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Research Output 2001 2019

2001
15 Citations (Scopus)

Understory plant establishment on old-growth stumps and the forest floor in western Washington

Kennedy, P. G. & Quinn, T., Nov 15 2001, In : Forest Ecology and Management. 154, 1-2, p. 193-200 8 p.

Research output: Contribution to journalArticle

Rubus spectabilis
ground vegetation
coarse woody debris
plant establishment
stumps
2003
43 Citations (Scopus)

Propagule size and predispersal damage by insects affect establishment and early growth of mangrove seedlings

Sousa, W. P., Kennedy, P. G. & Mitchell, B. J., Jan 1 2003, In : Oecologia. 135, 4, p. 564-575 12 p.

Research output: Contribution to journalArticle

propagule
mangrove
seedling
insect
insects
137 Citations (Scopus)

There is high potential for the formation of common mycorrhizal networks between understorey and canopy trees in a mixed evergreen forest

Kennedy, P. G., Izzo, A. D. & Bruns, T. D., Dec 1 2003, In : Journal of Ecology. 91, 6, p. 1071-1080 10 p.

Research output: Contribution to journalArticle

evergreen forest
mixed forest
understory
Lithocarpus
canopy
2004
43 Citations (Scopus)

The importance of seed reserves for seedling performance: An integrated approach using morphological, physiological, and stable isotope techniques

Kennedy, P. G., Hausmann, N. J., Wenk, E. H. & Dawson, T. E., Dec 1 2004, In : Oecologia. 141, 4, p. 547-554 8 p.

Research output: Contribution to journalArticle

integrated approach
stable isotopes
stable isotope
seedling
seed
2005
93 Citations (Scopus)
Pinus muricata
Rhizopogon
Pinus
Meristem
Seedlings
2006
30 Citations (Scopus)
facilitation
Pseudotsuga
sapling
grasslands
grassland
30 Citations (Scopus)

The effect of different pine hosts on the sampling of Rhizopogon spore banks in five Eastern Sierra Nevada forests

Rusca, T. A., Kennedy, P. G. & Bruns, T. D., May 1 2006, In : New Phytologist. 170, 3, p. 551-560 10 p.

Research output: Contribution to journalArticle

Rhizopogon
Pinus
Bioassay
Spores
spores
2007
222 Citations (Scopus)

A strong species-area relationship for eukaryotic soil microbes: Island size matters for ectomycorrhizal fungi

Peay, K. G., Bruns, T. D., Kennedy, P. G., Bergemann, S. E. & Garbelotto, M., Jun 1 2007, In : Ecology letters. 10, 6, p. 470-480 11 p.

Research output: Contribution to journalArticle

species-area relationship
soil microorganisms
species richness
fungus
species diversity
55 Citations (Scopus)

Competitive interactions among three ectomycorrhizal fungi and their relation to host plant performance

Kennedy, P. G., Hortal, S., Bergemann, S. E. & Bruns, T. D., Nov 1 2007, In : Journal of Ecology. 95, 6, p. 1338-1345 8 p.

Research output: Contribution to journalArticle

host plant
host plants
fungus
fungi
biomass
50 Citations (Scopus)

Determining the outcome of field-based competition between two Rhizopogon species using real-time PCR

Kennedy, P. G., Bergemann, S. E., Hortal, S. & Bruns, T. D., Feb 1 2007, In : Molecular ecology. 16, 4, p. 881-890 10 p.

Research output: Contribution to journalArticle

Rhizopogon
Seedlings
polymerase chain reaction
Real-Time Polymerase Chain Reaction
quantitative polymerase chain reaction
47 Citations (Scopus)

Different soil moisture conditions change the outcome of the ectomycorrhizal symbiosis between Rhizopogon species and Pinus muricata

Kennedy, P. G. & Peay, K. G., Feb 1 2007, In : Plant and Soil. 291, 1-2, p. 155-165 11 p.

Research output: Contribution to journalArticle

Pinus muricata
Rhizopogon
symbiosis
soil moisture
soil water
1 Citation (Scopus)

Mycorrhizas take root at the Ecological Society of America

Kennedy, P. & Bruns, T., Dec 1 2007, In : New Phytologist. 176, 4, p. 745-748 4 p.

Research output: Contribution to journalArticle

Mycorrhizae
Biological Models
Plant Roots
interspecific interaction
mycorrhiza
14 Citations (Scopus)

Nickel hyperaccumulation as an anti-herbivore trait: Considering the role of tolerance to damage

Palomino, M., Kennedy, P. G. & Simms, E. L., Apr 1 2007, In : Plant and Soil. 293, 1-2, p. 189-195 7 p.

Research output: Contribution to journalArticle

hyperaccumulation
nickel
herbivore
herbivores
tolerance
72 Citations (Scopus)

Supply-side ecology in mangroves: Do propagule dispersal and seedling establishment explain forest structure?

Sousa, W. P., Kennedy, P. G., Mitchell, B. J. & Ordóñez L, B. M., Feb 1 2007, In : Ecological Monographs. 77, 1, p. 53-76 24 p.

Research output: Contribution to journalArticle

propagule
seedling establishment
sorting
mangrove
ecology
2008
180 Citations (Scopus)

Fungal community ecology: A hybrid beast with a molecular master

Peay, K. G., Kennedy, P. G. & Bruns, T. D., Oct 1 2008, In : BioScience. 58, 9, p. 799-810 12 p.

Research output: Contribution to journalReview article

community ecology
fungal communities
Ecology
Fungi
fungi
129 Citations (Scopus)

Preserving accuracy in GenBank

Bruns, T. D., Blackwell, M., Edwards, I., Taylor, A. F. S., Horton, T., Zhang, N., Kõljalg, U., May, G., Kuyper, T. W., Bever, J. D., Gilbert, G., Taylor, J. W., DeSantis, T. Z., Pringle, A., Borneman, J., Thorn, G., Berbee, M., Mueller, G. M., Andersen, G. L., Vellinga, E. C. & 236 others, Branco, S., Anderson, I., Dickie, I. A., Avis, P., Timonen, S., Kjøller, R., Lodge, D. J., Bateman, R. M., Purvis, A., Crous, P. W., Hawkes, C., Barraclough, T., Burt, A., Nilsson, R. H., Larsson, K. H., Alexander, I., Moncalvo, J. M., Berube, J., Spatafora, J., Thorsten Lumbsch, H., Blair, J. E., Suh, S. O., Pfister, D. H., Binder, M., Boehm, E. W., Kohn, L., Mata, J. L., Dyer, P., Sung, G. H., Dentinger, B., Simmons, E. G., Baird, R. E., Volk, T. J., Perry, B. A., Kerrigan, R. W., Campbell, J., Rajesh, J., Reynolds, D. R., Geiser, D., Humber, R. A., Hausmann, N., Szaro, T., Stajich, J., Gathman, A., Peay, K. G., Henkel, T., Robinson, C. H., Pukkila, P. J., Nguyen, N. H., Villalta, C., Kennedy, P., Bergemann, S., Catherine Aime, M., Kauff, F., Porras-Alfaro, A., Gueidan, C., Beck, A., Andersen, B., Marek, S., Crouch, J. A., Kerrigan, J., Beagle Ristaino, J., Hodge, K. T., Kuldau, G., Samuels, G. J., Raja, H. A., Voglmayr, H., Gardes, M., Janos, D. P., Rogers, J. D., Cannon, P., Woolfolk, S. W., Kistler, H. C., Castellano, M. A., Maldonado-Ramírez, S. L., Kirk, P. M., Farrar, J. J., Osmundson, T., Currah, R. S., Vujanovic, V., Chen, W., Korf, R. P., Atallah, Z. K., Harrison, K. J., Guarro, J., Bates, S. T., Enrico Bonello, P., Bridge, P., Schell, W., Rossi, W., Stenlid, J., Frisvad, J. C., Miller, R. M., Baker, S. E., Hallen, H. E., Janso, J. E., Wilson, A. W., Conway, K. E., Egerton-Warburton, L., Wang, Z., Eastburn, D., Hong Ho, W. W., Kroken, S., Stadler, M., Turgeon, G., Lichtwardt, R. W., Stewart, E. L., Wedin, M., Li, D. W., Uchida, J. Y., Jumpponen, A., Deckert, R. J., Beker, H. J., Rogers, S. O., Xu, J., Johnston, P., Shoemaker, R. A., Liu, M., Marques, G., Summerell, B., Sokolski, S., Thrane, U., Widden, P., Bruhn, J. N., Bianchinotti, V., Tuthill, D., Baroni, T. J., Barron, G., Hosaka, K., Jewell, K., Piepenbring, M., Sullivan, R., Griffith, G. W., Bradley, S. G., Aoki, T., Yoder, W. T., Ju, Y. M., Berch, S. M., Trappe, M., Duan, W., Bonito, G., Taber, R. A., Coelho, G., Bills, G., Ganley, A., Agerer, R., Nagy, L., Roy, B. A., Læssøe, T., Hallenberg, N., Tichy, H. V., Stalpers, J., Langer, E., Scholler, M., Krueger, D., Pacioni, G., Pöder, R., Pennanen, T., Capelari, M., Nakasone, K., Tewari, J. P., Miller, A. N., Decock, C., Huhndorf, S., Wach, M., Vishniac, H. S., Yohalem, D. S., Smith, M. E., Glenn, A. E., Spiering, M., Lindner, D. L., Schoch, C., Redhead, S. A., Ivors, K., Jeffers, S. N., Geml, J., Okafor, F., Spiegel, F. W., Dewsbury, D., Carroll, J., Porter, T. M., Pashley, C., Carpenter, S. E., Abad, G., Voigt, K., Arenz, B., Methven, A. S., Schechter, S., Vance, P., Mahoney, D., Kang, S., Rheeder, J. P., Mehl, J., Greif, M., Ndzi Ngala, G., Ammirati, J., Kawasaki, M., Gwo-Fang, Y., Matsumoto, T., Smith, D., Koenig, G., Luoma, D., May, T., Leonardi, M., Sigler, L., Taylor, D. L., Gibson, C., Sharpton, T., Hawksworth, D. L., Carmine Dianese, J., Trudell, S. A., Paulus, B., Padamsee, M., Callac, P., Lima, N., White, M., Barreau, C., Juncai, M. A., Buyck, B., Rabeler, R. K., Liles, M. R., Estes, D., Carter, R., Herr, J. M., Chandler, G., Kerekes, J., Cruse-Sanders, J., Galán Márquez, R., Horak, E., Fitzsimons, M., Döring, H., Yao, S., Hynson, N., Ryberg, M., Arnold, A. E. & Hughes, K., Mar 21 2008, In : Science. 319, 5870, 1 p.

Research output: Contribution to journalLetter

2009
7 Citations (Scopus)

Individuals, populations, communities and function: The growing field of ectomycorrhizal ecology

Bruns, T. D. & Kennedy, P. G., Apr 1 2009, In : New Phytologist. 182, 1, p. 12-14 3 p.

Research output: Contribution to journalComment/debate

Research Peer Review
Mycorrhizae
ectomycorrhizae
Population Dynamics
Ecology
126 Citations (Scopus)

Root tip competition among ectomycorrhizal fungi: Are priority effects a rule or an exception?

Kennedy, P. G., Peay, K. G. & Bruns, T. D., Aug 1 2009, In : Ecology. 90, 8, p. 2098-2107 10 p.

Research output: Contribution to journalArticle

root competition
root tips
root systems
Rhizopogon
fungus
2010
26 Citations (Scopus)

A molecular and phylogenetic analysis of the structure and specificity of Alnus rubra ectomycorrhizal assemblages

Kennedy, P. G. & Hill, L. T., Aug 1 2010, In : Fungal Ecology. 3, 3, p. 195-204 10 p.

Research output: Contribution to journalArticle

Alnus rubra
Alnus
Tomentella
phylogenetics
Alpova
99 Citations (Scopus)
Fungal Structures
fungal communities
interspecific competition
community structure
Fungi
7 Citations (Scopus)

Frankia and Alnus rubra canopy roots: An assessment of genetic diversity, propagule availability, and effects on soil nitrogen

Kennedy, P. G., Schouboe, J. L., Rogers, R. H., Weber, M. G. & Nadkarni, N. M., Jan 1 2010, In : Microbial Ecology. 59, 2, p. 214-220 7 p.

Research output: Contribution to journalArticle

Alnus rubra
Frankia
propagule
soil nitrogen
forest floor
10 Citations (Scopus)

Frankia bacteria in Alnus rubra forests: Genetic diversity and determinants of assemblage structure

Kennedy, P. G., Weber, M. G. & Bluhm, A. A., Jun 7 2010, In : Plant and Soil. 335, 1, p. 479-492 14 p.

Research output: Contribution to journalArticle

forest genetics
Alnus rubra
Frankia
genotype
genetic variation
137 Citations (Scopus)

Potential link between plant and fungal distributions in a dipterocarp rainforest: Community and phylogenetic structure of tropical ectomycorrhizal fungi across a plant and soil ecotone

Peay, K. G., Kennedy, P. G., Davies, S. J., Tan, S. & Bruns, T. D., Jan 1 2010, In : New Phytologist. 185, 2, p. 529-542 14 p.

Research output: Contribution to journalArticle

Plant Dispersal
Dipterocarpaceae
ecotones
rain forests
Fungi
2011
28 Citations (Scopus)

Colonization-competition tradeoffs as a mechanism driving successional dynamics in ectomycorrhizal fungal communities

Kennedy, P. G., Higgins, L. M., Rogers, R. H. & Weber, M. G., Sep 19 2011, In : PLoS One. 6, 9, e25126.

Research output: Contribution to journalArticle

Meristem
fungal communities
Spores
root tips
Pinus muricata
51 Citations (Scopus)

Ectomycorrhizal fungi in Mexican Alnus forests support the host co-migration hypothesis and continental-scale patterns in phylogeography

Kennedy, P. G., Garibay-Orijel, R., Higgins, L. M. & Angeles-Arguiz, R., Aug 1 2011, In : Mycorrhiza. 21, 6, p. 559-568 10 p.

Research output: Contribution to journalArticle

Alnus
Phylogeography
phylogeography
Fungi
fungus
4 Citations (Scopus)
Alnus viridis
Alnus rubra
Frankia
genotype
bioassay
91 Citations (Scopus)

Rethinking ectomycorrhizal succession: Are root density and hyphal exploration types drivers of spatial and temporal zonation?

Peay, K. G., Kennedy, P. G. & Bruns, T. D., Jun 1 2011, In : Fungal Ecology. 4, 3, p. 233-240 8 p.

Research output: Contribution to journalArticle

zonation
forest edge
fungal communities
edge effects
soil profiles
2012
24 Citations (Scopus)

Arbutus menziesii (Ericaceae) facilitates regeneration dynamics in mixed evergreen forests by promoting mycorrhizal fungal diversity and host connectivity

Kennedy, P. G., Smith, D. P., Horton, T. R. & Molina, R. J., Oct 1 2012, In : American journal of botany. 99, 10, p. 1691-1701 11 p.

Research output: Contribution to journalArticle

Arbutus menziesii
Ericaceae
evergreen forest
mixed forest
connectivity
27 Citations (Scopus)

Scaling up: Examining the macroecology of ectomycorrhizal fungi

Kennedy, P. G., Matheny, P. B., Ryberg, K. M., Henkel, T. W., Uehling, J. K. & Smith, M. E., Sep 1 2012, In : Molecular ecology. 21, 17, p. 4151-4154 4 p.

Research output: Contribution to journalReview article

macroecology
fungal communities
Fungi
fungus
ecology
8 Citations (Scopus)
Frankia
Alnus
genotype
Mexico
bacterium
2013
95 Citations (Scopus)

Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale

Põlme, S., Bahram, M., Yamanaka, T., Nara, K., Dai, Y. C., Grebenc, T., Kraigher, H., Toivonen, M., Wang, P. H., Matsuda, Y., Naadel, T., Kennedy, P. G., Kõljalg, U. & Tedersoo, L., Jun 1 2013, In : New Phytologist. 198, 4, p. 1239-1249 11 p.

Research output: Contribution to journalArticle

Alnus
Fungi
biogeography
fungi
phylogeny
30 Citations (Scopus)
Alnus
Betula
generalist
bioassay
fungus
2014
5 Citations (Scopus)

A molecular and morphological analysis of the genus Rhizopogon subgenus Villosuli section Villosuli as a preface to ecological monitoring

Bubriski, R. & Kennedy, P. G., Jan 1 2014, In : Mycologia. 106, 2, p. 353-361 9 p.

Research output: Contribution to journalArticle

Rhizopogon
Spores
spores
monitoring
spore
10 Citations (Scopus)

Missing checkerboards? An absence of competitive signal in Alnus-associated ectomycorrhizal fungal communities

Kennedy, P. G., Nguyen, N. H., Cohen, H. & Peay, K., Jan 1 2014, In : PeerJ. 2014, 12, e686.

Research output: Contribution to journalArticle

Alnus
fungal communities
Fungi
interspecific competition
DNA sequences
28 Citations (Scopus)

Testing the link between community structure and function for ectomycorrhizal fungi involved in a global tripartite symbiosis

Walker, J. K. M., Cohen, H., Higgins, L. M. & Kennedy, P. G., Apr 1 2014, In : New Phytologist. 202, 1, p. 287-296 10 p.

Research output: Contribution to journalArticle

Alnus
Symbiosis
symbiosis
community structure
Fungi
15 Citations (Scopus)

Unlocking environmental keys to host specificity: Differential tolerance of acidity and nitrate byAlnus-associated ectomycorrhizal fungi

Huggins, J. A., Talbot, J., Gardes, M. & Kennedy, P. G., Jan 1 2014, In : Fungal Ecology. 12, C, p. 52-61 10 p.

Research output: Contribution to journalArticle

Alnus
host specificity
acidity
tolerance
nitrates
2015
12 Citations (Scopus)

Effort versus reward Preparing samples for fungal community characterization in high-throughput sequencing surveys of soils

Song, Z., Schlatter, D., Kennedy, P., Kinkel, L. L., Kistler, H. C., Nguyen, N. & Bates, S. T., May 14 2015, In : PloS one. 10, 5, e0127234.

Research output: Contribution to journalArticle

fungal communities
soil surveys
Reward
Ecosystem
Soil
22 Citations (Scopus)

Moving beyond the black-box: Fungal traits, community structure, and carbon sequestration in forest soils

Fernandez, C. W. & Kennedy, P. G., Mar 1 2015, In : New Phytologist. 205, 4, p. 1378-1380 3 p.

Research output: Contribution to journalComment/debate

Carbon Sequestration
Mycorrhizae
Carbon Cycle
taiga
mycorrhizae
142 Citations (Scopus)

Parsing ecological signal from noise in next generation amplicon sequencing

Nguyen, N. H., Smith, D., Peay, K. & Kennedy, P. G., Mar 1 2015, In : New Phytologist. 205, 4, p. 1389-1393 5 p.

Research output: Contribution to journalLetter

Ecological and Environmental Phenomena
DNA Contamination
High-Throughput Nucleotide Sequencing
Signal-To-Noise Ratio
Ecology
21 Citations (Scopus)

Testing the co-invasion hypothesis: Ectomycorrhizal fungal communities on Alnus glutinosa and Salix fragilis in New Zealand

Bogar, L. M., Dickie, I. A. & Kennedy, P. G., Mar 1 2015, In : Diversity and Distributions. 21, 3, p. 268-278 11 p.

Research output: Contribution to journalArticle

Salix fragilis
Alnus glutinosa
fungal communities
fungus
Alnus
1 Citation (Scopus)

Twenty-first century mycology: A diverse, collaborative, and highly relevant science

Kennedy, P. & Stajich, J., Jan 1 2015, In : New Phytologist. 205, 1, p. 23-26 4 p.

Research output: Contribution to journalArticle

21st Century History
Mycology
Host-Pathogen Interactions
mycology
host-pathogen relationships
2016
14 Citations (Scopus)

Competitive avoidance not edaphic specialization drives vertical niche partitioning among sister species of ectomycorrhizal fungi

Mujic, A. B., Durall, D. M., Spatafora, J. W. & Kennedy, P. G., Feb 1 2016, In : New Phytologist. 209, 3, p. 1174-1183 10 p.

Research output: Contribution to journalArticle

niches
Fungi
Soil
Rhizopogon
fungi
124 Citations (Scopus)

Dimensions of biodiversity in the Earth mycobiome

Peay, K. G., Kennedy, P. G. & Talbot, J. M., Jun 14 2016, In : Nature Reviews Microbiology. 14, 7, p. 434-447 14 p.

Research output: Contribution to journalReview article

Biodiversity
Animal Structures
Plant Structures
DNA Sequence Analysis
Ecosystem
28 Citations (Scopus)

Ectomycorrhizal fungal diversity and saprotrophic fungal diversity are linked to different tree community attributes in a field-based tree experiment

Nguyen, N. H., Williams, L. J., Vincent, J. B., Stefanski, A., Cavender-Bares, J., Messier, C., Paquette, A., Gravel, D., Reich, P. B. & Kennedy, P. G., Aug 1 2016, In : Molecular Ecology. 25, 16, p. 4032-4046 15 p.

Research output: Contribution to journalArticle

species diversity
phylogenetics
fungal communities
gymnosperm
experiment
8 Citations (Scopus)

Ectomycorrhizal fungal protein degradation ability predicted by soil organic nitrogen availability

Rineau, F., Stas, J., Nguyen, N. H., Kuyper, T. W., Carleer, R., Vangronsveld, J., Colpaert, J. V. & Kennedy, P. G., Jan 1 2016, In : Applied and environmental microbiology. 82, 5, p. 1391-1400 10 p.

Research output: Contribution to journalArticle

fungal proteins
Fungal Proteins
organic nitrogen
protein degradation
Proteolysis
402 Citations (Scopus)

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

Nguyen, N. H., Song, Z., Bates, S. T., Branco, S., Tedersoo, L., Menke, J., Schilling, J. S. & Kennedy, P. G., Apr 1 2016, In : Fungal Ecology. 20, p. 241-248 8 p.

Research output: Contribution to journalArticle

fungal communities
guild
grassland soils
fungus
forest soils
12 Citations (Scopus)

Phylogenetic assessment of global Suillus ITS sequences supports morphologically defined species and reveals synonymous and undescribed taxa

Nguyen, N. H., Vellinga, E. C., Bruns, T. D. & Kennedy, P. G., Nov 1 2016, In : Mycologia. 108, 6, p. 1216-1228 13 p.

Research output: Contribution to journalArticle

Suillus
North America
internal transcribed spacers
Names
Northern Asia
82 Citations (Scopus)

Revisiting the 'Gadgil effect': Do interguild fungal interactions control carbon cycling in forest soils?

Fernandez, C. W. & Kennedy, P. G., Mar 1 2016, In : New Phytologist. 209, 4, p. 1382-1394 13 p.

Research output: Contribution to journalArticle

forest soils
soil organic matter
Soil
Carbon
trenching
2017
3 Citations (Scopus)

Colonization by nitrogen-fixing Frankia bacteria causes short-term increases in herbivore susceptibility in red alder (Alnus rubra) seedlings

Ballhorn, D. J., Elias, J. D., Balkan, M. A., Fordyce, R. F. & Kennedy, P. G., Jun 1 2017, In : Oecologia. 184, 2, p. 497-506 10 p.

Research output: Contribution to journalArticle

Alnus rubra
Frankia
herbivore
herbivores
colonization
24 Citations (Scopus)

Ectomycorrhizal fungal response to warming is linked to poor host performance at the boreal-temperate ecotone

Fernandez, C. W., Nguyen, N. H., Stefanski, A., Han, Y., Hobbie, S. E., Montgomery, R. A., Reich, P. B. & Kennedy, P. G., Apr 1 2017, In : Global change biology. 23, 4, p. 1598-1609 12 p.

Research output: Contribution to journalArticle

ecotone
Fungi
warming
Climate change
Soils