open Access
Immunomodulation
Gene Expression Profiling
Stem cells
Fetal Blood
Brain Injuries
Long-term tolerance of islet allografts in nonhuman primates induced by apoptotic donor leukocytes
Singh, A., Ramachandran, S., Graham, M. L., Daneshmandi, S., Heller, D., Suarez-Pinzon, W. L., Balamurugan, A. N., Ansite, J. D., Wilhelm, J. J., Yang, A., Zhang, Y., Palani, N. P., Abrahante, J. E., Burlak, C., Miller, S. D., Luo, X. & Hering, B. J., Dec 1 2019, In : Nature communications. 10, 1, 3495.Research output: Contribution to journal › Article
Open Access
primates
Transplantation Tolerance
leukocytes
Primates
Allografts