Robin R Shields-Cutler

2023

Pre-transplant and longitudinal changes in faecal microbiome characteristics are associated with subsequent development of chronic graft-versus-host disease

El Jurdi, N., Holtan, S. G., Hoeschen, A., Velguth, J., Hillmann, B., Betts, B. C., MacMillan, M. L., Weisdorf, D. J., Khoruts, A., Rashidi, A. & Shields-Cutler, R., Oct 2023, In: British journal of haematology. 203, 2, p. 288-294 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

2022

Host Species and Captivity Distinguish the Microbiome Compositions of a Diverse Zoo-Resident Non-Human Primate Population

Wills, M. O., Shields-Cutler, R. R., Brunmeier, E., Weissenborn, M., Murphy, T., Knights, D., Johnson, T. J. & Clayton, J. B., Sep 2022, In: Diversity. 14, 9, 715.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

2020

Obesity induces gut microbiota alterations and augments acute graft-versus-host disease after allogeneic stem cell transplantation

Khuat, L. T., Le, C. T., Pai, C. C. S., Shields-Cutler, R. R., Holtan, S. G., Rashidi, A., Atkins, S. L., Knights, D., Luna, J. I., Dunai, C., Wang, Z., Sturgill, I. R., Stoffel, K. M., Merleev, A. A., More, S. K., Maverakis, E., Raybould, H. E., Chen, M., Canter, R. J. & Monjazeb, A. M. & 7 others, Dave, M., Ferrara, J. L. M., Levine, J. E., Longo, D. L., Abedi, M., Blazar, B. R. & Murphy, W. J., Nov 25 2020, In: Science Translational Medicine. 12, 571, eaay7713.

Research output: Contribution to journal › Article › peer-review

Open Access

31 Scopus citations

SHOGUN: A modular, accurate and scalable framework for microbiome quantification

Hillmann, B., Al-Ghalith, G. A., Shields-Cutler, R. R., Zhu, Q., Knight, R. & Knights, D., Jul 1 2020, In: Bioinformatics. 36, 13, p. 4088-4090 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

33 Scopus citations

Shotgun sequencing of the faecal microbiome to predict response to steroids in patients with lower gastrointestinal acute graft-versus-host disease: An exploratory analysis

Turner, G., Smith, M., Hoeschen, A. L., Wilson, J. A., Kennedy, J., Abramson, M., Cao, Q., El Jurdi, N., MacMillan, M. L., Weisdorf, D. J., Blazar, B. R., Khoruts, A., Shields-Cutler, R. R., Knights, D., Holtan, S. G. & Rashidi, A., Nov 22 2020, In: British journal of haematology. 192, 3, p. e69-e73

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Wild primate microbiomes prevent weight gain in germ-free mice

Sidiropoulos, D. N., Al-Ghalith, G. A., Shields-Cutler, R. R., Ward, T. L., Johnson, A. J., Vangay, P., Knights, D., Kashyap, P. C., Xian, Y., Ramer-Tait, A. E. & Clayton, J. B., Dec 2020, In: Animal Microbiome. 2, 1, 16.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

2019

Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus)

Clayton, J. B., Shields-Cutler, R. R., Hoops, S. L., Al-Ghalith, G. A., Sha, J. C. M., Johnson, T. J. & Knights, D., Oct 1 2019, In: American journal of primatology. 81, 10-11, e22977.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans

Johnson, A. J., Personalized Microbiome Class Students, Shmagel, A. K. & Abernathy, B. E., Jun 12 2019, In: Cell Host and Microbe. 25, 6, p. 789-802.e5

Research output: Contribution to journal › Article › peer-review

Open Access

416 Scopus citations

Dysbiosis patterns during re-induction/salvage versus induction chemotherapy for acute leukemia

Rashidi, A., Kaiser, T., Shields-Cutler, R. R., Graiziger, C., Holtan, S. G., Rehman, T. U., Wasko, J., Weisdorf, D. J., Dunny, G. M., Khoruts, A. & Staley, C. M., Dec 1 2019, In: Scientific reports. 9, 1, 6083.

Research output: Contribution to journal › Article › peer-review

Open Access

35 Scopus citations

Early E. Casseliflavus gut colonization and outcomes of allogeneic hematopoietic cell transplantation

Rashidi, A., Ebadi, M., Shields-Cutler, R. R., Kruziki, K., Manias, D. A., Barnes, A. M. T., DeFor, T. E., Ferrieri, P., Young, J. A. H., Knights, D., Blazar, B. R., Weisdorf, D. J. & Dunny, G. M., Aug 1 2019, In: PloS one. 14, 8, e0220850.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

Repeated vaginal exposures to the common cosmetic and household preservative methylisothiazolinone induce persistent, mast cell-dependent genital pain in ND4 mice

Arriaga-Gomez, E., Kline, J., Emanuel, E., Neamonitaki, N., Yangdon, T., Zacheis, H., Pasha, D., Lim, J., Bush, S., Boo, B., Mengistu, H., Kinnamon, R., Shields-Cutler, R., Wattenberg, E. & Chatterjea, D., Nov 1 2019, In: International journal of molecular sciences. 20, 21, 5361.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders

Saffouri, G. B., Shields-Cutler, R. R., Chen, J., Yang, Y., Lekatz, H. R., Hale, V. L., Cho, J. M., Battaglioli, E. J., Bhattarai, Y., Thompson, K. J., Kalari, K. K., Behera, G., Berry, J. C., Peters, S. A., Patel, R., Schuetz, A. N., Faith, J. J., Camilleri, M., Sonnenburg, J. L. & Farrugia, G. & 4 others, Swann, J. R., Grover, M., Knights, D. & Kashyap, P. C., Dec 1 2019, In: Nature communications. 10, 1, 2012.

Research output: Contribution to journal › Article › peer-review

Open Access

175 Scopus citations

2018

Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity

Zhang, X. S., Li, J., Krautkramer, K. A., Badri, M., Battaglia, T., Borbet, T. C., Koh, H., Ng, S., Sibley, R. A., Li, Y., Pathmasiri, W., Jindal, S., Shields-Cutler, R. R., Hillmann, B., Al-Ghalith, G. A., Ruiz, V. E., Livanos, A., Van‘t Wout, A. B., Nagalingam, N. & Rogers, A. B. & 9 others, Sumner, S. J., Knights, D., Denu, J. M., Li, H., Ruggles, K. V., Bonneau, R., Williamson, R. A., Rauch, M. & Blaser, M. J., Jul 24 2018, In: eLife. 7, e37816.

Research output: Contribution to journal › Article › peer-review

Open Access

80 Scopus citations

Evaluating the information content of shallow shotgun metagenomics

Hillmann, B., Al-Ghalith, G. A., Shields-Cutler, R. R., Zhu, Q., Gohl, D. M., Beckman, K. B., Knight, R. & Knights, D., Nov 1 2018, In: mSystems. 3, 6, e00069.

Research output: Contribution to journal › Article › peer-review

Open Access

273 Scopus citations

Pretransplant Gut Colonization with Intrinsically Vancomycin-Resistant Enterococci (E. gallinarum and E. casseliflavus) and Outcomes of Allogeneic Hematopoietic Cell Transplantation

Rashidi, A., Ebadi, M., Shields-Cutler, R. R., De For, T. E., Al-Ghalith, G. A., Ferrieri, P., Young, J.-A. H., Dunny, G. M., Knights, D. & Weisdorf, D. J., Jun 2018, In: Biology of Blood and Marrow Transplantation. 24, 6, p. 1260-1263 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

SplinectomeR enables group comparisons in longitudinal microbiome studies

Shields-Cutler, R. R., Al-Ghalith, G. A., Yassour, M. & Knights, D., Apr 23 2018, In: Frontiers in Microbiology. 9, APR, 785.

Research output: Contribution to journal › Article › peer-review

Open Access

44 Scopus citations

US Immigration Westernizes the Human Gut Microbiome

Vangay, P., Johnson, A. J., Ward, T. L., Al-Ghalith, G. A., Shields-Cutler, R. R., Hillmann, B. M., Lucas, S. K., Beura, L. K., Thompson, E. A., Till, L. M., Batres, R., Paw, B., Pergament, S. L., Saenyakul, P., Xiong, M., Kim, A. D., Kim, G., Masopust, D., Martens, E. C. & Angkurawaranon, C. & 4 others, McGready, R., Kashyap, P. C., Culhane-Pera, K. A. & Knights, D., Nov 1 2018, In: Cell. 175, 4, p. 962-972.e10

Research output: Contribution to journal › Article › peer-review

Open Access

489 Scopus citations

2016

Human metabolome-derived cofactors are required for the antibacterial activity of siderocalin in urine

Shields-Cutler, R. R., Crowley, J. R., Miller, C. D., Stapleton, A. E., Cui, W. & Henderson, J. P., Dec 9 2016, In: Journal of Biological Chemistry. 291, 50, p. 25901-25910 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

29 Scopus citations

2015

Human urinary composition controls antibacterial activity of siderocalin

Shields-Cutler, R. R., Crowley, J. R., Hung, C. S., Stapleton, A. E., Aldrich, C. C., Marschall, J. & Henderson, J. P., Jun 26 2015, In: Journal of Biological Chemistry. 290, 26, p. 15949-15960 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

43 Scopus citations

2011

Rapid divergence of two classes of haemophilus ducreyi

Ricotta, E. E., Wang, N., Cutler, R., Lawrence, J. G. & Humphreys, T. L., Jun 2011, In: Journal of bacteriology. 193, 12, p. 2941-2947 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

13 Scopus citations

Robin R Shields-Cutler

Research output

Search results