1981 …2023

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Article
2020

Automated plantation mapping in southeast asia using MODIS data and imperfect visual annotations

Jia, X., Khandelwal, A., Carlson, K. M., Gerber, J. S., West, P. C., Samberg, L. H. & Kumar, V., Feb 1 2020, In : Remote Sensing. 12, 4, 636.

Research output: Contribution to journalArticle

Open Access

Predicting diabetes clinical outcomes using longitudinal risk factor trajectories

Simon, G. J., Peterson, K. A., Castro, M. R., Steinbach, M. S., Kumar, V. & Caraballo, P. J., Jan 8 2020, In : BMC medical informatics and decision making. 20, 1, 6.

Research output: Contribution to journalArticle

Open Access
2019

Discovering genetic interactions bridging pathways in genome-wide association studies

Fang, G., Wang, W., Paunic, V., Heydari, H., Costanzo, M., Liu, X., Liu, X., VanderSluis, B., Oately, B., Steinbach, M., Van Ness, B., Schadt, E. E., Pankratz, N. D., Boone, C., Kumar, V. & Myers, C. L., Dec 1 2019, In : Nature communications. 10, 1, 4274.

Research output: Contribution to journalArticle

Open Access

Machine Learning for the Geosciences: Challenges and Opportunities

Karpatne, A., Ebert-Uphoff, I., Ravela, S., Babaie, H. A. & Kumar, V., Aug 1 2019, In : IEEE Transactions on Knowledge and Data Engineering. 31, 8, p. 1544-1554 11 p., 8423072.

Research output: Contribution to journalArticle

24 Scopus citations

Process-Guided Deep Learning Predictions of Lake Water Temperature

Read, J. S., Jia, X., Willard, J., Appling, A. P., Zwart, J. A., Oliver, S. K., Karpatne, A., Hansen, G. J. A., Hanson, P. C., Watkins, W., Steinbach, M. & Kumar, V., Nov 1 2019, In : Water Resources Research. 55, 11, p. 9173-9190 18 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2018

A cautionary note on decadal sea level pressure predictions from GCMs

Liess, S., Snyder, P. K., Kumar, A. & Kumar, V., Mar 2018, In : Advances in Climate Change Research. 9, 1, p. 43-56 14 p.

Research output: Contribution to journalArticle

Open Access

Delay Within the 3-Hour Surviving Sepsis Campaign Guideline on Mortality for Patients With Severe Sepsis and Septic Shock

Pruinelli, L., Westra, B. L., Yadav, P., Hoff, A., Steinbach, M., Kumar, V., Delaney, C. W. & Simon, G., Apr 1 2018, In : Critical care medicine. 46, 4, p. 500-505 6 p.

Research output: Contribution to journalArticle

42 Scopus citations

Heterogeneous Metric Learning of Categorical Data with Hierarchical Couplings

Zhu, C., Cao, L., Liu, Q., Yin, J. & Kumar, V., Jul 1 2018, In : IEEE Transactions on Knowledge and Data Engineering. 30, 7, p. 1254-1267 14 p.

Research output: Contribution to journalArticle

16 Scopus citations

Mapping burned areas in tropical forests using a novel machine learning framework

Mithal, V., Nayak, G., Khandelwal, A., Kumar, V., Nemani, R. & Oza, N. C., Jan 1 2018, In : Remote Sensing. 10, 1, 69.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
2017

An approach for global monitoring of surface water extent variations in reservoirs using MODIS data

Khandelwal, A., Karpatne, A., Marlier, M. E., Kim, J., Lettenmaier, D. P. & Kumar, V., Dec 1 2017, In : Remote Sensing of Environment. 202, p. 113-128 16 p.

Research output: Contribution to journalArticle

31 Scopus citations

A Teleconnection between the West Siberian Plain and the ENSO Region

Liess, S., Agrawal, S., Chatterjee, S. & Kumar, V., Jan 1 2017, In : Journal of Climate. 30, 1, p. 301-315

Research output: Contribution to journalArticle

8 Scopus citations

High spatiotemporal resolution of river planform dynamics from landsat: The rivMAP toolbox and results from the Ucayali river

Schwenk, J., Khandelwal, A., Fratkin, M., Kumar, V. & Foufoula-Georgiou, E., Jan 1 2017, In : Earth and Space Science. 4, 2, p. 46-75 30 p.

Research output: Contribution to journalArticle

Open Access
25 Scopus citations

Quantifying the effect of data quality on the validity of an eMeasure

Johnson, S. G., Speedie, S., Simon, G., Kumar, V. & Westra, B. L., Jan 1 2017, In : Applied clinical informatics. 8, 4, p. 1012-1021 10 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

RAPT: Rare Class Prediction in Absence of True Labels

Mithal, V., Nayak, G., Khandelwal, A., Kumar, V., Oza, N. C. & Nemani, R., Nov 1 2017, In : IEEE Transactions on Knowledge and Data Engineering. 29, 11, p. 2484-2497 14 p., 8010437.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Theory-guided data science: A new paradigm for scientific discovery from data

Karpatne, A., Atluri, G., Faghmous, J., Steinbach, M., Banerjee, A., Ganguly, A., Shekhar, S., Samatova, N. & Kumar, V., Oct 1 2017, In : IEEE Transactions on Knowledge and Data Engineering. 29, 10, p. 2318-2331 14 p., 7959606.

Research output: Contribution to journalArticle

Open Access
74 Scopus citations
2016

Application of an ontology for characterizing data quality for a secondary use of EHR data

Johnson, S. G., Speedie, S., Simon, G., Kumar, V. & Westra, B. L., Feb 10 2016, In : Applied clinical informatics. 7, 1, p. 69-88 20 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Exploring the predictability of 30-day extreme precipitation occurrence using a global SST-SLP correlation network

Lu, M., Lall, U., Kawale, J., Liess, S. & Kumar, V., Jan 1 2016, In : Journal of Climate. 29, 3, p. 1013-1029 17 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Monitoring land-cover changes: A machine-learning perspective

Karpatne, A., Jiang, Z., Vatsavai, R. R., Shekhar, S. & Kumar, V., Jun 2016, IEEE Geoscience and Remote Sensing Magazine, 4, 2, p. 8-21 14 p.

Research output: Contribution to specialist publicationArticle

29 Scopus citations
Open Access
5 Scopus citations

The Brain-Network Paradigm: Using Functional Imaging Data to Study How the Brain Works

Atluri, G., MacDonald, A., Lim, K. O. & Kumar, V., Oct 2016, Computer, 49, 10, p. 65-71 7 p.

Research output: Contribution to specialist publicationArticle

11 Scopus citations

Truncation and constitutive activation of the androgen receptor by diverse genomic rearrangements in prostate cancer

Henzler, C., Li, Y., Yang, R., McBride, T., Ho, Y., Sprenger, C., Liu, G., Coleman, I., Lakely, B., Li, R., Ma, S., Landman, S. R., Kumar, V., Hwang, T. H., Raj, G. V., Higano, C. S., Morrissey, C., Nelson, P. S., Plymate, S. R. & Dehm, S. M., Nov 29 2016, In : Nature communications. 7, 13668.

Research output: Contribution to journalArticle

Open Access
65 Scopus citations

Type 2 diabetes mellitus trajectories and associated risks

Oh, W., Kim, E., Castro, M. R., Caraballo, P. J., Kumar, V., Steinbach, M. S. & Simon, G. J., Mar 1 2016, In : Big Data. 4, 1, p. 25-30 6 p.

Research output: Contribution to journalArticle

16 Scopus citations
2015

A daily global mesoscale ocean eddy dataset from satellite altimetry

Faghmous, J. H., Frenger, I., Yao, Y., Warmka, R., Lindell, A. & Kumar, V., Jun 9 2015, In : Scientific Data. 2, 150028.

Research output: Contribution to journalArticle

88 Scopus citations

A Data Quality Ontology for the Secondary Use of EHR Data

Johnson, S., Speedie, S., Simon, G. J., Kumar, V. & Westra, B. L., Jan 1 2015, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2015, p. 1937-1946 10 p.

Research output: Contribution to journalArticle

10 Scopus citations

Connectivity cluster analysis for discovering discriminative subnetworks in schizophrenia

Atluri, G., Steinbach, M., Lim, K. O., Kumar, V. & Macdonald, A., Feb 1 2015, In : Human Brain Mapping. 36, 2, p. 756-767 12 p.

Research output: Contribution to journalArticle

11 Scopus citations

Mining patterns associated with mobility outcomes in home healthcare

Dey, S., Cooner, J., Delaney, C. W., Fakhoury, J., Kumar, V., Simon, G., Steinbach, M., Weed, J. & Westra, B. L., Jan 1 2015, In : Nursing research. 64, 4, p. 235-245 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

On the data-driven inference of modulatory networks in climate science: An application to West African rainfall

González, D. L., Angus, M. P., Tetteh, I. K., Bello, G. A., Padmanabhan, K., Pendse, S. V., Srinivas, S., Yu, J., Semazzi, F., Kumar, V. & Samatova, N. F., Jan 13 2015, In : Nonlinear Processes in Geophysics. 22, 1, p. 33-46 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

SubPatCNV: Approximate subspace pattern mining for mapping copy-number variations

Johnson, N., Zhang, H., Fang, G., Kumar, V. & Kuang, R., Jan 16 2015, In : BMC bioinformatics. 16, 1, 16.

Research output: Contribution to journalArticle

2014

A Big Data Guide to Understanding Climate Change: The Case for Theory-Guided Data Science

Faghmous, J. H. & Kumar, V., Sep 2014, In : Big Data. 2, 3, p. 155-163 9 p.

Research output: Contribution to journalArticle

61 Scopus citations

A reference based analysis framework for understanding anomaly detection techniques for symbolic sequences

Chandola, V., Mithal, V. & Kumar, V., May 1 2014, In : Data Mining and Knowledge Discovery. 28, 3, p. 702-735 34 p.

Research output: Contribution to journalArticle

2 Scopus citations

Clustering of elderly patient subgroups to identify medication-related readmission risks

Olson, C. H., Dey, S., Kumar, V., Monsen, K. A. & Westra, B. L., Sep 30 2014, In : International Journal of Medical Informatics. 85, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

12 Scopus citations

Different modes of variability over the Tasman Sea: Implications for regional climate

Liess, S., Kumar, A., Snyder, P. K., Kawale, J., Steinhaeuser, K., Semazzi, F. H. M., Ganguly, A. R., Samatova, N. F. & Kumar, V., Jan 1 2014, In : Journal of Climate. 27, 22, p. 8466-8486 21 p.

Research output: Contribution to journalArticle

8 Scopus citations

Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors

Bhargava, M., Becker, T. L., Viken, K. J., Jagtap, P. D., Dey, S., Steinbach, M. S., Wu, B., Kumar, V., Bitterman, P. B., Ingbar, D. H. & Wendt, C. H., Oct 7 2014, In : PloS one. 9, 10, e109713.

Research output: Contribution to journalArticle

25 Scopus citations

SHEAR: Sample heterogeneity estimation and assembly by reference

Landman, S. R., Hwang, T. H., Silverstein, K. A. T., Li, Y., Dehm, S. M., Steinbach, M. & Kumar, V., Jan 29 2014, In : BMC Genomics. 15, 1, 84.

Research output: Contribution to journalArticle

3 Scopus citations

Theory-guided data science for climate change

Faghmous, J. H., Banerjee, A., Shekhar, S., Steinbach, M., Kumar, V., Ganguly, A. R. & Samatova, N., Nov 2014, Computer, 47, 11, p. 74-78 5 p.

Research output: Contribution to specialist publicationArticle

9 Scopus citations

Toward enhanced understanding and projections of climate extremes using physics-guided data mining techniques

Ganguly, A. R., Kodra, E. A., Agrawal, A., Banerjee, A., Boriah, S., Chatterjee, S. N., Chatterjee, S. O., Choudhary, A., Das, D., Faghmous, J., Ganguli, P., Ghosh, S., Hayhoe, K., Hays, C., Hendrix, W., Fu, Q., Kawale, J., Kumar, D., Kumar, V., Liao, W. & 9 others, Liess, S., Mawalagedara, R., Mithal, V., Oglesby, R., Salvi, K., Snyder, P. K., Steinhaeuser, K., Wang, D. & Wuebbles, D., Jan 1 2014, In : Nonlinear Processes in Geophysics. 21, 4, p. 777-795 19 p.

Research output: Contribution to journalArticle

17 Scopus citations

Trends in big data analytics

Kambatla, K., Kollias, G., Kumar, V. & Grama, A., Jul 2014, In : Journal of Parallel and Distributed Computing. 74, 7, p. 2561-2573 13 p.

Research output: Contribution to journalArticle

385 Scopus citations
2013

A graph-based approach to find teleconnections in climate data

Kawale, J., Liess, S., Kumar, A., Steinbach, M., Snyder, P., Kumar, V., Ganguly, A. R., Samatova, N. F. & Semazzi, F., Jun 1 2013, In : Statistical Analysis and Data Mining. 6, 3, p. 158-179 22 p.

Research output: Contribution to journalArticle

16 Scopus citations

Associations between cortical thickness and general intelligence in children, adolescents and young adults

Menary, K., Collins, P. F., Porter, J. N., Muetzel, R., Olson, E. A., Kumar, V., Steinbach, M., Lim, K. O. & Luciana, M., Sep 1 2013, In : Intelligence. 41, 5, p. 597-606 10 p.

Research output: Contribution to journalArticle

34 Scopus citations

Large-scale integrative network-based analysis identifies common pathways disrupted by copy number alterations across cancers

Hwang, T. H., Atluri, G., Kuang, R., Kumar, V., Starr, T., Silverstein, K. A. T., Haverty, P. M., Zhang, Z. & Liu, J., Jan 1 2013, In : BMC Genomics. 14, 1, 440.

Research output: Contribution to journalArticle

20 Scopus citations

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

Schadt, E. E., Banerjee, O., Fang, G., Feng, Z., Wong, W. H., Zhang, X., Kislyuk, A., Clark, T. A., Luong, K., Keren-Paz, A., Chess, A., Kumar, V., Chen-Plotkin, A., Sondheimer, N., Korlach, J. & Kasarskis, A., Jan 1 2013, In : Genome research. 23, 1, p. 129-141 13 p.

Research output: Contribution to journalArticle

51 Scopus citations
10 Scopus citations

Toward a neurometric foundation for probabilistic independent component analysis of fMRI data

Poppe, A. B., Wisner, K., Atluri, G., Lim, K. O., Kumar, V. & MacDonald, A. W., Sep 1 2013, In : Cognitive, Affective and Behavioral Neuroscience. 13, 3, p. 641-659 19 p.

Research output: Contribution to journalArticle

20 Scopus citations
2012

Co-clustering phenome-genome for phenotype classification and disease gene discovery

Hwang, T., Atluri, G., Xie, M., Dey, S., Hong, C., Kumar, V. & Kuang, R., Oct 1 2012, In : Nucleic acids research. 40, 19, p. e146

Research output: Contribution to journalArticle

42 Scopus citations

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

Fang, G., Munera, D., Friedman, D. I., Mandlik, A., Chao, M. C., Banerjee, O., Feng, Z., Losic, B., Mahajan, M. C., Jabado, O. J., Deikus, G., Clark, T. A., Luong, K., Murray, I. A., Davis, B. M., Keren-Paz, A., Chess, A., Roberts, R. J., Korlach, J., Turner, S. W. & 3 others, Kumar, V., Waldor, M. K. & Schadt, E. E., Dec 1 2012, In : Nature biotechnology. 30, 12, p. 1232-1239 8 p.

Research output: Contribution to journalArticle

187 Scopus citations
40 Scopus citations

Mining low-support discriminative patterns from dense and high-dimensional data

Fang, G., Pandey, G., Wang, W., Gupta, M., Steinbach, M. & Kumar, V., Jan 2 2012, In : IEEE Transactions on Knowledge and Data Engineering. 24, 2, p. 279-294 16 p., 5645630.

Research output: Contribution to journalArticle

30 Scopus citations