Projects per year
Personal profile
Research interests
Pratik Jagtap is a Research Assistant Professor at the Department of Biochemistry, Molecular Biology, and Biophysics at the University of Minnesota. He has helped manage the Galaxy-P project from its inception. His current research interests include developing analytical workflows for the analysis of complex data, with particular emphasis on MS-based proteomics applications in metaproteomics, proteogenomics, and data-independent acquisition (DIA) data analysis.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
External Positions
Chair, Proteomics Research Group at the Association of Biomolecular Research Facilities
Aug 1 2018 → Jul 31 2020
Research Interest Keywords
- Metaproteomics
- Proteomics
- Bioinformatics
- Proteogenomics
- Multi-Omics
Fingerprint
The Fingerprint is created by mining the titles and abstracts of the person's research outputs and projects/funding awards to create an index of weighted terms from discipline-specific thesauri.
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Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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A Galaxy-based multi-omic informatics hub for cancer res
Griffin, T. J., Hegeman, A. D., Jagtap, P. D., Johnson, J. E., Lynch, B. J. & Wennblom, T.
NIH NATIONAL CANCER INSTITUTE (NCI)
5/18/16 → 4/30/21
Project: Research project
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Bioinformatics Analysis of Functions Expressed by Microbiomes
American Society for Microbiology
3/1/20 → 12/1/21
Project: Research project
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Microbiome-derived regulators of therapy-resistant colorectal tumors
Griffin, T. J., Jagtap, P. D. & Subramanian, S.
NIH NATIONAL CANCER INSTITUTE (NCI)
8/9/22 → 7/31/23
Project: Research project
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Identifying the Disease-Defining Autoantibodies in Canine Addison's Disease
Friedenberg, S. G., Griffin, T. J. & Jagtap, P. D.
3/1/18 → 3/31/23
Project: Research project
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Mechanisms of Anticancer Agents Selective against Drug R
Xing, C., Burke, M., Jagtap, P. D., Remmel, R. P., Thomas, D. D., Zhou, X. & Anderson, L.
NIH NATIONAL CANCER INSTITUTE (NCI)
9/17/12 → 6/30/16
Project: Research project
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Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms
Thuy-Boun, P. S., Mehta, S., Gruening, B., McGowan, T., Nguyen, A., Rajczewski, A. T., Johnson, J. E., Griffin, T. J., Wolan, D. W. & Jagtap, P. D., Feb 5 2021, In: Journal of Proteome Research. 20, 2, p. 1451-1454 4 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Precursor intensity-based label-free quantification software tools for proteomic and multi-omic analysis within the galaxy platform
Mehta, S., Easterly, C. W., Sajulga, R., Millikin, R. J., Argentini, A., Eguinoa, I., Martens, L., Shortreed, M. R., Smith, L. M., McGowan, T., Kumar, P., Johnson, J. E., Griffin, T. J. & Jagtap, P. D., Jul 8 2020, In: Proteomes. 8, 3, 15.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
A review of the scientific rigor, reproducibility, and transparency studies conducted by the ABRF research groups
Mische, S. M., Fisher, N. C., Meyn, S. M., Church, K. S., Hegstad-Davies, R. L., Weis-Garcia, F., Adams, M., Ashton, J. M., Delventhal, K. M., Dragon, J. A., Holmes, L., Jagtap, P., Kubow, K. E., Mason, C. E., Palmblad, M., Searle, B. C., Turck, C. W. & Knudtson, K. L., Apr 2020, In: Journal of Biomolecular Techniques. 31, 1, p. 11-26 16 p.Research output: Contribution to journal › Review article › peer-review
7 Scopus citations -
An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples
Weise, D. O., Kruk, M. E., Higgins, L. A., Markowski, T. W., Jagtap, P. D., Mehta, S. P., Mickelson, A., Parker, L. L., Wendt, C. H. & Griffin, T. J., Dec 2023, In: Clinical Proteomics. 20, 1, 14.Research output: Contribution to journal › Article › peer-review
Open Access -
Galaxy Training: A powerful framework for teaching!
Hiltemann, S., Rasche, H., Gladman, S., Hotz, H. R., Larivière, D., Blankenberg, D., Jagtap, P. D., Wollmann, T., Bretaudeau, A., Goué, N., Griffin, T. J., Royaux, C., Bras, Y. L., Mehta, S., Syme, A., Coppens, F., Droesbeke, B., Soranzo, N., Bacon, W., Psomopoulos, F., & 13 others, Jan 2023, In: PLoS computational biology. 19, 1, e1010752.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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iPRG-2020: Proteome Informatics Research Group Study on Metaproteomics
Jagtap, P. D., Weintraub, S. T., Davis, D., Harvey, A., Hoopmann, M., Käll, L., Payne, S. H., Perez-Riverol, Y. & Palmblad, M., ZENODO, 2021
DOI: 10.5281/zenodo.4599626, https://zenodo.org/record/4599626
Dataset
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The 2020 ABRF Beer Study: beer proteomics at the global scale
Phinney, B. S., Tsai, H., Marcus, A., Fox, G., Ding, H., Herring, L. E., Jagtap, P. D., Kirkpatrick, J., Kumar, V., Midha, M. K., Martin, L., Palmblad, M., Shan, B., Stemmer, P. M., Wang, Y., Polasky, D. A., Carr, A., Shortreed, M. & Neely, B. A., ZENODO, 2021
DOI: 10.5281/zenodo.5646304, https://zenodo.org/record/5646304
Dataset