Projects per year
Personal profile
Research Interests
Laboratory Mission Statement. We use molecular and biochemical approaches in discerning fundamental pathways of gene expression and their regulation in the Kinetoplastids, prokaryotic protozoans responsible for several neglected tropical diseases. We stress the utilization and/or adaptation of state-of-the art technologies to solve long-standing questions in the molecular parasitology field, knowing that this is the most effective way to move the field forward. The basic knowledge we acquire is an essential platform from which others or ourselves can build programs in anti-parasitic drug discovery. Additionally, training scientists in basic research will allow our mission to extend to other fields, as these students and trainees move on to future positions. Finally, we believe in collaboration between lab members and with others in multiple scientific disciplines as the way to make optimal progress in today’s research environment.
Research overview. Many parasitic human pathogens are vector transmitted including T. cruzi, T. brucei, and the closely related Leishmania spp. T. cruzi is transmitted by the “kissing bug” and T. brucei by the tsetse fly. The environments of the human and insect hosts differ in temperature, pH, immune defenses, osmolarity, and nutrient availability. Therefore, trypanosomes transition through different life stages at which they are adapted to cope with the unique conditions of that stage. Often the same trypanosome species in different life stages appears morphologically very different, and metabolism differs to cope the nutrient availability of the environment. We study the trypanosome gene expression changes that are necessary for survival at different life stages.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
PhD, Molecular Biology, Cornell University
Award Date: Apr 1 2008
BS, Chemical Engineering, Biological Sciences, Michigan Technological University
Award Date: May 1 1996
Postdoctoral Fellow, SUNY Buffalo
Sep 1 2008 → Aug 20 2013
PhD thesis work, Boyce Thompson Institute
May 1 2003 → Jun 30 2008
External Positions
Member, RNA Society
Fingerprint
- 1 Similar Profiles
Projects
- 5 Finished
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The influence of genetic variability on respiratory metabolism of the Chagas disease parasite
Zimmer, S. L. (PI) & Rumbley, J. N. (CoI)
Whiteside Inst. for Clinical Research
1/1/23 → 12/31/24
Project: Research project
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Control of polyadenylation in the parasite mitochondrion
Zimmer, S. L. (PI) & Hampton, M. E. (CoI)
NIH Nat'l Inst of Allergy & Infect Dis
1/10/18 → 12/31/21
Project: Research project
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Life stage specific regulation of mitochondrial gene exp
Zimmer, S. L. (PI)
AMERICAN HEART GREATER MIDWEST AFF
7/1/16 → 12/20/16
Project: Research project
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AHA National Award Resubmission- Zimmer
Zimmer, S. L. (PI)
AMERICAN HEART ASSOCIATION, INC
7/1/16 → 9/30/20
Project: Research project
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Differentiation of Infectious Trypanosoma cruzi Parasite
Zimmer, S. L. (PI)
Whiteside Inst. for Clinical Research
1/1/15 → 5/1/16
Project: Research project
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Revisiting Trypanosome Mitochondrial Genome Mysteries: Broader and Deeper
Zimmer, S. L., Feb 2019, In: Trends in Parasitology. 35, 2, p. 102-104 3 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Gene expression to mitochondrial metabolism: Variability among cultured Trypanosoma cruzi strains
Kalem, M. C., Gerasimov, E. S., Vu, P. K. & Zimmer, S. L., May 2018, In: PloS one. 13, 5, e0197983.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
High throughput sequencing revolution reveals conserved fundamentals of U-indel editing
Zimmer, S. L., Simpson, R. M. & Read, L. K., Sep 1 2018, In: Wiley Interdisciplinary Reviews: RNA. 9, 5, e1487.Research output: Contribution to journal › Article › peer-review
Open Access26 Scopus citations -
Tail characteristics of Trypanosoma brucei mitochondrial transcripts are developmentally altered in a transcript-specific manner
Gazestani, V. H., Hampton, M., Shaw, A. K., Salavati, R. & Zimmer, S. L., Feb 2018, In: International Journal for Parasitology. 48, 2, p. 179-189 11 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
Trypanosomatid mitochondrial RNA editing: Dramatically complex transcript repertoires revealed with a dedicated mapping tool
Gerasimov, E. S., Gasparyan, A. A., Kaurov, I., Tichý, B., Logacheva, M. D., Kolesnikov, A. A., Lukeš, J., Yurchenko, V., Zimmer, S. L. & Flegontov, P., Jan 25 2018, In: Nucleic acids research. 46, 2, p. 765-781 17 p.Research output: Contribution to journal › Article › peer-review
Open Access24 Scopus citations
Datasets
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Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae
Albanaz, A. T. S., Carrington, M., Frolov, A. O., Ganyukova, A. I., Gerasimov, E. S., Kostygov, A. Y., Lukeš, J., Malysheva, M. N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S. L., Yurchenko, V. & Butenko, A., figshare, 2023
DOI: 10.6084/m9.figshare.c.6799406.v1, https://springernature.figshare.com/collections/Shining_the_spotlight_on_the_neglected_new_high-quality_genome_assemblies_as_a_gateway_to_understanding_the_evolution_of_Trypanosomatidae/6799406/1
Dataset
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Additional file 3 of Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae
Albanaz, A. T. S., Carrington, M., Frolov, A. O., Ganyukova, A. I., Gerasimov, E. S., Kostygov, A. Y., Lukeš, J., Malysheva, M. N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S. L., Yurchenko, V. & Butenko, A., figshare, 2023
DOI: 10.6084/m9.figshare.24002915, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Shining_the_spotlight_on_the_neglected_new_high-quality_genome_assemblies_as_a_gateway_to_understanding_the_evolution_of_Trypanosomatidae/24002915
Dataset
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Additional file 1 of Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae
Albanaz, A. T. S., Carrington, M., Frolov, A. O., Ganyukova, A. I., Gerasimov, E. S., Kostygov, A. Y., Lukeš, J., Malysheva, M. N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S. L., Yurchenko, V. & Butenko, A., figshare, 2023
DOI: 10.6084/m9.figshare.24002909, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Shining_the_spotlight_on_the_neglected_new_high-quality_genome_assemblies_as_a_gateway_to_understanding_the_evolution_of_Trypanosomatidae/24002909
Dataset
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Additional file 3 of Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae
Albanaz, A. T. S., Carrington, M., Frolov, A. O., Ganyukova, A. I., Gerasimov, E. S., Kostygov, A. Y., Lukeš, J., Malysheva, M. N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S. L., Yurchenko, V. & Butenko, A., figshare, 2023
DOI: 10.6084/m9.figshare.24002915.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Shining_the_spotlight_on_the_neglected_new_high-quality_genome_assemblies_as_a_gateway_to_understanding_the_evolution_of_Trypanosomatidae/24002915/1
Dataset
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Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae
Albanaz, A. T. S., Carrington, M., Frolov, A. O., Ganyukova, A. I., Gerasimov, E. S., Kostygov, A. Y., Lukeš, J., Malysheva, M. N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S. L., Yurchenko, V. & Butenko, A., figshare, 2023
DOI: 10.6084/m9.figshare.c.6799406, https://springernature.figshare.com/collections/Shining_the_spotlight_on_the_neglected_new_high-quality_genome_assemblies_as_a_gateway_to_understanding_the_evolution_of_Trypanosomatidae/6799406
Dataset
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Center for Women in Science and Medicine - Leadership Team
Zimmer, S. L. (Member)
Jan 1 2019 → …Activity: Other activity types › Other
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Alexander Dubcek Travel Award
Zimmer, S. L. (Recipient)
2016Activity: Other activity types › Types of Award - Prize (including medals and awards)
Press/Media
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How a Mask Fits Can Be as Important as What It’s Made Of
7/14/20
1 item of Media coverage
Press/Media: Expert Comment or Interview
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Experts Say Everyone Should Be Wearing Masks to Slow Spread of COVID-19
5/5/20
1 item of Media coverage
Press/Media: Expert Comment or Interview
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Research is a full-time job for some UMD students
7/26/15
1 item of Media coverage
Press/Media: Public Engagement Activities
Fellowships, Honors, and Prizes
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American Heart Association Research Leaders Academy
Zimmer, S. L. (Recipient), 2017
Prize: Prize (including medals and awards)