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Research Output 2009 2019

2019

Biological control of invasive fish and aquatic invertebrates: A brief review with case studies

Bajer, P., Ghosal, R., Maselko, M., Smanski, M. J., Lechelt, J. D., Hansen, G. A. & Kornis, M. S., Jun 1 2019, In : Management of Biological Invasions. 10, 2, p. 227-254 28 p.

Research output: Contribution to journalReview article

Open Access
aquatic invertebrates
crayfish
biological control
Cyprinus carpio
invertebrate

Genetic manipulation of sex ratio in mammals: the Reaper comes for Mickey

Smanski, M. J. & Zarkower, D. A., Jan 1 2019, In : EMBO Reports. 20, 8, e48577.

Research output: Contribution to journalComment/debate

Mammals
Sex Ratio
Agriculture
Animals
Genes

Stereoselective semi-synthesis of the neuroprotective natural product, serofendic acid

Perusse, D. & Smanski, M. J., Jan 1 2019, In : MedChemComm. 10, 6, p. 951-960 10 p.

Research output: Contribution to journalArticle

Biological Products
Equipment Reuse
Synthetic Biology
Ketones
Hydroxyl Radical
2018

Designing and implementing algorithmic DNA assembly pipelines for multi-gene systems

Hsu, S. Y. & Smanski, M. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 131-147 17 p. (Methods in Molecular Biology; vol. 1671).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA
Genetic Testing
Genes
Molecular Biology
Plasmids
Metabolic Engineering
Genes
Genetic Engineering
Workflow
Metabolic Networks and Pathways
2 Citations (Scopus)

Single Copy Transgene Integration in a Transcriptionally Active Site for Recombinant Protein Synthesis

O'Brien, S. A., Lee, K., Fu, H. Y., Lee, Z., Le, T. S., Stach, C., McCann, M. G., Zhang, A. Q., Smanski, M. J., Somia, N. V. & Hu, W-S., Oct 1 2018, In : Biotechnology Journal. 13, 10, 1800226.

Research output: Contribution to journalArticle

Transgenes
Recombinant Proteins
Catalytic Domain
Cell Line
Immunoglobulin G
2017
5 Citations (Scopus)

Engineering species-like barriers to sexual reproduction

Maselko, M., Heinsch, S. C., Chacon, J. M., Harcombe, W. & Smanski, M. J., Dec 1 2017, In : Nature communications. 8, 1, 883.

Research output: Contribution to journalArticle

Reproduction
Lethal Genes
engineering
directional control
Introduced Species
8 Citations (Scopus)

Genetic Design via Combinatorial Constraint Specification

Bhatia, S. P., Smanski, M. J., Voigt, C. A. & Densmore, D. M., Nov 17 2017, In : ACS Synthetic Biology. 6, 11, p. 2130-2135 6 p.

Research output: Contribution to journalArticle

Language
Specifications
Nitrogen Fixation
Nitrogen fixation
Formal languages

Genome sequences for Streptomyces spp. isolated from diseasesuppressive soils and long-term ecological research sites

Heinsch, S. C., Otto-Hanson, L., Hsu, S. Y., Kinkel, L. & Smanski, M. J., Jan 1 2017, In : Genome Announcements. 5, 23, e00493-17.

Research output: Contribution to journalArticle

Streptomyces
Soil
Genome
Research
Ecology
3 Citations (Scopus)

Meeting Report for Synthetic Biology for Natural Products 2017: The Interface of (Meta)Genomics, Machine Learning, and Natural Product Discovery

Smanski, M. J., Mead, D., Gustafsson, C. & Thomas, M. G., May 19 2017, In : ACS Synthetic Biology. 6, 5, p. 737-743 7 p.

Research output: Contribution to journalEditorial

2016
12 Citations (Scopus)

Leveraging ecological theory to guide natural product discovery

Smanski, M. J., Schlatter, D. C. & Kinkel, L. L., Mar 1 2016, In : Journal of Industrial Microbiology and Biotechnology. 43, 2-3, p. 115-128 14 p.

Research output: Contribution to journalArticle

Biological Products
Biosynthesis
Ecology
Ecosystems
Genes
165 Citations (Scopus)

Synthetic biology to access and expand nature's chemical diversity

Smanski, M. J., Zhou, H., Claesen, J., Shen, B., Fischbach, M. A. & Voigt, C. A., Feb 15 2016, In : Nature Reviews Microbiology. 14, 3, p. 135-149 15 p.

Research output: Contribution to journalReview article

Synthetic Biology
Biological Products
Genome
Bacterial Genomes
Drug Discovery
2015
241 Citations (Scopus)

Minimum Information about a Biosynthetic Gene cluster

Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K., De Bruijn, I., Chooi, Y. H., Claesen, J., Coates, R. C., Cruz-Morales, P., Duddela, S., Düsterhus, S., Edwards, D. J., Fewer, D. P., Garg, N., Geiger, C., Gomez-Escribano, J. P., Greule, A., Hadjithomas, M. & 134 others, Haines, A. S., Helfrich, E. J. N., Hillwig, M. L., Ishida, K., Jones, A. C., Jones, C. S., Jungmann, K., Kegler, C., Kim, H. U., Kötter, P., Krug, D., Masschelein, J., Melnik, A. V., Mantovani, S. M., Monroe, E. A., Moore, M., Moss, N., Nützmann, H. W., Pan, G., Pati, A., Petras, D., Reen, F. J., Rosconi, F., Rui, Z., Tian, Z., Tobias, N. J., Tsunematsu, Y., Wiemann, P., Wyckoff, E., Yan, X., Yim, G., Yu, F., Xie, Y., Aigle, B., Apel, A. K., Balibar, C. J., Balskus, E. P., Barona-Gómez, F., Bechthold, A., Bode, H. B., Borriss, R., Brady, S. F., Brakhage, A. A., Caffrey, P., Cheng, Y. Q., Clardy, J., Cox, R. J., De Mot, R., Donadio, S., Donia, M. S., Van Der Donk, W. A., Dorrestein, P. C., Doyle, S., Driessen, A. J. M., Ehling-Schulz, M., Entian, K. D., Fischbach, M. A., Gerwick, L., Gerwick, W. H., Gross, H., Gust, B., Hertweck, C., Höfte, M., Jensen, S. E., Ju, J., Katz, L., Kaysser, L., Klassen, J. L., Keller, N. P., Kormanec, J., Kuipers, O. P., Kuzuyama, T., Kyrpides, N. C., Kwon, H. J., Lautru, S., Lavigne, R., Lee, C. Y., Linquan, B., Liu, X., Liu, W., Luzhetskyy, A., Mahmud, T., Mast, Y., Méndez, C., Metsä-Ketelä, M., Micklefield, J., Mitchell, D. A., Moore, B. S., Moreira, L. M., Müller, R., Neilan, B. A., Nett, M., Nielsen, J., O'Gara, F., Oikawa, H., Osbourn, A., Osburne, M. S., Ostash, B., Payne, S. M., Pernodet, J. L., Petricek, M., Piel, J., Ploux, O., Raaijmakers, J. M., Salas, J. A., Schmitt, E. K., Scott, B., Seipke, R. F., Shen, B., Sherman, D. H., Sivonen, K., Smanski, M. J., Sosio, M., Stegmann, E., Süssmuth, R. D., Tahlan, K., Thomas, C. M., Tang, Y., Truman, A. W., Viaud, M., Walton, J. D., Walsh, C. T., Weber, T., Van Wezel, G. P., Wilkinson, B., Willey, J. M., Wohlleben, W., Wright, G. D., Ziemert, N., Zhang, C., Zotchev, S. B., Breitling, R., Takano, E. & Glöckner, F. O., Aug 18 2015, In : Nature Chemical Biology. 11, 9, p. 625-631 7 p.

Research output: Contribution to journalReview article

Multigene Family
Information Storage and Retrieval
Fungi
Bacteria
2014
150 Citations (Scopus)

Functional optimization of gene clusters by combinatorial design and assembly

Smanski, M. J., Bhatia, S., Zhao, D., Park, Y. J., Woodruff, L. B. A., Giannoukos, G., Ciulla, D., Busby, M., Calderon, J., Nicol, R., Gordon, D. B., Densmore, D. & Voigt, C. A., Dec 1 2014, In : Nature biotechnology. 32, 12, p. 1241-1249 9 p.

Research output: Contribution to journalArticle

Operon
Multigene Family
Genes
Microbial Genes
Klebsiella oxytoca
19 Citations (Scopus)

Mechanisms of self-resistance in the Platensimycin- and platencin-producing streptomyces platensis MA7327 and MA7339 strains

Peterson, R. M., Huang, T., Rudolf, J. D., Smanski, M. J. & Shen, B., Mar 20 2014, In : Chemistry and Biology. 21, 3, p. 389-397 9 p.

Research output: Contribution to journalArticle

Streptomyces
Fatty Acid Synthases
Biosynthesis
Fatty Acids
Genes

Scalable, accurate, and systematic engineering of synthetic pathways: Massively multiplexed DNA assembly, next-gen sequence verification, and model-guided design

Woodruff, L. B. A., Mikkelsen, T., Smanski, M. J., Gordon, D. B., Voigt, C. A. & Nicol, R., Jan 1 2014, Systems Biology 2014 - Topical Conference at the 2014 AIChE Annual Meeting. AIChE, 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA
2013
11 Citations (Scopus)

Isolation and structural elucidation of glucoside congeners of platencin from Streptomyces platensis SB12600

Yu, Z., Rateb, M. E., Smanski, M. J., Peterson, R. M. & Shen, B., May 1 2013, In : Journal of Antibiotics. 66, 5, p. 291-294 4 p.

Research output: Contribution to journalArticle

Polycyclic Compounds
Aminophenols
Metabolic Engineering
Glucosides
Streptomyces
2012
55 Citations (Scopus)

Bacterial diterpene synthases: New opportunities for mechanistic enzymology and engineered biosynthesis

Smanski, M. J., Peterson, R. M., Huang, S. X. & Shen, B., Apr 1 2012, In : Current Opinion in Chemical Biology. 16, 1-2, p. 132-141 10 p.

Research output: Contribution to journalReview article

Diterpenes
Biosynthesis
Biological Products
Biocatalysis
Farnesyltranstransferase
2 Citations (Scopus)

Biosynthesis of Pharmaceutical Natural Products and Their Pathway Engineering

Smanski, M. J., Qu, X. D., Liu, W., Shen, B., Tang, Y., Yu, Y. & Deng, Z. X., Aug 23 2012, Organic Chemistry: Breakthroughs and Perspectives. wiley, p. 125-180 56 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemistry
Biosynthesis
Biological Products
Pharmaceutical Preparations
28 Citations (Scopus)

Expression of the platencin biosynthetic gene cluster in heterologous hosts yielding new platencin congeners

Smanski, M. J., Casper, J., Peterson, R. M., Yu, Z., Rajski, S. R. & Shen, B., Dec 28 2012, In : Journal of Natural Products. 75, 12, p. 2158-2167 10 p.

Research output: Contribution to journalArticle

Multigene Family
Genes
Streptomyces
Streptomyces lividans
Biosynthesis
5 Citations (Scopus)
Diterpenes
Biosynthesis
Streptomyces
Biological Products
Ports and harbors
2011
67 Citations (Scopus)

Dedicated ent-kaurene and ent-atiserene synthases for platensimycin and platencin biosynthesis

Smanski, M. J., Yu, Z., Casper, J., Lin, S., Peterson, R. M., Chen, Y., Wendt-Pienkowski, E., Rajski, S. R. & Shen, B., Aug 16 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 33, p. 13498-13503 6 p.

Research output: Contribution to journalArticle

Kaurane Diterpenes
Biological Products
Type I Fatty Acid Synthase
Diterpenes
Streptomyces
2010
35 Citations (Scopus)

Engineering of streptomyces platensis MA7339 for overproduction of platencin and congeners

Yu, Z., Smanski, M. J., Peterson, R. M., Marchillo, K., Andes, D., Rajski, S. R. & Shen, B., Apr 16 2010, In : Organic Letters. 12, 8, p. 1744-1747 4 p.

Research output: Contribution to journalArticle

congeners
pathogens
antibiotics
regulators
Streptomyces
74 Citations (Scopus)

Improvement of secondary metabolite production in Streptomyces by manipulating pathway regulation

Chen, Y., Smanski, M. J. & Shen, B., Mar 1 2010, In : Applied Microbiology and Biotechnology. 86, 1, p. 19-25 7 p.

Research output: Contribution to journalShort survey

Metabolic Engineering
Streptomyces
Fermentation
Industry
Secondary Metabolism
2009
59 Citations (Scopus)

Engineered streptomyces platensis strains that overproduce antibiotics platensimycin and platencin

Smanski, M. J., Peterson, R. M., Rajski, S. R. & Shen, B., Apr 1 2009, In : Antimicrobial agents and chemotherapy. 53, 4, p. 1299-1304 6 p.

Research output: Contribution to journalArticle

Streptomyces
Anti-Bacterial Agents
Gene Deletion
Biological Products
Clone Cells