1989 …2021

Research output per year

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Research Output

2019

A large-scale genome-wide association study in U.S. Holstein cattle

Jiang, J., Ma, L., Prakapenka, D., VanRaden, P. M., Cole, J. B. & Da, Y., Jan 1 2019, In : Frontiers in Genetics. 10, MAY, 412.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Functional annotation and Bayesian fine-mapping reveals candidate genes for important agronomic traits in Holstein bulls

Jiang, J., Cole, J. B., Freebern, E., Da, Y., VanRaden, P. M. & Ma, L., Dec 1 2019, In : Communications biology. 2, 1, 212.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Genome changes due to artificial selection in U.S. Holstein cattle

Ma, L., Sonstegard, T. S., Cole, J. B., Vantassell, C. P., Wiggans, G. R., Crooker, B. A., Tan, C., Prakapenka, D., Liu, G. E. & Da, Y., Feb 11 2019, In : BMC Genomics. 20, 1, 128.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Symposium review: Genetics, genome-wide association study, and genetic improvement of dairy fertility traits

Ma, L., Cole, J. B., Da, Y. & VanRaden, P. M., Apr 2019, In : Journal of Dairy Science. 102, 4, p. 3735-3743 9 p.

Research output: Contribution to journalArticle

7 Scopus citations
2017

Genome-wide association study and accuracy of genomic prediction for teat number in Duroc pigs using genotyping-by-sequencing

Tan, C., Wu, Z., Ren, J., Huang, Z., Liu, D., He, X., Prakapenka, D., Zhang, R., Li, N., Da, Y. & Hu, X., Mar 29 2017, In : Genetics Selection Evolution. 49, 1, 35.

Research output: Contribution to journalArticle

5 Scopus citations
2016

Genetic composition of captive panda population

Yang, J., Shen, F., Hou, R. & Da, Y., Oct 3 2016, In : BMC genetics. 17, 1, 133.

Research output: Contribution to journalArticle

Genomic inbreeding and relatedness in wild panda populations

Garbe, J. R., Prakapenka, D., Tan, C. & Da, Y., Aug 2016, In : PloS one. 11, 8, e0160496.

Research output: Contribution to journalArticle

7 Scopus citations
2015

Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis

Ma, L., O'Connell, J. R., VanRaden, P. M., Shen, B., Padhi, A., Sun, C., Bickhart, D. M., Cole, J. B., Null, D. J., Liu, G. E., Da, Y. & Wiggans, G. R., Nov 2015, In : PLoS genetics. 11, 11, e1005387.

Research output: Contribution to journalArticle

74 Scopus citations
9 Scopus citations
2014

A cis-Regulatory Mutation of PDSS2 Causes Silky-Feather in Chickens

Feng, C., Gao, Y., Dorshorst, B., Song, C., Gu, X., Li, Q., Li, J., Liu, T., Rubin, C. J., Zhao, Y., Wang, Y., Fei, J., Li, H., Chen, K., Qu, H., Shu, D., Ashwell, C., Da, Y., Andersson, L., Hu, X. & 1 others, Li, N., Aug 28 2014, In : PLoS genetics. 10, 8, e1004576.

Research output: Contribution to journalArticle

14 Scopus citations
5 Scopus citations

GVCBLUP: A computer package for genomic prediction and variance component estimation of additive and dominance effects

Wang, C., Prakapenka, D., Wang, S., Pulugurta, S., Runesha, H. B. & Da, Y., Aug 9 2014, In : BMC bioinformatics. 15, 1, 270.

Research output: Contribution to journalArticle

16 Scopus citations

Mixed model methods for genomic prediction and variance component estimation of additive and dominance effects using SNP markers

Da, Y., Wang, C., Wang, S. & Hu, G., Jan 30 2014, In : PloS one. 9, 1, e87666.

Research output: Contribution to journalArticle

47 Scopus citations

Quantitative genetics model as the

Wang, C. & Da, Y., Dec 17 2014, In : PLoS One. 9, 12, p. e114484 e114484.

Research output: Contribution to journalArticle

12 Scopus citations
2013

Effect of artificial selection on runs of homozygosity in U.S. Holstein cattle

Kim, E. S., Cole, J. B., Huson, H., Wiggans, G. R., Van Tassel, C. P., Crooker, B. A., Liu, G., Da, Y. & Sonstegard, T. S., Nov 14 2013, In : PloS one. 8, 11, e80813.

Research output: Contribution to journalArticle

77 Scopus citations
2012

A genome-wide scan of selective sweeps in two broiler chicken lines divergently selected for abdominal fat content

Zhang, H., Wang, S. Z., Wang, Z. P., Da, Y., Wang, N., Hu, X. X., Zhang, Y. D., Wang, Y. X., Leng, L., Tang, Z. Q. & Li, H., Dec 15 2012, In : BMC Genomics. 13, 1, 704.

Research output: Contribution to journalArticle

29 Scopus citations

Effect of sample stratification on dairy GWAS results

Ma, L., Wiggans, G. R., Wang, S., Sonstegard, T. S., Yang, J., Crooker, B. A., Cole, J. B., Van Tassell, C. P., Lawlor, T. J. & Da, Y., Oct 6 2012, In : BMC Genomics. 13, 1, 536.

Research output: Contribution to journalArticle

25 Scopus citations

Genome-wide association study identified a narrow chromosome 1 region associated with chicken growth traits

Xie, L., Luo, C., Zhang, C., Zhang, R., Tang, J., Nie, Q., Ma, L., Hu, X., Li, N., Da, Y. & Zhang, X., Feb 16 2012, In : PloS one. 7, 2, e30910.

Research output: Contribution to journalArticle

64 Scopus citations

Selection signature analysis implicates the PC1/PCSK1 region for chicken abdominal fat content

Zhang, H., Hu, X., Wang, Z., Zhang, Y., Wang, S., Wang, N., Ma, L., Leng, L., Wang, S., Wang, Q., Wang, Y., Tang, Z., Li, N., Da, Y. & Li, H., Jul 11 2012, In : PloS one. 7, 7, e40736.

Research output: Contribution to journalArticle

25 Scopus citations

SNPEVG: A graphical tool for GWAS graphing with mouse clicks

Wang, S., Dvorkin, D. & Da, Y., Nov 30 2012, In : BMC bioinformatics. 13, 1, 319.

Research output: Contribution to journalArticle

40 Scopus citations
2011

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

Cole, J. B., Wiggans, G. R., Ma, L., Sonstegard, T. S., Lawlor, T. J., Crooker, B. A., Van Tassell, C. P., Yang, J., Wang, S., Matukumalli, L. K. & Da, Y., Aug 11 2011, In : BMC Genomics. 12, 408.

Research output: Contribution to journalArticle

185 Scopus citations

Genome-wide association study of body weight in chicken F2 resource population

Gu, X., Feng, C., Ma, L., Song, C., Wang, Y., Da, Y., Li, H., Chen, K., Ye, S., Ge, C., Hu, X. & Li, N., Jul 19 2011, In : PloS one. 6, 7, e21872.

Research output: Contribution to journalArticle

84 Scopus citations
2010

Genome-wide association analysis of total cholesterol and high-density lipoprotein cholesterol levels using the Framingham Heart Study data

Ma, L., Yang, J., Runesha, H. B., Tanaka, T., Ferrucci, L., Bandinelli, S. & Da, Y., Apr 6 2010, In : BMC medical genetics. 11, 1, 55.

Research output: Contribution to journalArticle

58 Scopus citations

Identification of quantitative trait loci for shank length and growth at different development stages in chicken

Gao, Y., Du, Z. Q., Feng, C. G., Deng, X. M., Li, N., Da, Y. & Hu, X. X., Feb 1 2010, In : Animal Genetics. 41, 1, p. 101-104 4 p.

Research output: Contribution to journalArticle

10 Scopus citations

Multi-locus test conditional on confirmed effects leads to increased power in genome-wide association studies

Ma, L., Han, S., Yang, J. & Da, Y., Dec 3 2010, In : PloS one. 5, 11, e15006.

Research output: Contribution to journalArticle

11 Scopus citations
2009

Role of selection and inbreeding on the incidence of cutaneous malignant melanoma in Sinclair swine

Gomez-Raya, L., Amoss, M. S., Da, Y., Beattie, C. W., Ash, O. & Rauw, W. M., Jun 1 2009, In : Journal of Animal Breeding and Genetics. 126, 3, p. 242-249 8 p.

Research output: Contribution to journalArticle

6 Scopus citations

The value of avian genomics to the conservation of wildlife

Romanov, M. N., Tuttle, E. M., Houck, M. L., Modi, W. S., Chemnick, L. G., Korody, M. L., Mork, E. M. S., Otten, C. A., Renner, T., Jones, K. C., Dandekar, S., Papp, J. C., Da, Y., Green, E. D., Magrini, V., Hickenbotham, M. T., Glasscock, J., McGrath, S., Mardis, E. R. & Ryder, O. A., Jul 14 2009, In : BMC Genomics. 10, SUPPL. 2, S10.

Research output: Contribution to journalArticle

62 Scopus citations
2008
68 Scopus citations
2006

A genome scan for quantitative trait loci associated with body weight at different developmental stages in chickens

Gao, Y., Hu, X. X., Du, Z. Q., Deng, X. M., Huang, Y. H., Fei, J., Feng, J. D., Liu, Z. L., Da, Y. & Li, N., Jun 1 2006, In : Animal Genetics. 37, 3, p. 276-278 3 p.

Research output: Contribution to journalArticle

17 Scopus citations

Detection of SNP epistasis effects of quantitative traits using an extended Kempthorne model

Mao, Y., London, N. R., Ma, L., Dvorkin, D. & Da, Y., Dec 13 2006, In : Physiological genomics. 28, 1, p. 46-52 7 p.

Research output: Contribution to journalArticle

40 Scopus citations

Single nucleotide polymorphisms in the chicken Lmbr1 gene are associated with chicken polydactyly

Huang, Y. Q., Deng, X. M., Du, Z. Q., Qiu, X., Du, X., Chen, W., Morisson, M., Leroux, S., Ponce de Léon, F. A., Da, Y. & Li, N., Jun 7 2006, In : Gene. 374, 1-2, p. 10-18 9 p.

Research output: Contribution to journalArticle

13 Scopus citations
2005
6 Scopus citations

Statistical power for detecting epistasis QTL effects under the F-2 design

Mao, Y. & Da, Y., Mar 1 2005, In : Genetics Selection Evolution. 37, 2, p. 129-150 22 p.

Research output: Contribution to journalArticle

7 Scopus citations
2004

Detection of quantitative trait loci affecting milk production, health, and reproductive traits in Holstein cattle

Ashwell, M. S., Heyen, D. W., Sonstegard, T. S., Van Tassell, C. P., Da, Y., VanRaden, P. M., Ron, M., Weller, J. I. & Lewin, H. A., Feb 2004, In : Journal of Dairy Science. 87, 2, p. 468-475 8 p.

Research output: Contribution to journalArticle

183 Scopus citations
2003

Allelic variation and genetic linkage of avian microsatellites in a new turkey population for genetic mapping

Reed, K. M., Chaves, L. D., Garbe, J. R., Da, Y. & Harry, D. E., Dec 1 2003, In : Cytogenetic and Genome Research. 102, 1-4, p. 331-339 9 p.

Research output: Contribution to journalArticle

27 Scopus citations

A software tool for the graphical visualization of large and complex populations.

Garbe, J. R. & Da, Y., Dec 2003, In : Yi chuan xue bao = Acta genetica Sinica. 30, 12, p. 1193-1195 3 p.

Research output: Contribution to journalArticle

4 Scopus citations

Clinical Characteristics and Inheritance of Idiopathic Epilepsy in Vizslas

Patterson, N., Mickelson, J. R., Da, Y., Roberts, M. C., Mc Vey, A. S., O'Brien, D. P., Johnson, G. S. & Armstrong, P. J., May 1 2003, In : Journal of veterinary internal medicine. 17, 3, p. 319-325 7 p.

Research output: Contribution to journalArticle

62 Scopus citations

Linkage analysis for mapping genes of sex-influenced traits

London, N. R., Garbe, J. R., Schmutz, S. M., Abrahamsen, M. S. & Da, Y., Apr 1 2003, In : Mammalian Genome. 14, 4, p. 261-267 7 p.

Research output: Contribution to journalArticle

Statistical analysis and experimental design for mapping genes of complex traits in domestic animals.

Da, Y., Dec 2003, In : Yi chuan xue bao = Acta genetica Sinica. 30, 12, p. 1183-1192 10 p.

Research output: Contribution to journalReview article

2 Scopus citations
2002

Linkage analysis using direct and indirect counting and relative efficiencies for codominant and dominant loci

Da, Y., Garbe, J., London, N. & Xu, J., Oct 1 2002, In : Journal of animal science. 80, 10, p. 2528-2539 12 p.

Research output: Contribution to journalArticle

3 Scopus citations
2001

Generation and exploration of a dense genetic map in a region of a QTL affecting corpora lutea in a Meishan x Yorkshire cross

Braunschweig, M. H., Paszek, A. A., Weller, J. I., Da, Y., Hawken, R. J., Wheeler, M. B., Schook, L. B. & Alexander, L. J., Sep 11 2001, In : Mammalian Genome. 12, 9, p. 719-723 5 p.

Research output: Contribution to journalArticle

13 Scopus citations
2000

Detection and parameter estimation for quantitative trait loci using regression models and multiple markers

Da, Y., VanRaden, P. M. & Schook, L. B., Sep 26 2000, In : Genetics Selection Evolution. 32, 4, p. 357-381 25 p.

Research output: Contribution to journalArticle

10 Scopus citations
1999

A genome scan for QTL influencing milk production and health traits in dairy cattle.

Heyen, D. W., Weller, J. I., Ron, M., Band, M., Beever, J. E., Feldmesser, E., Da, Y., Wiggans, G. R., VanRaden, P. M. & Lewin, H. A., Nov 11 1999, In : Physiological Genomics. 1, 3, p. 165-175 11 p.

Research output: Contribution to journalArticle

178 Scopus citations

Standardization and conversion of marker polymorphism measures

Da, Y., VanRaden, P. M., Ron, M., Beever, J. E., Paszek, A. A., Song, J., Wiggans, G. R., Ma, R., Weller, J. I. & Lewin, H. A., Jan 1 1999, In : Animal Biotechnology. 10, 1-2, p. 25-35 11 p.

Research output: Contribution to journalArticle

3 Scopus citations
1998

Designs of reference families for the construction of genetic linkage maps

Da, Y., VanRaden, P. M., Li, N., Beattie, C. W., Wu, C. & Schook, L. B., Jan 1 1998, In : Animal Biotechnology. 9, 3, p. 205-228 24 p.

Research output: Contribution to journalArticle

Detection of Putative Loci Affecting Conformational Type Traits in an Elite Population of United States Holsteins Using Microsatellite Markers

Ashwell, M. S., Da, Y., Vanraden, P. M., Rexroad, C. E. & Miller, R. H., Apr 1998, In : Journal of Dairy Science. 81, 4, p. 1120-1125 6 p.

Research output: Contribution to journalArticle

43 Scopus citations

Detection of Putative Loci Affecting Milk Production and Composition, Health, and Type Traits in a United States Holstein Population

Ashwell, M. S., Da, Y., Van Tassell, C. P., Vanraden, P. M., Miller, R. H. & Rexroad, C. E., Dec 1998, In : Journal of Dairy Science. 81, 12, p. 3309-3314 6 p.

Research output: Contribution to journalArticle

36 Scopus citations

Reduced bovine leukaemia virus proviral load in genetically resistant cattle

Mirsky, M. L., Olmstead, C., Da, Y. & Lewin, H. A., Aug 1 1998, In : Animal Genetics. 29, 4, p. 245-252 8 p.

Research output: Contribution to journalArticle

42 Scopus citations
1997

Detection of loci affecting milk production and health traits in an elite US Holstein population using microsatellite markers

Ashwell, M. S., Rexroad, C. E., Miller, R. H., VanRaden, P. M. & Da, Y., Jun 1997, In : Animal Genetics. 28, 3, p. 216-222 7 p.

Research output: Contribution to journalArticle

73 Scopus citations

Exclusion probabilities of 22 bovine microsatellite markers in fluorescent multiplexes for semiautomated parentage testing

Heyen, D. W., Beever, J. E., Da, Y., Evert, R. E., Green, C., Bates, S. R. E., Ziegle, J. S. & Lewin, H. A., Feb 1997, In : Animal Genetics. 28, 1, p. 21-27 7 p.

Research output: Contribution to journalArticle

103 Scopus citations