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Research Output 1998 2019

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Article
2019

ATP/ADP modulates gp16-pRNA conformational change in the Phi29 DNA packaging motor

Cai, R., Price, I. R., Ding, F., Wu, F., Chen, T., Zhang, Y., Liu, G., Jardine, P. J., Lu, C. & Ke, A., Oct 10 2019, In : Nucleic acids research. 47, 18, p. 9818-9828 11 p.

Research output: Contribution to journalArticle

Open Access
DNA Packaging
Adenosine Diphosphate
Product Packaging
Adenosine Triphosphate
RNA
2018
3 Citations (Scopus)

Molecular switch-like regulation enables global subunit coordination in a viral ring ATPase

Tafoya, S., Liu, S., Castillo, J. P., Atz, R., Morais, M. C., Grimes, S., Jardine, P. J. & Bustamante, C., Jul 31 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 31, p. 7961-7966 6 p.

Research output: Contribution to journalArticle

Open Access
Adenosine Triphosphatases
Hydrolysis
Fingers
Arginine
Adenosine Triphosphate
2017
2 Citations (Scopus)

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection

Keller, N., Berndsen, Z. T., Jardine, P. J. & Smith, D. E., May 1 2017, In : Physical review. E. 95, 5-1, 1 p.

Research output: Contribution to journalArticle

Open Access
Packaging
packaging
ejection
deoxyribonucleic acid
spools
6 Citations (Scopus)

Synthesis of Infectious Bacteriophages in an E. coli-based Cell-free Expression System

Rustad, M., Eastlund, A., Marshall, R., Jardine, P. J. & Noireaux, V., Aug 17 2017, In : Journal of visualized experiments : JoVE. 126

Research output: Contribution to journalArticle

Open Access
Bacteriophages
Cell-Free System
Escherichia coli
Synthetic Biology
Genes
13 Citations (Scopus)

The Interprofessional Collaborative Competency Attainment Survey (ICCAS): A replication validation study

Schmitz, C. C., Radosevich, D. M., Jardine, P., MacDonald, C. J., Trumpower, D. & Archibald, D., Jan 2 2017, In : Journal of interprofessional care. 31, 1, p. 28-34 7 p.

Research output: Contribution to journalArticle

Validation Studies
Health Occupations
Licensure
Principal Component Analysis
Reproducibility of Results
2016
1 Citation (Scopus)
Health Occupations
Health
Students
Occupational therapy
Dentistry
16 Citations (Scopus)

Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging

Keller, N., Grimes, S., Jardine, P. J. & Smith, D. E., Aug 2 2016, In : Nature Physics. 12, 8, p. 757-761 5 p.

Research output: Contribution to journalArticle

jamming
packaging
deoxyribonucleic acid
histories
molecules
26 Citations (Scopus)

Structural and Molecular Basis for Coordination in a Viral DNA Packaging Motor

Mao, H., Saha, M., Reyes-Aldrete, E., Sherman, M. B., Woodson, M., Atz, R., Grimes, S., Jardine, P. J. & Morais, M. C., Mar 1 2016, In : Cell reports. 14, 8, p. 2017-2029 13 p.

Research output: Contribution to journalArticle

DNA Packaging
Virus Assembly
Viral DNA
Packaging
Adenosine Triphosphatases
2015
3 Citations (Scopus)

An RNA domain imparts specificity and selectivity to a viral DNA packaging motor

Zhao, W., Jardine, P. J. & Grimes, S., Jan 1 2015, In : Journal of virology. 89, 24, p. 12457-12466 10 p.

Research output: Contribution to journalArticle

DNA Packaging
Virus Assembly
Viral DNA
RNA
bacteriophages
2014
70 Citations (Scopus)

A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills

Liu, S., Chistol, G., Hetherington, C. L., Tafoya, S., Aathavan, K., Schnitzbauer, J., Grimes, S., Jardine, P. J. & Bustamante, C., Apr 24 2014, In : Cell. 157, 3, p. 702-713 12 p.

Research output: Contribution to journalArticle

Virus Assembly
Capsid
Packaging
DNA Packaging
DNA
19 Citations (Scopus)

Insights into the structure and assembly of the bacteriophage φ29 double-stranded DNA packaging motor

Cao, S., Saha, M., Zhao, W., Jardine, P. J., Zhang, W., Grimes, S. & Morais, M. C., Apr 2014, In : Journal of virology. 88, 8, p. 3986-3996 11 p.

Research output: Contribution to journalArticle

Product Packaging
Bacteriophages
packaging
RNA
bacteriophages
53 Citations (Scopus)

Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging

Berndsen, Z. T., Keller, N., Grimes, S., Jardine, P. J. & Smith, D. E., Jun 10 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 23, p. 8345-8350 6 p.

Research output: Contribution to journalArticle

Virus Assembly
Product Packaging
DNA
DNA Packaging
Polymers
30 Citations (Scopus)

Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29

Keller, N., Deltoro, D., Grimes, S., Jardine, P. J. & Smith, D. E., Jun 17 2014, In : Physical Review Letters. 112, 24, 248101.

Research output: Contribution to journalArticle

packaging
deoxyribonucleic acid
interactions
stalling
induction
2012
6 Citations (Scopus)

A three-helix junction is the interface between two functional domains of prohead RNA in φ29 DNA packaging

Zhao, W., Saha, M., Ke, A., Morais, M. C., Jardine, P. J. & Grimes, S., Nov 1 2012, In : Journal of virology. 86, 21, p. 11625-11632 8 p.

Research output: Contribution to journalArticle

DNA Packaging
RNA
Product Packaging
Bacteriophages
Adenosine Triphosphatases
61 Citations (Scopus)

Genome replication, synthesis, and assembly of the bacteriophage T7 in a single cell-Free reaction

Shin, J., Jardine, P. & Noireaux, V., Sep 21 2012, In : ACS Synthetic Biology. 1, 9, p. 408-413 6 p.

Research output: Contribution to journalArticle

Bacteriophage T7
Bacteriophages
DNA Replication
DNA
Genes
63 Citations (Scopus)

High degree of coordination and division of labor among subunits in a homomeric ring ATPase

Chistol, G., Liu, S., Hetherington, C. L., Moffitt, J. R., Grimes, S., Jardine, P. J. & Bustamante, C., Nov 21 2012, In : Cell. 151, 5, p. 1017-1028 12 p.

Research output: Contribution to journalArticle

Adenosine Triphosphatases
Adenosine Triphosphate
Personnel
Optical Tweezers
Optical tweezers
12 Citations (Scopus)

Structure of the RNA claw of the DNA packaging motor of bacteriophage φ29

Harjes, E., Kitamura, A., Zhao, W., Morais, M. C., Jardine, P. J., Grimes, S. & Matsuo, H., Oct 1 2012, In : Nucleic acids research. 40, 19, p. 9953-9963 11 p.

Research output: Contribution to journalArticle

DNA Packaging
Hoof and Claw
Bacteriophages
Product Packaging
RNA
2011
37 Citations (Scopus)

Role of φ29 connector channel loops in late-stage DNA packaging

Grimes, S., Ma, S., Gao, J., Atz, R. & Jardine, P. J., Jul 1 2011, In : Journal of Molecular Biology. 410, 1, p. 50-59 10 p.

Research output: Contribution to journalArticle

DNA Packaging
Product Packaging
DNA
Bacteriophages
Bacillus Phages
44 Citations (Scopus)

Structure and assembly of the essential RNA ring component of a viral DNA packaging motor

Ding, F., Lu, C., Zhao, W., Rajashankar, K. R., Anderson, D. L., Jardine, P. J., Grimes, S. & Ke, A., May 3 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 18, p. 7357-7362 6 p.

Research output: Contribution to journalArticle

DNA Packaging
Virus Assembly
Viral DNA
RNA
Protein Subunits
2009
191 Citations (Scopus)

Intersubunit coordination in a homomeric ring ATPase

Moffitt, J. R., Chemla, Y. R., Aathavan, K., Grimes, S., Jardine, P. J., Anderson, D. L. & Bustamante, C., Jan 22 2009, In : Nature. 457, 7228, p. 446-450 5 p.

Research output: Contribution to journalArticle

Base Pairing
Adenosine Triphosphatases
Optical Tweezers
DNA Packaging
Chromosome Segregation
76 Citations (Scopus)

Substrate interactions and promiscuity in a viral DNA packaging motor

Aathavan, K., Politzer, A. T., Kaplan, A., Moffitt, J. R., Chemla, Y. R., Grimes, S., Jardine, P. J., Anderson, D. L. & Bustamante, C., Oct 1 2009, In : Nature. 461, 7264, p. 669-673 5 p.

Research output: Contribution to journalArticle

DNA Packaging
Virus Assembly
Viral DNA
DNA
Product Packaging
2008
15 Citations (Scopus)

Analysis of intermolecular base pair formation of prohead RNA of the phage ø29 DNA packaging motor using NMR spectroscopy

Kitamura, A., Jardine, P. J., Anderson, D. L., Grimes, S. & Matsuo, H., Feb 1 2008, In : Nucleic acids research. 36, 3, p. 839-848 10 p.

Research output: Contribution to journalArticle

RNA Phages
DNA Packaging
Base Pairing
Magnetic Resonance Spectroscopy
RNA
78 Citations (Scopus)

DNA Poised for Release in Bacteriophage ø29

Tang, J., Olson, N., Jardine, P. J., Grimes, S., Anderson, D. L. & Baker, T. S., Jun 11 2008, In : Structure. 16, 6, p. 935-943 9 p.

Research output: Contribution to journalArticle

Bacteriophages
DNA
Head
Virus Assembly
Proteins
4 Citations (Scopus)

Hydrogen/deuterium exchange on protein solutions containing nucleic acids: Utility of protamine sulfate

Poliakov, A., Jardine, P. & Prevelige, P. E., Aug 1 2008, In : Rapid Communications in Mass Spectrometry. 22, 16, p. 2423-2428 6 p.

Research output: Contribution to journalArticle

Protamines
Deuterium
Nucleic Acids
Hydrogen
Proteins
100 Citations (Scopus)

Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage φ29

Rickgauer, J. P., Fuller, D. N., Grimes, S., Jardine, P. J., Anderson, D. L. & Smith, D. E., Jan 1 2008, In : Biophysical journal. 94, 1, p. 159-167 9 p.

Research output: Contribution to journalArticle

DNA Packaging
Virus Assembly
Viral DNA
Bacteriophages
Product Packaging
21 Citations (Scopus)

Role of the CCA Bulge of Prohead RNA of Bacteriophage ø29 in DNA Packaging

Zhao, W., Morais, M. C., Anderson, D. L., Jardine, P. J. & Grimes, S., Nov 14 2008, In : Journal of Molecular Biology. 383, 3, p. 520-528 9 p.

Research output: Contribution to journalArticle

RNA Phages
DNA Packaging
RNA
Product Packaging
DNA
65 Citations (Scopus)

Three-dimensional architecture of the bacteriophage φ29 packaged genome and elucidation of its packaging process

Comolli, L. R., Spakowitz, A. J., Siegerist, C. E., Jardine, P. J., Grimes, S., Anderson, D. L., Bustamante, C. & Downing, K. H., Feb 20 2008, In : Virology. 371, 2, p. 267-277 11 p.

Research output: Contribution to journalArticle

DNA Packaging
Product Packaging
Bacteriophages
Genome
Capsid
2007
107 Citations (Scopus)

Experimental test of connector rotation during DNA packaging into bacteriophage φ29 capsids

Hugel, T., Michaelis, J., Hetherington, C. L., Jardine, P. J., Grimes, S., Walter, J. M., Falk, W., Anderson, D. L. & Bustamante, C., Mar 1 2007, In : PLoS biology. 5, 3, p. 558-567 10 p.

Research output: Contribution to journalArticle

DNA Packaging
Bacteriophages
capsid
Capsid
bacteriophages
113 Citations (Scopus)

Ionic effects on viral DNA packaging and portal motor function in bacteriophage φ29

Fuller, D. N., Rickgauer, J. P., Jardine, P. J., Grimes, S., Anderson, D. L. & Smith, D. E., Jul 3 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 27, p. 11245-11250 6 p.

Research output: Contribution to journalArticle

DNA Packaging
Virus Assembly
Viral DNA
Bacteriophages
Static Electricity
2006
89 Citations (Scopus)

Structural changes of bacteriophage φ29 upon DNA packaging and release

Xiang, Y., Morais, M. C., Battisti, A. J., Grimes, S., Jardine, P. J., Anderson, D. L. & Rossmann, M. G., Nov 1 2006, In : EMBO Journal. 25, 21, p. 5229-5239 11 p.

Research output: Contribution to journalArticle

DNA Packaging
Bacteriophages
Packaging
Head
Viruses
2005
205 Citations (Scopus)

Mechanism of force generation of a viral DNA packaging motor

Chemla, Y. R., Aathavan, K., Michaelis, J., Grimes, S. N., Jardine, P. J., Anderson, D. L. & Bustamante, C., Sep 9 2005, In : Cell. 122, 5, p. 683-692 10 p.

Research output: Contribution to journalArticle

DNA Packaging
Virus Assembly
Viral DNA
Packaging
Adenosine Triphosphatases
2002
78 Citations (Scopus)

Bacteriophage φ29 DNA packaging

Grimes, S., Jardine, P. J. & Anderson, D., 2002, In : Advances in Virus Research. 58

Research output: Contribution to journalArticle

Bacillus Phages
DNA Packaging
Virus Assembly
Viral DNA
Bacteriophages
2001
71 Citations (Scopus)

Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage φ29

Morais, M. C., Tao, Y., Olson, N. H., Grimes, S., Jardine, P. J., Anderson, D. L., Baker, T. S. & Rossmann, M. G., Jan 1 2001, In : Journal of Structural Biology. 135, 1, p. 38-46 9 p.

Research output: Contribution to journalArticle

Cryoelectron Microscopy
Computer-Assisted Image Processing
Bacteriophages
Phosmet
DNA Packaging
71 Citations (Scopus)

Structure determination of the head-tail connector of bacteriophage φ29

Simpson, A. A., Leiman, P. G., Tao, Y., He, Y., Badasso, M. O., Jardine, P. J., Anderson, D. L. & Rossmann, M. G., Oct 3 2001, In : Acta Crystallographica Section D: Biological Crystallography. 57, 9, p. 1260-1269 10 p.

Research output: Contribution to journalArticle

Bacteriophages
Head
Cryoelectron Microscopy
DNA
DNA Packaging
2000
403 Citations (Scopus)

Structure of the bacteriophage φ29 DNA packaging motor

Simpson, A. A., Tao, Y., Leiman, P. G., Badasso, M. O., He, Y., Jardine, P. J., Olson, N. H., Morais, M. C., Grimes, S., Anderson, D. L., Baker, T. S. & Rossmann, M. G., Dec 7 2000, In : Nature. 408, 6813, p. 745-750 6 p.

Research output: Contribution to journalArticle

DNA Packaging
Bacteriophages
DNA
Capsid
Adenosine Triphosphatases
1998
34 Citations (Scopus)

Capsid expansion follows the initiation of DNA packaging in bacteriophage T4

Jardine, P. J. & Coombs, D. H., Dec 4 1998, In : Journal of Molecular Biology. 284, 3, p. 661-672 12 p.

Research output: Contribution to journalArticle

DNA Packaging
Bacteriophage T4
Capsid
Product Packaging
DNA
14 Citations (Scopus)

The bacteriophage T4 DNA packaging apparatus targets the unexpanded prohead

Jardine, P. J., McCormick, M. C., Lutze-Wallace, C. & Coombs, D. H., Dec 4 1998, In : Journal of Molecular Biology. 284, 3, p. 647-659 13 p.

Research output: Contribution to journalArticle

DNA Packaging
Bacteriophage T4
Product Packaging
Capsid
Bacteriophage T3