19982021

Research output per year

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Research Output

2020

An adaptive test for meta-analysis of rare variant association studies

Yang, T., Kim, J., Wu, C., Ma, Y., Wei, P. & Pan, W., Jan 1 2020, In : Genetic epidemiology. 44, 1, p. 104-116 13 p.

Research output: Contribution to journalArticle

A powerful fine-mapping method for transcriptome-wide association studies

Wu, C. & Pan, W., Feb 1 2020, In : Human Genetics. 139, 2, p. 199-213 15 p.

Research output: Contribution to journalArticle

Integrating germline and somatic genetics to identify genes associated with lung cancer

Pattee, J., Zhan, X., Xiao, G. & Pan, W., Apr 1 2020, In : Genetic epidemiology. 44, 3, p. 233-247 15 p.

Research output: Contribution to journalArticle

Local epigenomic data are more informative than local genome sequence data in predicting enhancer-promoter interactions using neural networks

Xiao, M., Zhuang, Z. & Pan, W., Jan 2020, In : Genes. 11, 1, 41.

Research output: Contribution to journalArticle

Open Access

On High-Dimensional Constrained Maximum Likelihood Inference

Zhu, Y., Shen, X. & Pan, W., Jan 2 2020, In : Journal of the American Statistical Association. 115, 529, p. 217-230 14 p.

Research output: Contribution to journalArticle

Some statistical consideration in transcriptome-wide association studies

for the Alzheimer's Disease Neuroimaging Initiative, Apr 1 2020, In : Genetic epidemiology. 44, 3, p. 221-232 12 p.

Research output: Contribution to journalArticle

2019
1 Scopus citations

A simple convolutional neural network for prediction of enhancer-promoter interactions with DNA sequence data

Zhuang, Z., Shen, X. & Pan, W., Sep 1 2019, In : Bioinformatics. 35, 17, p. 2899-2906 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Constrained likelihood for reconstructing a directed acyclic Gaussian graph

Yuan, Y., Shen, X., Pan, W. & Wang, Z., Mar 1 2019, In : Biometrika. 106, 1, p. 109-125 17 p.

Research output: Contribution to journalArticle

1 Scopus citations

Integration of methylation QTL and enhancer-target gene maps with schizophrenia GWAS summary results identifies novel genes

Wu, C. & Pan, W., Oct 1 2019, In : Bioinformatics. 35, 19, p. 3576-3583 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Likelihood Ratio Tests for a Large Directed Acyclic Graph

Li, C., Shen, X. & Pan, W., Jan 1 2019, In : Journal of the American Statistical Association.

Research output: Contribution to journalArticle

2018

Adaptive SNP-Set Association Testing in Generalized Linear Mixed Models with Application to Family Studies

Park, J. Y., Wu, C., Basu, S., McGue, M. & Pan, W., Jan 1 2018, In : Behavior genetics. 48, 1, p. 55-66 12 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

An adaptive gene-based test for methylation data 06 Biological Sciences 0604 Genetics

Wu, C., Park, J. Y., Guan, W. & Pan, W., Sep 17 2018, In : BMC Proceedings. 12, 60.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

An adaptive gene-level association test for pedigree data 06 Biological Sciences 0604 Genetics

Park, J. Y., Wu, C. & Pan, W., Sep 17 2018, In : BMC genetics. 19, 68.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Improved use of small reference panels for conditional and joint analysis with gwas summary statistics

Deng, Y. & Pan, W., Jun 2018, In : Genetics. 209, 2, p. 401-408 8 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Integrating eQTL data with GWAS summary statistics in pathway-based analysis with application to schizophrenia

Wu, C. & Pan, W., Apr 2018, In : Genetic epidemiology. 42, 3, p. 303-316 14 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Integration of enhancer-promoter interactions with GWAS summary results identifies novel schizophrenia-associated genes and pathways

Wu, C. & Pan, W., Jul 2018, In : Genetics. 209, 3, p. 699-709 11 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Significance testing for allelic heterogeneity

Deng, Y. & Pan, W., Sep 2018, In : Genetics. 210, 1, p. 25-32 8 p.

Research output: Contribution to journalArticle

Open Access

TCM visualizes trajectories and cell populations from single cell data

Gong, W., Kwak, I. Y., Koyano-Nakagawa, N., Pan, W. & Garry, D. J., Dec 1 2018, In : Nature communications. 9, 1, 2749.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2017

Adaptive testing for association between two random vectors in moderate to high dimensions

Xu, Z., Xu, G. & Pan, W., Nov 2017, In : Genetic epidemiology. 41, 7, p. 599-609 11 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Adaptive testing for multiple traits in a proportional odds model with applications to detect SNP-brain network associations

for the Alzheimer's Disease Neuroimaging Initiative, Apr 1 2017, In : Genetic epidemiology. 41, 3, p. 259-277 19 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Adaptive testing of snp-brain functional connectivity association via a modular network analysis

Alzheimer's Disease Neuroimaging Initiative, Jan 1 2017, In : Pacific Symposium on Biocomputing. 0, 212679, p. 58-69 12 p.

Research output: Contribution to journalConference article

Open Access
1 Scopus citations

A novel and efficient algorithm for de novo discovery of mutated driver pathways in cancer

Liu, B., Wu, C., Shen, X. T. & Pan, W., Sep 2017, In : Annals of Applied Statistics. 11, 3, p. 1481-1512 32 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A powerful framework for integrating eqtl and gwas summary data

Xu, Z., Wu, C., Wei, P. & Pan, W., Nov 2017, In : Genetics. 207, 3, p. 893-902 10 p.

Research output: Contribution to journalArticle

Open Access
16 Scopus citations

Conditional analysis of multiple quantitative traits based on marginal GWAS summary statistics

Deng, Y. & Pan, W., Jul 2017, In : Genetic epidemiology. 41, 5, p. 427-436 10 p.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations
Open Access
12 Scopus citations

Gene- and pathway-based association tests for multiple traits with GWAS summary statistics

Kwak, I. Y. & Pan, W., Jan 1 2017, In : Bioinformatics. 33, 1, p. 64-71 8 p.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Imaging-wide association study: Integrating imaging endophenotypes in GWAS

Xu, Z., Wu, C. & Pan, W., Oct 1 2017, In : NeuroImage. 159, p. 159-169 11 p.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Testing genetic pleiotropy with GWAS summary statistics for marginal and conditional analyses

Deng, Y. & Pan, W., Dec 2017, In : Genetics. 207, 4, p. 1285-1299 15 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2016

Adaptive gene-and pathway-trait association testing with GWAS summary statistics

Kwak, I. Y. & Pan, W., Apr 15 2016, In : Bioinformatics. 32, 8, p. 1178-1184 7 p.

Research output: Contribution to journalArticle

25 Scopus citations

An adaptive association test for microbiome data

Wu, C., Chen, J., Kim, J. & Pan, W., May 19 2016, In : Genome medicine. 8, 1, 56.

Research output: Contribution to journalArticle

19 Scopus citations

An adaptive two-sample test for high-dimensional means

Xu, G., Lin, L., Wei, P. & Pan, W., Sep 1 2016, In : Biometrika. 103, 3, p. 609-624 16 p.

Research output: Contribution to journalArticle

7 Scopus citations

A new algorithm and theory for penalized regression-based clustering

Wu, C., Kwon, S., Shen, X. & Pan, W., Oct 1 2016, In : Journal of Machine Learning Research. 17

Research output: Contribution to journalArticle

6 Scopus citations

Binomial Mixture Model Based Association Testing to Account for Genetic Heterogeneity for GWAS

Xu, Z. & Pan, W., Apr 1 2016, In : Genetic epidemiology. 40, 3, p. 202-209 8 p.

Research output: Contribution to journalArticle

Carotid Atherosclerosis and Stroke in Atrial Fibrillation: The Atherosclerosis Risk in Communities Study

Bekwelem, W., Jensen, P. N., Norby, F. L., Soliman, E. Z., Agarwal, S. K., Lip, G. Y. H., Pan, W., Folsom, A. R., Longstreth, W. T., Alonso, A., Heckbert, S. R. & Chen, L. Y., Jun 1 2016, In : Stroke. 47, 6, p. 1643-1646 4 p.

Research output: Contribution to journalArticle

14 Scopus citations

Estimation of multiple networks in Gaussian mixture models

Gao, C., Zhu, Y., Shen, X. T. & Pan, W., Jan 1 2016, In : Electronic Journal of Statistics. 10, 1, p. 1133-1154 22 p.

Research output: Contribution to journalArticle

6 Scopus citations

Integrative and regularized principal component analysis of multiple sources of data

Liu, B., Shen, X. & Pan, W., Jun 15 2016, In : Statistics in Medicine. 35, 13, p. 2235-2250 16 p.

Research output: Contribution to journalArticle

8 Scopus citations

Nonlinear joint latent variable models and integrative tumor subtype discovery

Liu, B., Shen, X. T. & Pan, W., Apr 1 2016, In : Statistical Analysis and Data Mining. 9, 2, p. 106-116 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

On robust association testing for quantitative traits and rare variants

Wei, P., Cao, Y., Zhang, Y., Xu, Z., Kwak, I. Y., Boerwinkle, E. & Pan, W., Jan 1 2016, In : G3: Genes, Genomes, Genetics. 6, 12, p. 3941-3950 10 p.

Research output: Contribution to journalArticle

6 Scopus citations

Powerful and adaptive testing for multi-trait and Multi-SNP associations with GWAS and sequencing data

Alzheimer's Disease Neuroimaging Initiative, Jun 2016, In : Genetics. 203, 2, p. 715-731 17 p.

Research output: Contribution to journalArticle

17 Scopus citations
2015

A Bayesian partitioning model for the detection of multilocus effects in case-control studies

Ray, D., Li, X., Pan, W., Pankow, J. & Basu, S., Jul 22 2015, In : Human heredity. 79, 2, p. 69-79 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

A cautionary note on using secondary phenotypes in neuroimaging genetic studies

for the Alzheimer's Disease Neuroimaging Initiative, Nov 1 2015, In : NeuroImage. 121, p. 136-145 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

An Adaptive Association Test for Multiple Phenotypes with GWAS Summary Statistics

Kim, J., Bai, Y. & Pan, W., Dec 1 2015, In : Genetic epidemiology. 39, 8, p. 651-663 13 p.

Research output: Contribution to journalArticle

22 Scopus citations

A Novel Statistic for Global Association Testing Based on Penalized Regression

Austin, E., Shen, X. T. & Pan, W., Sep 1 2015, In : Genetic epidemiology. 39, 6, p. 415-426 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

A Powerful Pathway-Based Adaptive Test for Genetic Association with Common or Rare Variants

Pan, W., Kwak, I. Y. & Wei, P., Jan 1 2015, In : American Journal of Human Genetics. 97, 1, p. 86-98 13 p.

Research output: Contribution to journalArticle

29 Scopus citations

Approximate score-based testing with application to multivariate trait association analysis

Alzheimer's Disease Neuroimaging Initiative, Sep 1 2015, In : Genetic epidemiology. 39, 6, p. 469-479 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

Highly adaptive tests for group differences in brain functional connectivity

Alzheimer's Disease Neuroimaging Initiative, Jan 1 2015, In : NeuroImage: Clinical. 9, p. 625-639 15 p.

Research output: Contribution to journalArticle

10 Scopus citations

Principal Component Regression and Linear Mixed Model in Association Analysis of Structured Samples: Competitors or Complements?

Zhang, Y. & Pan, W., Mar 1 2015, In : Genetic epidemiology. 39, 3, p. 149-155 7 p.

Research output: Contribution to journalArticle

9 Scopus citations

Testing for polygenic effects in genome-wide association studies

Pan, W., Chen, Y. M. & Wei, P., May 1 2015, In : Genetic epidemiology. 39, 4, p. 306-316 11 p.

Research output: Contribution to journalArticle

8 Scopus citations

Testing Group Differences in Brain Functional Connectivity: Using Correlations or Partial Correlations?

Kim, J., Wozniak, J. R., Mueller, B. A. & Pan, W., May 1 2015, In : Brain connectivity. 5, 4, p. 214-231 18 p.

Research output: Contribution to journalArticle

9 Scopus citations