20072021
If you made any changes in Pure, your changes will be visible here soon.

Research Output 2007 2019

Filter
Article
2019
2 Citations (Scopus)

Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments

Wang, N., Yang, Y., Moore, M. J., Brockington, S. F., Walker, J. F., Brown, J. W., Liang, B., Feng, T., Edwards, C., Mikenas, J., Olivieri, J., Hutchison, V., Timoneda, A., Stoughton, T., Puente, R., Majure, L. C., Eggli, U. & Smith, S. A., Jan 1 2019, In : Molecular biology and evolution. 36, 1, p. 112-126 15 p.

Research output: Contribution to journalArticle

Family Conflict
Cactaceae
Didiereaceae
gene
Gene Duplication
2018
11 Citations (Scopus)

Disparity, diversity, and duplications in the Caryophyllales

Smith, S. A., Brown, J. W., Yang, Y., Bruenn, R., Drummond, C. P., Brockington, S. F., Walker, J. F., Last, N., Douglas, N. A. & Moore, M. J., Jan 1 2018, In : New Phytologist. 217, 2, p. 836-854 19 p.

Research output: Contribution to journalArticle

Caryophyllales
Phylogeny
phylogeny
Chloroplasts
Population Density
7 Citations (Scopus)

From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales

Walker, J. F., Yang, Y., Feng, T., Timoneda, A., Mikenas, J., Hutchison, V., Edwards, C., Wang, N., Ahluwalia, S., Olivieri, J., Walker-Hale, N., Majure, L. C., Puente, R., Kadereit, G., Lauterbach, M., Eggli, U., Flores-Olvera, H., Ochoterena, H., Brockington, S. F., Moore, M. J. & 1 others, Smith, S. A., Mar 1 2018, In : American journal of botany. 105, 3, p. 446-462 17 p.

Research output: Contribution to journalArticle

Cactaceae
Caryophyllales
cactus
carnivore
homology
9 Citations (Scopus)

Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events

Yang, Y., Moore, M. J., Brockington, S. F., Mikenas, J., Olivieri, J., Walker, J. F. & Smith, S. A., Jan 1 2018, In : New Phytologist. 217, 2, p. 855-870 16 p.

Research output: Contribution to journalArticle

Caryophyllales
Polyploidy
allopolyploidy
Transcriptome
transcriptome

Methods for exploring the plant tree of life

Gitzendanner, M. A., Yang, Y., Wickett, N. J., McKain, M. & Beaulieu, J. M., Mar 1 2018, In : Applications in Plant Sciences. 6, 3, e1039.

Research output: Contribution to journalArticle

methodology
method
15 Citations (Scopus)

Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales

Lopez-Nieves, S., Yang, Y., Timoneda, A., Wang, M., Feng, T., Smith, S. A., Brockington, S. F. & Maeda, H. A., Jan 1 2018, In : New Phytologist. 217, 2, p. 896-908 13 p.

Research output: Contribution to journalArticle

Betalains
Caryophyllales
betalains
Pigmentation
pigmentation
2 Citations (Scopus)

Repeated range expansion and niche shift in a volcanic hotspot archipelago: Radiation of C4 Hawaiian Euphorbia subgenus Chamaesyce (Euphorbiaceae)

Yang, Y., Morden, C. W., Sporck-Koehler, M. J., Sack, L., Wagner, W. L. & Berry, P. E., Jan 1 2018, In : Ecology and Evolution.

Research output: Contribution to journalArticle

Euphorbia
range expansion
archipelago
hot spot
niche
2017
8 Citations (Scopus)

An Efficient Field and Laboratory Workflow for Plant Phylotranscriptomic Projects

Yang, Y., Moore, M. J., Brockington, S. F., Timoneda, A., Feng, T., Marx, H. E., Walker, J. F. & Smith, S. A., Mar 1 2017, In : Applications in Plant Sciences. 5, 3, 1600128.

Research output: Contribution to journalArticle

RNA
sampling
Droseraceae
Caryophyllales
Cactaceae
15 Citations (Scopus)

Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales

Walker, J. F., Yang, Y., Moore, M. J., Mikenas, J., Timoneda, A., Brockington, S. F. & Smith, S. A., Jan 1 2017, In : American journal of botany. 104, 6, p. 858-867 10 p.

Research output: Contribution to journalArticle

Caryophyllales
gene
Dioncophyllaceae
Genes
Droseraceae
2015
51 Citations (Scopus)

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants

Smith, S. A., Moore, M. J., Brown, J. W. & Yang, Y., Aug 5 2015, In : BMC evolutionary biology. 15, 1, 150.

Research output: Contribution to journalArticle

gene duplication
gene
animal
phylogeny
animals
73 Citations (Scopus)

Dissecting molecular evolution in the highly diverse plant clade caryophyllales using transcriptome sequencing

Yang, Y., Moore, M. J., Brockington, S. F., Soltis, D. E., Wong, G. K. S., Carpenter, E. J., Zhang, Y., Chen, L., Yan, Z., Xie, Y., Sage, R. F., Covshoff, S., Hibberd, J. M., Nelson, M. N. & Smith, S. A., Aug 1 2015, In : Molecular biology and evolution. 32, 8, p. 2001-2014 14 p.

Research output: Contribution to journalArticle

Caryophyllales
Molecular Evolution
transcriptomics
Transcriptome
gene
58 Citations (Scopus)

Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales

Brockington, S. F., Yang, Y., Gandia-Herrero, F., Covshoff, S., Hibberd, J. M., Sage, R. F., Wong, G. K. S., Moore, M. J. & Smith, S. A., Sep 1 2015, In : New Phytologist. 207, 4, p. 1170-1180 11 p.

Research output: Contribution to journalArticle

Betalains
Caryophyllales
betalains
Pigmentation
pigmentation
2014
40 Citations (Scopus)

Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway

Horn, J. W., Xi, Z., Riina, R., Peirson, J. A., Yang, Y., Dorsey, B. L., Berry, P. E., Davis, C. C. & Wurdack, K. J., Dec 1 2014, In : Evolution. 68, 12, p. 3485-3504 20 p.

Research output: Contribution to journalArticle

Euphorbiaceae
Euphorbia
concentrating
crassulacean acid metabolism
Miocene
8 Citations (Scopus)

Large-scale patterns of stomatal traits in Tibetan and Mongolian grassland species

Yang, X., Yang, Y., Ji, C., Feng, T., Shi, Y., Lin, L., Ma, J. & He, J. S., Jan 1 2014, In : Basic and Applied Ecology. 15, 2, p. 122-132 11 p.

Research output: Contribution to journalArticle

plateaus
grasslands
grassland
stomata
plateau
70 Citations (Scopus)
Transcriptome
transcriptome
genome
Genome
matrix
2013
107 Citations (Scopus)

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.

Yang, Y. & Smith, S. A., Jan 1 2013, In : Unknown Journal. 14

Research output: Contribution to journalArticle

RNA
Genes
Ricinus
Benchmarking
Expressed Sequence Tags
2012
44 Citations (Scopus)

Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae)

Yang, Y., Riina, R., Morawetz, J. J., Haevermans, T., Aubriot, X. & Berry, P. E., Aug 14 2012, In : Taxon. 61, 4, p. 764-789 26 p.

Research output: Contribution to journalArticle

Euphorbia
Euphorbiaceae
phylogeny
taxonomy
phylogenetics
2011

(2011) Proposal to conserve the name Euphorbia acuta Engelm. Against E. Acuta Bellardi ex Colla (Euphorbiaceae)

Berry, P. E., Steinmann, V. & Yang, Y., Apr 1 2011, In : Taxon. 60, 2, p. 603-604 2 p.

Research output: Contribution to journalArticle

dicotyledon
species conservation
Euphorbia
Euphorbiaceae
conservation management
45 Citations (Scopus)
Euphorbiaceae
Euphorbia
Photosynthesis
exons
Exons
2007
14 Citations (Scopus)

Evaluating phylogenetic positions of four liverworts from New Zealand, Neogrollea notabilis, Jackiella curvata, Goebelobryum unguiculatum and Herzogianthus vaginatus, using three chloroplast genes

Hendry, T. A., Bin, W., Yang, Y., Davis, E. C., Braggins, J. E., Schuster, R. M. & Qiu, Y. L., Dec 1 2007, In : Bryologist. 110, 4, p. 738-751 14 p.

Research output: Contribution to journalArticle

liverwort
chloroplast
mosses and liverworts
chloroplasts
phylogenetics