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Research Output 1997 2019

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2019

The galaxy platform for reproducible affinity proteomic mass spectrometry data analysis

Stewart, P. A., Kuenzi, B. M., Mehta, S., Kumar, P., Johnson, J. E., Jagtap, P. D., Griffin, T. J. & Haura, E. B., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 249-261 13 p. (Methods in Molecular Biology; vol. 1977).

Research output: Chapter in Book/Report/Conference proceedingChapter

Galaxies
Proteomics
Mass Spectrometry
Workflow
Software
2017

Carbonylated Proteins and Their Metabolic Regulation: Overview of Mechanisms, Target Proteins, and Characterization Using Proteomic Methods

Afiuni-Zadeh, S. & Griffin, T. J., Apr 20 2017, Protein Carbonylation: Principles, Analysis, and Biological Implications. wiley, p. 110-130 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carbonylation
Proteins
Oxidative stress
Avidin
Biomarkers
1 Citation (Scopus)

Chapter 13: Using Galaxy for Proteomics

Guerrero, C. R., Jagtap, P. D., Johnson, J. E. & Griffin, T. J., Jan 1 2017, Proteome Informatics. Bessant, C. & Gaskell, S. J. (eds.). 5 ed. Royal Society of Chemistry, p. 289-320 32 p. (New Developments in Mass Spectrometry; vol. 2017-January, no. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

Galaxies
Mass spectrometry
Bioinformatics
Proteomics
Scalability

Comparative Metaproteomics to Study Environmental Changes

Matallana-Surget, S., Jagtap, P. D., Griffin, T. J., Beraud, M. & Wattiez, R., Oct 29 2017, Metagenomics: Perspectives, Methods, and Applications. Elsevier Inc., p. 327-363 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Aquatic ecosystems
Microorganisms
Ecosystems
Ecosystem
Workflow
2013
19 Citations (Scopus)

Mass spectrometry-based proteomics: Basic principles and emerging technologies and directions

Van Riper, S. K., de Jong, E., Carlis, J. V. & Griffin, T. J., Jan 1 2013, Radiation Proteomics: The Effects of Ionizing and Non-Ionizing Radiation on Cells and Tissues. Springer New York LLC, p. 1-35 35 p. (Advances in Experimental Medicine and Biology; vol. 990).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteomics
Mass spectrometry
Mass Spectrometry
Technology
Biological radiation effects
2012

Emerging non-invasively collected genomic and proteomic biomarkers for the early diagnosis of oral squamous cell carcinoma (OSCC)

Kooren, J. A., Rhodus, N. L. & Griffin, T. J., Dec 1 2012, Squamous Cell Carcinoma. Nova Science Publishers, Inc., p. 197-210 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomarkers
Proteomics
Mouth Neoplasms
Early Diagnosis
Squamous Cell Carcinoma
2011
4 Citations (Scopus)

Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures

Bandhakavi, S., Markowski, T. W., Xie, H. & Griffin, T. J., Nov 10 2011, Nanoproteomics: Methods and Protocols. Toms, S. & Weil, R. (eds.). p. 47-56 10 p. (Methods in Molecular Biology; vol. 790).

Research output: Chapter in Book/Report/Conference proceedingChapter

Firearms
Complex Mixtures
Proteomics
High Pressure Liquid Chromatography
Peptides