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Research Output 2000 2019

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2019

Classifying cold-stress responses of inbred maize seedlings using RGB imaging

Enders, T., St. Dennis, S., Oakland, J., Callen, S. T., Gehan, M. A., Miller, N. D., Spalding, E. P., Springer, N. M. & Hirsch, C. D., Jan 1 2019, In : Plant Direct. 3, 1, e00104.

Research output: Contribution to journalArticle

Open Access
Cold-Shock Response
Seedlings
Zea mays
genotype
cold stress
2 Citations (Scopus)

Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development

Zhou, P., Hirsch, C. N., Briggs, S. P. & Springer, N. M., Mar 4 2019, In : Molecular Plant. 12, 3, p. 410-425 16 p.

Research output: Contribution to journalArticle

Zea mays
Gene Expression
gene expression
corn
Genes

Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize

Anderson, S. N., Stitzer, M. C., Zhou, P., Ross-Ibarra, J., Hirsch, C. D. & Springer, N. M., Nov 5 2019, In : G3 (Bethesda, Md.). 9, 11, p. 3673-3682 10 p.

Research output: Contribution to journalArticle

Open Access
DNA Transposable Elements
Zea mays
Genotype
Transcriptome
Transcriptional Silencer Elements

Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean

Wang, J., Li, X., Do Kim, K., Scanlon, M. J., Jackson, S. A., Springer, N. M. & Yu, J., Apr 25 2019, In : Genome biology. 20, 1, 74.

Research output: Contribution to journalArticle

Open Access
domestication
Soybeans
Zea mays
soybean
Nucleotides

Hybrid decay: A transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize

Xue, W., Anderson, S. N., Wang, X., Yang, L., Crisp, P. A., Li, Q., Noshay, J., Albert, P. S., Birchler, J. A., Bilinski, P., Stitzer, M. C., Ross-Ibarra, J., Flint-Garcia, S., Chen, X., Springer, N. M. & Doebley, J. F., Jan 1 2019, In : Genetics. 213, 1, p. 143-160 18 p.

Research output: Contribution to journalArticle

Open Access
Epigenomics
Zea mays
tetrachloroisophthalonitrile
Population
DNA Transposable Elements

Idea factory: The maize genomes to fields initiative

Lawrence-Dill, C. J., Schnable, P. S. & Springer, N. M., Jul 1 2019, In : Crop Science. 59, 4, p. 1406-1410 5 p.

Research output: Contribution to journalArticle

Open Access
research support
research and development
factories
education
researchers

Identification of the expressome by machine learning on omics data

Sartor, R. C., Noshay, J., Springer, N. M. & Briggs, S. P., Sep 3 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 36, p. 18119-18125 7 p.

Research output: Contribution to journalArticle

Open Access
Genes
Genome
DNA Methylation
Methylation
Histone Code
2 Citations (Scopus)

Maize Carbohydrate Partitioning Defective33 Encodes an MCTP Protein and Functions in Sucrose Export from Leaves

Tran, T. M., McCubbin, T. J., Bihmidine, S., Julius, B. T., Baker, R. F., Schauflinger, M., Weil, C., Springer, N., Chomet, P., Wagner, R., Woessner, J., Grote, K., Peevers, J., Slewinski, T. L. & Braun, D. M., Sep 2 2019, In : Molecular Plant. 12, 9, p. 1278-1293 16 p.

Research output: Contribution to journalArticle

Plasmodesmata
Zea mays
Sucrose
Carbohydrates
sucrose

Monitoring the interplay between transposable element families and DNA methylation in maize

Noshay, J. M., Anderson, S. N., Zhou, P., Ji, L., Ricci, W., Lu, Z., Stitzer, M. C., Crisp, P. A., Hirsch, C. N., Zhang, X., Schmitz, R. J. & Springer, N. M., Jan 1 2019, In : PLoS genetics. 15, 9, e1008291.

Research output: Contribution to journalArticle

Open Access
DNA Transposable Elements
methylation
DNA methylation
DNA Methylation
transposons
2 Citations (Scopus)

Transposable elements contribute to dynamic genome content in maize

Anderson, S. N., Stitzer, M. C., Brohammer, A. B., Zhou, P., Noshay, J. M., O'Connor, C. H., Hirsch, C. D., Ross-Ibarra, J., Hirsch, C. N. & Springer, N. M., Dec 1 2019, In : Plant Journal. 100, 5, p. 1052-1065 14 p.

Research output: Contribution to journalArticle

DNA Transposable Elements
transposons
Zea mays
Genome
genome
2018
9 Citations (Scopus)

Genotype-by-environment interactions affecting heterosis in maize

Li, Z., Coffey, L., Garfin, J., Miller, N. D., White, M. R., Spalding, E. P., De Leon, N., Kaeppler, S. M., Schnable, P. S., Springer, N. M. & Hirsch, C. N., Jan 2018, In : PloS one. 13, 1, e0191321.

Research output: Contribution to journalArticle

Hybrid Vigor
heterosis
Zea mays
Life cycle
Productivity
7 Citations (Scopus)

Heritable epigenomic changes to the maize methylome resulting from tissue culture

Han, Z., Crisp, P., Stelpflug, S., Kaeppler, S. M., Li, Q. & Springer, N. M., Aug 1 2018, In : Genetics. 209, 4, p. 983-995 13 p.

Research output: Contribution to journalArticle

DNA Methylation
Epigenomics
Zea mays
Genome
Bony Callus
2 Citations (Scopus)

Intragenic meiotic crossovers generate novel alleles with transgressive expression levels

Liu, S., Schnable, J. C., Ott, A., Yeh, C. T. E., Springer, N. M., Yu, J., Muehlbauer, G. J., Timmermans, M. C. P., Scanlon, M. J. & Schnable, P. S., Jan 1 2018, In : Molecular biology and evolution. 35, 11, p. 2762-2772 11 p.

Research output: Contribution to journalArticle

allele
Genetic Recombination
Alleles
alleles
intragenic recombination
3 Citations (Scopus)

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

Alkhalifah, N., Campbell, D. A., Falcon, C. M., Gardiner, J. M., Miller, N. D., Romay, M. C., Walls, R., Walton, R., Yeh, C. T., Bohn, M., Bubert, J., Buckler, E. S., Ciampitti, I., Flint-Garcia, S., Gore, M. A., Graham, C., Hirsch, C. N., Holland, J. B., Hooker, D., Kaeppler, S. & 24 others, Knoll, J., Lauter, N., Lee, E. C., Lorenz, A. J., Lynch, J. P., Moose, S. P., Murray, S. C., Nelson, R., Rocheford, T., Rodriguez, O., Schnable, J. C., Scully, B., Smith, M., Springer, N. M., Thomison, P., Tuinstra, M., Wisser, R. J., Xu, W., Ertl, D., Schnable, P. S., De Leon, N., Spalding, E. P., Edwards, J. & Lawrence-Dill, C. J., Jul 9 2018, In : BMC Research Notes. 11, 1, 452.

Research output: Contribution to journalArticle

Zea mays
Ear
Genes
Genotype
Genome
7 Citations (Scopus)

Subtle perturbations of the maize methylome reveal genes and transposons silenced by chromomethylase or RNA-directed DNA methylation pathways

Anderson, S. N., Zynda, G. J., Song, J., Han, Z., Vaughn, M. W., Li, Q. & Springer, N. M., Jun 1 2018, In : G3: Genes, Genomes, Genetics. 8, 6, p. 1921-1932 12 p.

Research output: Contribution to journalArticle

DNA Methylation
Zea mays
RNA
Genes
Methylation
11 Citations (Scopus)

The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines

Brohammer, A. B., Kono, T., Springer, N. M., McGaugh, S. E. & Hirsch, C. N., Jan 1 2018, In : Plant Journal. 93, 1, p. 131-141 11 p.

Research output: Contribution to journalArticle

inbred lines
Zea mays
fractionation
Genome
genome
26 Citations (Scopus)

The maize w22 genome provides a foundation for functional genomics and transposon biology

Springer, N. M., Anderson, S. N., Andorf, C. M., Ahern, K. R., Bai, F., Barad, O., Barbazuk, W. B., Bass, H. W., Baruch, K., Ben-Zvi, G., Buckler, E. S., Bukowski, R., Campbell, M. S., Cannon, E. K. S., Chomet, P., Kelly Dawe, R., Davenport, R., Dooner, H. K., Du, L. H., Du, C. & 34 others, Easterling, K. A., Gault, C., Guan, J. C., Hunter, C. T., Jander, G., Jiao, Y., Koch, K. E., Kol, G., Köllner, T. G., Kudo, T., Li, Q., Lu, F., Mayfield-Jones, D., Mei, W., McCarty, D. R., Noshay, J. M., Portwood, J. L., Ronen, G., Settles, A. M., Shem-Tov, D., Shi, J., Soifer, I., Stein, J. C., Stitzer, M. C., Suzuki, M., Vera, D. L., Vollbrecht, E., Vrebalov, J. T., Ware, D., Wei, S., Wimalanathan, K., Woodhouse, M. R., Xiong, W. & Brutnell, T. P., Sep 1 2018, In : Nature Genetics. 50, 9

Research output: Contribution to journalArticle

Genomics
Zea mays
Genome
Reverse Genetics
DNA Transposable Elements
2017
2 Citations (Scopus)

A comparative genomic hybridization approach to study gene copy number variations among chinese hamster cell lines

Vishwanathan, N., Bandyopadhyay, A., Fu, H. Y., Johnson, K. C., Springer, N. M. & Hu, W-S., Aug 1 2017, In : Biotechnology and Bioengineering. 114, 8, p. 1903-1908 6 p.

Research output: Contribution to journalArticle

Comparative Genomic Hybridization
Gene Dosage
Cricetulus
Genes
Cells
20 Citations (Scopus)

A comprehensive analysis of alternative splicing in paleopolyploid maize

Mei, W., Liu, S., Schnable, J. C., Yeh, C. T., Springer, N. M., Schnable, P. S. & Barbazuk, W. B., May 10 2017, In : Frontiers in Plant Science. 8, 694.

Research output: Contribution to journalArticle

alternative splicing
corn
genes
inbred lines
introns
17 Citations (Scopus)

Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

Oka, R., Zicola, J., Weber, B., Anderson, S. N., Hodgman, C., Gent, J. I., Wesselink, J. J., Springer, N. M., Hoefsloot, H. C. J., Turck, F. & Stam, M., Jul 21 2017, In : Genome biology. 18, 1, 137.

Research output: Contribution to journalArticle

Chromosome Mapping
Zea mays
Chromatin
chromatin
genome
16 Citations (Scopus)

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize

He, Y., Wang, M., Dukowic-Schulze, S., Zhou, A., Tiang, C. L., Shilo, S., Sidhu, G. K., Eichten, S., Bradbury, P., Springer, N. M., Buckler, E. S., Levy, A. A., Sun, Q., Pillardy, J., Kianian, P. M. A., Kianian, S. F., Chen, C. & Pawlowski, W. P., Nov 14 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 46, p. 12231-12236 6 p.

Research output: Contribution to journalArticle

Genetic Recombination
Zea mays
Eukaryota
Nucleosomes
DNA
200 Citations (Scopus)

Improved maize reference genome with single-molecule technologies

Jiao, Y., Peluso, P., Shi, J., Liang, T., Stitzer, M. C., Wang, B., Campbell, M. S., Stein, J. C., Wei, X., Chin, C. S., Guill, K., Regulski, M., Kumari, S., Olson, A., Gent, J., Schneider, K. L., Wolfgruber, T. K., May, M. R., Springer, N. M., Antoniou, E. & 8 others, McCombie, W. R., Presting, G. G., McMullen, M., Ross-Ibarra, J., Dawe, R. K., Hastie, A., Rank, D. R. & Ware, D., Jun 22 2017, In : Nature. 546, 7659, p. 524-527 4 p.

Research output: Contribution to journalArticle

Zea mays
Genome
Technology
DNA Transposable Elements
Plant Genome
17 Citations (Scopus)

Natural variation for gene expression responses to abiotic stress in maize

Waters, A. J., Makarevitch, I., Noshay, J., Burghardt, L. T., Hirsch, C. N., Hirsch, C. D. & Springer, N. M., Feb 1 2017, In : Plant Journal. 89, 4, p. 706-717 12 p.

Research output: Contribution to journalArticle

abiotic stress
Zea mays
RNA Sequence Analysis
Gene Expression
gene expression
15 Citations (Scopus)

The effect of artificial selection on phenotypic plasticity in maize

Gage, J. L., Jarquin, D., Romay, C., Lorenz, A., Buckler, E. S., Kaeppler, S., Alkhalifah, N., Bohn, M., Campbell, D. A., Edwards, J., Ertl, D., Flint-Garcia, S., Gardiner, J., Good, B., Hirsch, C. N., Holland, J., Hooker, D. C., Knoll, J., Kolkman, J., Kruger, G. & 20 others, Lauter, N., Lawrence-Dill, C. J., Lee, E., Lynch, J., Murray, S. C., Nelson, R., Petzoldt, J., Rocheford, T., Schnable, J., Schnable, P. S., Scully, B., Smith, M., Springer, N. M., Srinivasan, S., Walton, R., Weldekidan, T., Wisser, R. J., Xu, W., Yu, J. & De Leon, N., Dec 1 2017, In : Nature communications. 8, 1, 1348.

Research output: Contribution to journalArticle

plastic properties
Zea mays
Plasticity
Crops
Genotype
10 Citations (Scopus)

The repetitive landscape of the 5100 Mbp barley genome

Wicker, T., Schulman, A. H., Tanskanen, J., Spannagl, M., Twardziok, S., Mascher, M., Springer, N. M., Li, Q., Waugh, R., Li, C., Zhang, G., Stein, N., Mayer, K. F. X. & Gundlach, H., Dec 20 2017, In : Mobile DNA. 8, 1, 22.

Research output: Contribution to journalArticle

DNA Transposable Elements
Hordeum
Genome
Plant DNA
Genes
48 Citations (Scopus)

Transposable element influences on gene expression in plants

Hirsch, C. D. & Springer, N. M., Jan 1 2017, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1860, 1, p. 157-165 9 p.

Research output: Contribution to journalArticle

DNA Transposable Elements
Gene expression
Genes
Gene Expression
Plant Genome
2016
116 Citations (Scopus)

Advancing crop transformation in the era of genome editing

Altpeter, F., Springer, N. M., Bartley, L. E., Blechl, A. E., Brutnell, T. P., Citovsky, V., Conrad, L. J., Gelvin, S. B., Jackson, D. P., Kausch, A. P., Lemaux, P. G., Medford, J. I., Orozco-Cárdenas, M. L., Tricoli, D. M., Van Eck, J., Voytas, D. F., Walbot, V., Wang, K., Zhang, Z. J. & Neal Stewart, C., Jul 1 2016, In : Plant Cell. 28, 7, p. 1510-1520 11 p.

Research output: Contribution to journalArticle

genome
crops
Ensifer
synthetic biology
Regeneration
11 Citations (Scopus)

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias

Li, L., Briskine, R., Schaefer, R., Schnable, P. S., Myers, C. L., Flagel, L. E., Springer, N. M. & Muehlbauer, G. J., Nov 4 2016, In : BMC Genomics. 17, 1, 875.

Research output: Contribution to journalArticle

Duplicate Genes
Gene Duplication
Zea mays
Genome
Genes
60 Citations (Scopus)

Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize

Hirsch, C. N., Hirsch, C. D., Brohammer, A. B., Bowman, M. J., Soifer, I., Barad, O., Shem-Tov, D., Baruch, K., Lu, F., Hernandez, A. G., Fields, C. J., Wright, C. L., Koehler, K., Springer, N. M., Buckler, E., Buell, C. R., de Leon, N., Kaeppler, S. M., Childs, K. L. & Mikel, M. A., Nov 2016, In : Plant Cell. 28, 11, p. 2700-2714 15 p.

Research output: Contribution to journalArticle

Transcriptome
transcriptome
inbred lines
Zea mays
genome assembly
104 Citations (Scopus)

Widespread natural variation of DNA methylation within angiosperms

Niederhuth, C. E., Bewick, A. J., Ji, L., Alabady, M. S., Kim, K. D., Li, Q., Rohr, N. A., Rambani, A., Burke, J. M., Udall, J. A., Egesi, C., Schmutz, J., Grimwood, J., Jackson, S. A., Springer, N. M. & Schmitz, R. J., Sep 27 2016, In : Genome biology. 17, 1, 194.

Research output: Contribution to journalArticle

Angiosperms
methylation
DNA methylation
DNA Methylation
angiosperm
2015
29 Citations (Scopus)

Examining the causes and consequences of context-specific differential DNA methylation in maize

Li, Q., Song, J., West, P. T., Zynda, G., Eichten, S. R., Vaughn, M. W. & Springer, N. M., Aug 1 2015, In : Plant physiology. 168, 4, p. 1262-1274 13 p.

Research output: Contribution to journalArticle

DNA methylation
DNA Methylation
Zea mays
corn
Genes
12 Citations (Scopus)

Genomic limitations to RNA sequencing expression profiling

Hirsch, C. D., Springer, N. M. & Hirsch, C. N., Nov 1 2015, In : Plant Journal. 84, 3, p. 491-503 13 p.

Research output: Contribution to journalArticle

RNA Sequence Analysis
sequence analysis
genomics
Genes
genes
27 Citations (Scopus)

Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress

Eichten, S. R. & Springer, N. M., May 30 2015, In : Frontiers in Plant Science. 6, MAY, 308.

Research output: Contribution to journalArticle

DNA methylation
corn
microarray technology
genome
gene expression regulation
31 Citations (Scopus)

Post-conversion targeted capture of modified cytosines in mammalian and plant genomes

Li, Q., Suzuki, M., Wendt, J., Patterson, N., Eichten, S. R., Hermanson, P. J., Green, D., Jeddeloh, J., Richmond, T., Rosenbaum, H., Burgess, D., Springer, N. M. & Greally, J. M., Jan 1 2015, In : Nucleic acids research. 43, 12, e81.

Research output: Contribution to journalArticle

Plant Genome
Cytosine
5-Methylcytosine
DNA
Genome
23 Citations (Scopus)

Reassess the t test: Interact with all your data via ANOVA

Brady, S. M., Burow, M., Busch, W., Carlborg, Õ., Denby, K. J., Glazebrook, J., Hamilton, E. S., Harmer, S. L., Haswell, E. S., Maloof, J. N., Springer, N. M. & Kliebenstein, D. J., Aug 1 2015, In : Plant Cell. 27, 8, p. 2088-2094 7 p.

Research output: Contribution to journalArticle

Analysis of Variance
analysis of variance
Genotype
genotype
plant biology
64 Citations (Scopus)

RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

Li, Q., Gent, J. I., Zynda, G., Song, J., Makarevitch, I., Hirsch, C. D., Hirsch, C. N., Dawe, R. K., Madzima, T. F., McGinnis, K. M., Lisch, D., Schmitz, R. J., Vaughn, M. W. & Springer, N. M., Nov 24 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 47, p. 14728-14733 6 p.

Research output: Contribution to journalArticle

Euchromatin
Heterochromatin
DNA Methylation
Islands
Zea mays
115 Citations (Scopus)

Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

Makarevitch, I., Waters, A. J., West, P. T., Stitzer, M., Hirsch, C. N., Ross-Ibarra, J. & Springer, N. M., Jan 1 2015, In : PLoS genetics. 11, 1, e1004915.

Research output: Contribution to journalArticle

DNA Transposable Elements
transposons
Transcriptional Activation
abiotic stress
Zea mays
2014
28 Citations (Scopus)

Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize

Stelpflug, S. C., Eichten, S. R., Hermanson, P. J., Springer, N. M. & Kaeppler, S. M., Apr 11 2014, In : Genetics. 198, 1, p. 209-218 10 p.

Research output: Contribution to journalArticle

DNA Methylation
Zea mays
Epigenomics
Methylation
Genome
17 Citations (Scopus)

Discovering functional modules across diverse maize transcriptomes using COB, the co-expression browser

Schaefer, R. J., Briskine, R., Springer, N. M. & Myers, C. L., Jun 12 2014, In : PloS one. 9, 6, e99193.

Research output: Contribution to journalArticle

Atlases
Transcriptome
transcriptome
Zea mays
Genes
63 Citations (Scopus)

Epigenetics: Beyond chromatin modifications and complex genetic regulation

Eichten, S. R., Schmitz, R. J. & Springer, N. M., Jul 2014, In : Plant physiology. 165, 3, p. 933-947 15 p.

Research output: Contribution to journalArticle

Epigenomics
epigenetics
Chromatin
chromatin
histones
8 Citations (Scopus)

Genetic control of maize shoot apical meristem architecture

Thompson, A. M., Crants, J., Schnable, P. S., Yu, J., Timmermans, M. C. P., Springer, N. M., Scanlon, M. J. & Muehlbauer, G. J., Jan 1 2014, In : G3: Genes, Genomes, Genetics. 4, 7, p. 1327-1337 11 p.

Research output: Contribution to journalArticle

Meristem
Zea mays
Growth
Population
Chromosomes, Human, Pair 8
28 Citations (Scopus)

Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass are Independent of Those for Lignin abundance in a maize Recombinant Inbred population

Penning, B. W., Sykes, R. W., Babcock, N. C., Dugard, C. K., Held, M. A., Klimek, J. F., Shreve, J. T., Fowler, M., Ziebell, A., Davis, M. F., Decker, S. R., Turner, G. B., Mosier, N. S., Springer, N. M., Thimmapuram, J., Weil, C. F., Mccann, M. C. & Carpita, N. C., Aug 2014, In : Plant physiology. 165, 4, p. 1475-1487 13 p.

Research output: Contribution to journalArticle

Lignin
Biomass
Quantitative Trait Loci
Zea mays
Digestion
63 Citations (Scopus)

Genetic perturbation of the maize methylome

Li, Q., Eichten, S. R., Hermanson, P. J., Zaunbrecher, V. M., Song, J., Wendt, J., Rosenbaum, H., Madzima, T. F., Sloan, A. E., Huang, J., Burgess, D. L., Richmond, T. A., McGinnis, K. M., Meeley, R. B., Danilevskaya, O. N., Vaughn, M. W., Kaeppler, S. M., Jeddeloh, J. A. & Springer, N. M., Jan 1 2014, In : Plant Cell. 26, 12, p. 4602-4616 15 p.

Research output: Contribution to journalArticle

DNA Methylation
Zea mays
DNA methylation
Methylation
methylation
194 Citations (Scopus)

Genome-wide discovery and characterization of maize long non-coding RNAs

Li, L., Eichten, S. R., Shimizu, R., Petsch, K., Yeh, C. T., Wu, W., Chettoor, A. M., Givan, S. A., Cole, R. A., Fowler, J. E., Evans, M. M. S., Scanlon, M. J., Yu, J., Schnable, P. S., Timmermans, M. C. P., Springer, N. M. & Muehlbauer, G. J., Feb 27 2014, In : Genome biology. 15, 2, R40.

Research output: Contribution to journalArticle

Long Noncoding RNA
Zea mays
RNA
genome
maize
69 Citations (Scopus)

Genomic distribution of H3K9me2 and DNA methylation in a maize genome

West, P. T., Li, Q., Ji, L., Eichten, S. R., Song, J., Vaughn, M. W., Schmitz, R. J. & Springer, N. M., Aug 14 2014, In : PloS one. 9, 8, e105267.

Research output: Contribution to journalArticle

DNA methylation
DNA Methylation
Zea mays
transposons
Genes
30 Citations (Scopus)

Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines

Li, Q., Eichten, S. R., Hermanson, P. J. & Springer, N. M., Mar 2014, In : Genetics. 196, 3, p. 667-676 10 p.

Research output: Contribution to journalArticle

Inheritance Patterns
DNA Methylation
Zea mays
Epigenomics
Genotype
21 Citations (Scopus)

Insights into the effects of long-term artificial selection on seed size in maize

Hirsch, C. N., Flint-Garcia, S. A., Beissinger, T. M., Eichten, S. R., Deshpande, S., Barry, K., McMullen, M. D., Holland, J. B., Buckler, E. S., Springer, N., Robin Buell, C., de Leon, N. & Kaeppler, S. M., Apr 11 2014, In : Genetics. 198, 1

Research output: Contribution to journalArticle

Zea mays
Seeds
Population
Genome
Single Nucleotide Polymorphism
5 Citations (Scopus)

Utilization of deletion bins to anchor and order sequences along the wheat 7B chromosome

Belova, T., Grønvold, L., Kumar, A., Kianian, S., He, X., Lillemo, M., Springer, N. M., Lien, S., Olsen, O. A. & Sandve, S. R., Sep 1 2014, In : Theoretical and Applied Genetics. 127, 9, p. 2029-2040 12 p.

Research output: Contribution to journalArticle

Triticum
Chromosomes
chromosomes
wheat
physical chromosome mapping
2013
60 Citations (Scopus)

Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species

Waters, A. J., Bilinski, P., Eichten, S. R., Vaughn, M. W., Ross-Ibarra, J., Gehring, M. & Springer, N. M., Nov 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 48, p. 19639-19644 6 p.

Research output: Contribution to journalArticle

Zea mays
Genes
Endosperm
Alleles
Mothers
59 Citations (Scopus)

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

Muñoz-Amatriaín, M., Eichten, S. R., Wicker, T., Richmond, T. A., Mascher, M., Steuernagel, B., Scholz, U., Ariyadasa, R., Spannagl, M., Nussbaumer, T., Mayer, K. F. X., Taudien, S., Platzer, M., Jeddeloh, J. A., Springer, N. M., Muehlbauer, G. J. & Stein, N., Jun 12 2013, In : Genome biology. 14, 6, R58.

Research output: Contribution to journalArticle

Hordeum
barley
genome
Genome
comparative genomic hybridization