Rendong Yang

20102023
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Research Output 2010 2019

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Article
2019
2 Citations (Scopus)

ScanNeo: Identifying indel-derived neoantigens using RNA-Seq data

Wang, T. Y., Wang, L., Alam, S. K., Hoeppner, L. H., Yang, R. & Birol, I., Oct 15 2019, In : Bioinformatics. 35, 20, p. 4159-4161 3 p.

Research output: Contribution to journalArticle

RNA
Melanoma
DNA Sequencing
Python
Prostate Cancer
2018
2 Citations (Scopus)

Indel detection from DNA and RNA sequencing data with transIndel

Yang, R., Van Etten, J. L. & Dehm, S. M., Apr 19 2018, In : BMC Genomics. 19, 1, 270.

Research output: Contribution to journalArticle

Open Access
RNA Sequence Analysis
DNA Sequence Analysis
RNA
Prostatic Neoplasms
RNA Splicing
9 Citations (Scopus)

Interleukin-15 Complex Treatment Protects Mice from Cerebral Malaria by Inducing Interleukin-10-Producing Natural Killer Cells

Burrack, K. S., Huggins, M. A., Taras, E., Dougherty, P., Henzler, C. M., Yang, R., Alter, S., Jeng, E. K., Wong, H. C., Felices, M., Cichocki, F., Miller, J. S., Hart, G. T., Johnson, A. J., Jameson, S. C. & Hamilton, S. E., Apr 17 2018, In : Immunity. 48, 4, p. 760-772.e4

Research output: Contribution to journalArticle

Open Access
Cerebral Malaria
Interleukin-15
Natural Killer Cells
Interleukin-10
Blood-Brain Barrier
11 Citations (Scopus)

Patient-derived Models of Abiraterone- and Enzalutamide-resistant Prostate Cancer Reveal Sensitivity to Ribosome-directed Therapy

Lawrence, M. G., Obinata, D., Sandhu, S., Selth, L. A., Wong, S. Q., Porter, L. H., Lister, N., Pook, D., Pezaro, C. J., Goode, D. L., Rebello, R. J., Clark, A. K., Papargiris, M., Van Gramberg, J., Hanson, A. R., Banks, P., Wang, H., Niranjan, B., Keerthikumar, S., Hedwards, S. & 32 others, Huglo, A., Yang, R., Henzler, C., Li, Y., Lopez-Campos, F., Castro, E., Toivanen, R., Azad, A., Bolton, D., Goad, J., Grummet, J., Harewood, L., Kourambas, J., Lawrentschuk, N., Moon, D., Murphy, D. G., Sengupta, S., Snow, R., Thorne, H., Mitchell, C., Pedersen, J., Clouston, D., Norden, S., Ryan, A., Dehm, S. M., Tilley, W. D., Pearson, R. B., Hannan, R. D., Frydenberg, M., Furic, L., Taylor, R. A. & Risbridger, G. P., Nov 1 2018, In : European Urology. 74, 5, p. 562-572 11 p.

Research output: Contribution to journalArticle

Open Access
Ribosomes
Androgen Receptors
Prostatic Neoplasms
Castration
Heterografts
2017
33 Citations (Scopus)

Androgen receptor variant AR-V9 is coexpressed with AR-V7 in prostate cancer metastases and predicts abiraterone resistance

Kohli, M., Ho, Y., Hillman, D. W., Van Etten, J. L., Henzler, C., Yang, R., Sperger, J. M., Li, Y., Tseng, E., Hon, T., Clark, T., Tan, W., Carlson, R. E., Wang, L., Sicotte, H., Thai, H., Jimenez, R., Huang, H., Vedell, P. T., Eckloff, B. W. & 9 others, Quevedo, J. F., Pitot, H. C., Costello, B. A., Jen, J., Wieben, E. D., Silverstein, K. A. T., Lang, J. M., Wang, L. & Dehm, S. M., Aug 15 2017, In : Clinical Cancer Research. 23, 16, p. 4704-4715 12 p.

Research output: Contribution to journalArticle

Open Access
Androgen Receptors
Prostatic Neoplasms
Neoplasm Metastasis
Castration
abiraterone
14 Citations (Scopus)

Antagonism of B cell enhancer networks by STAT5 drives leukemia and poor patient survival

Katerndahl, C. D. S., Heltemes-Harris, L. M., Willette, M. J. L., Henzler, C. M., Frietze, S., Yang, R., Schjerven, H., Silverstein, K. A. T., Ramsey, L. B., Hubbard, G., Wells, A. D., Kuiper, R. P., Scheijen, B., van Leeuwen, F. N., Müschen, M., Kornblau, S. M. & Farrar, M. A., May 18 2017, In : Nature Immunology. 18, 6, p. 694-704 11 p.

Research output: Contribution to journalArticle

Precursor Cell Lymphoblastic Leukemia-Lymphoma
Leukemia
B-Lymphocytes
STAT5 Transcription Factor
Survival
9 Citations (Scopus)

Bypassing drug resistance mechanisms of prostate cancer with small molecules that target androgen receptor–chromatin interactions

Dalal, K., Che, M., Que, N. S., Sharma, A., Yang, R., Lallous, N., Borgmann, H., Ozistanbullu, D., Tse, R., Ban, F., Li, H., Tam, K. J., Roshan-Moniri, M., LeBlanc, E., Gleave, M. E., Gewirth, D. T., Dehm, S. M., Cherkasov, A. & Rennie, P. S., Oct 1 2017, In : Molecular Cancer Therapeutics. 16, 10, p. 2281-2291 11 p.

Research output: Contribution to journalArticle

Open Access
Androgen Receptors
Drug Resistance
Androgens
Prostatic Neoplasms
Androgen Receptor Antagonists
11 Citations (Scopus)

Targeting a single alternative polyadenylation site coordinately blocks expression of androgen receptor mRNA splice variants in prostate cancer

Van Etten, J. L., Nyquist, M., Li, Y., Yang, R., Ho, Y., Johnson, R., Ondigi, O., Voytas, D. F., Henzler, C. & Dehm, S. M., Oct 1 2017, In : Cancer Research. 77, 19, p. 5228-5235 8 p.

Research output: Contribution to journalArticle

Polyadenylation
Androgen Receptors
Prostatic Neoplasms
Messenger RNA
Castration
2016
31 Citations (Scopus)

Cerebellar Transcriptome Profiles of ATXN1 Transgenic Mice Reveal SCA1 Disease Progression and Protection Pathways

Ingram, M., Wozniak, E. A. L., Duvick, L., Yang, R., Bergmann, P., Carson, R., O'Callaghan, B., Zoghbi, H. Y., Henzler, C. & Orr, H. T., Mar 16 2016, In : Neuron. 89, 6, p. 1194-1207 14 p.

Research output: Contribution to journalArticle

Spinocerebellar Ataxias
Purkinje Cells
Transcriptome
Transgenic Mice
Disease Progression
37 Citations (Scopus)

Lineage-specific effector signatures of invariant NKT Cells are shared amongst gd T, Innate Lymphoid, and Th Cells

Lee, Y. J., Starrett, G. J., Lee, S. T., Yang, R., Henzler, C. M., Jameson, S. C. & Hogquist, K. A., Aug 15 2016, In : Journal of Immunology. 197, 4, p. 1460-1470 11 p.

Research output: Contribution to journalArticle

Natural Killer T-Cells
Lymphocytes
T-Lymphocytes
Th17 Cells
Th2 Cells
47 Citations (Scopus)

Truncation and constitutive activation of the androgen receptor by diverse genomic rearrangements in prostate cancer

Henzler, C., Li, Y., Yang, R., McBride, T., Ho, Y., Sprenger, C., Liu, G., Coleman, I., Lakely, B., Li, R., Ma, S., Landman, S. R., Kumar, V., Hwang, T. H., Raj, G. V., Higano, C. S., Morrissey, C., Nelson, P. S., Plymate, S. R. & Dehm, S. M., Nov 29 2016, In : Nature communications. 7, 13668.

Research output: Contribution to journalArticle

Androgen Receptors
Prostatic Neoplasms
cancer
Chemical activation
activation
2015
21 Citations (Scopus)
Boidae
Genome
Technology
Costs and Cost Analysis
Sensitivity and Specificity
2014
20 Citations (Scopus)

EgoNet: Identification of human disease ego-network modules

Yang, R., Bai, Y., Qin, Z. & Yu, T., Apr 28 2014, In : BMC Genomics. 15, 1, 314.

Research output: Contribution to journalArticle

Forensic Anthropology
Ego
Triple Negative Breast Neoplasms
Genes
Biomarkers
66 Citations (Scopus)

The central role of EED in the orchestration of polycomb group complexes

Cao, Q., Wang, X., Zhao, M., Yang, R., Malik, R., Qiao, Y., Poliakov, A., Yocum, A. K., Li, Y., Chen, W., Cao, X., Jiang, X., Dahiya, A., Harris, C., Feng, F. Y., Kalantry, S., Qin, Z. S., Dhanasekaran, S. M. & Chinnaiyan, A. M., Jan 24 2014, In : Nature communications. 5, 3127.

Research output: Contribution to journalArticle

Polycomb Repressive Complex 1
Polycomb Repressive Complex 2
Epigenomics
Polycomb-Group Proteins
Ubiquitin-Protein Ligases
426 Citations (Scopus)

Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer

Asangani, I. A., Dommeti, V. L., Wang, X., Malik, R., Cieslik, M., Yang, R., Escara-Wilke, J., Wilder-Romans, K., Dhanireddy, S., Engelke, C., Iyer, M. K., Jing, X., Wu, Y. M., Cao, X., Qin, Z. S., Wang, S., Feng, F. Y. & Chinnaiyan, A. M., Jan 1 2014, In : Nature. 510, 7504, p. 278-282 5 p.

Research output: Contribution to journalArticle

Castration
Androgen Receptors
Prostatic Neoplasms
Proteins
Therapeutics
2013
39 Citations (Scopus)

Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation

Gao, S., Xiong, J., Zhang, C., Berquist, B. R., Yang, R., Zhao, M., Molascon, A. J., Kwiatkowski, S. Y., Yuan, D., Qin, Z., Wen, J., Kapler, G. M., Andrews, P. C., Miao, W. & Liu, Y., Aug 1 2013, In : Genes and Development. 27, 15, p. 1662-1679 18 p.

Research output: Contribution to journalArticle

Tetrahymena
DNA Replication
Histones
Histone Code
Tetrahymena thermophila
2011
10 Citations (Scopus)

LSPR: An integrated periodicity detection algorithm for unevenly sampled temporal microarray data

Yang, R., Zhang, C. & Su, Z., Apr 1 2011, In : Bioinformatics. 27, 7, p. 1023-1025 3 p., btr041.

Research output: Contribution to journalArticle

Periodicity
Microarrays
Microarray Data
Time series
Linear Filtering
20 Citations (Scopus)

Transcriptome phase distribution analysis reveals diurnal regulated biological processes and key pathways in rice flag leaves and seedling leaves

Xu, W., Yang, R., Li, M., Xing, Z., Yang, W., Chen, G., Guo, H., Gong, X., Du, Z., Zhang, Z., Hu, X., Wang, D., Qian, Q., Wang, T., Su, Z. & Xue, Y., Mar 10 2011, In : PloS one. 6, 3, e17613.

Research output: Contribution to journalArticle

Biological Phenomena
Seedlings
Transcriptome
transcriptome
Genes
2010
70 Citations (Scopus)

Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation

Yang, R. & Su, Z., Jun 1 2010, In : Bioinformatics. 26, 12, btq189.

Research output: Contribution to journalArticle

Spectral Estimation
Microarrays
Microarray Data
Time series
Harmonic