Research Output per year
Personal profile
Research interests
I have a broad background in bioinformatics researchers. The focus of my graduate thesis is the application of comparative genomics and data mining methods to understand the regulatory sequences in mammalian genomes. After graduation, I have worked at MSI with an emphasis on projects using next-generation sequencing technologies. I have analyzed RNA-Seq, DNA-Seq, and ChIP-Seq data to profile gene expression, identify genomic variants and discover non-coding regulatory elements.
Research interests
- next-generation sequencing
- bioinformatics
Fingerprint The Fingerprint is created by mining the titles and abstracts of the person's research outputs and projects/funding awards to create an index of weighted terms from discipline-specific thesauri.
Anti-plane Shear
Mathematics
Energy Function
Mathematics
Viral RNA
Medicine & Life Sciences
RNA Viruses
Medicine & Life Sciences
Genes
Medicine & Life Sciences
Metagenome
Medicine & Life Sciences
Elastic Tubes
Mathematics
Genome
Medicine & Life Sciences
Network
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Research Output 1993 2018
5
Citations
(Scopus)
Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: implications to maltose excretion by a green alga
Arriola, M. B., Natarajan, V., Zhang, Y., Plunkett, M. H., Hondzo, H. & Barney, B. M., Feb 1 2018, In : Plant Journal. 93, 3, p. 566-586 21 p.Research output: Contribution to journal › Article
Micractinium
Chlorella sorokiniana
Chlorella
Chlorophyta
Maltose
2
Citations
(Scopus)
Mechanism of fibrosis in HNF1B-related autosomal dominant tubulointerstitial kidney disease
Chan, S. C., Zhang, Y., Shao, A., Avdulov, S. V., Herrera, J., Aboudehen, K., Pontoglio, M. & Igarashi, P., Oct 1 2018, In : Journal of the American Society of Nephrology. 29, 10, p. 2493-2509 17 p.Research output: Contribution to journal › Article
Open Access
Kidney Diseases
Fibrosis
Kidney
Epithelial Cells
Transcription Factors
2
Citations
(Scopus)
A platform for computationally advanced collaborative agroinformatics data discovery and analysis
Gustafson, A., Erdmann, J., Milligan, M., Onsongo, G., Pardey, P., Prather, T., Silverstein, K., Wilgenbusch, J. & Zhang, Y., Jul 9 2017, PEARC 2017 - Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact. Association for Computing Machinery, a2. (ACM International Conference Proceeding Series; vol. Part F128771).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Data transfer
Authentication
Crops
Pipelines
Productivity
45
Citations
(Scopus)
CFTR is a tumor suppressor gene in murine and human intestinal cancer
Than, B. L. N., Linnekamp, J. F., Starr, T., Largaespada, D. A., Rod, A., Zhang, Y., Bruner, V., Abrahante - Llorens, J. E., Schumann, A., Luczak, T., Niemczyk, A., O'Sullivan, G., Medema, J. P., Fijneman, R. J. A., Meijer, G. A., Van Den Broek, E., Hodges, C. A., Scott, P. M., Vermeulen, L. & Cormier, R. T., Aug 11 2016, In : Oncogene. 35, 32, p. 4191-4199 9 p.Research output: Contribution to journal › Article
Intestinal Neoplasms
Tumor Suppressor Genes
Colon
Organoids
Genes
4
Citations
(Scopus)
Development of the intestinal RNA virus community of healthy broiler chickens
Shah, J. D., Desai, P. T., Zhang, Y., Scharber, S. K., Baller, J. A., Xing, Z. & Cardona, C. J., Feb 1 2016, In : PloS one. 11, 2, e0150094.Research output: Contribution to journal › Article
RNA Viruses
Viral RNA
Viruses
Chickens
broiler chickens