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Personal profile

Research interests

  • computational biology
  • bioinformatics

Fingerprint The Fingerprint is created by mining the titles and abstracts of the person's research outputs and projects/funding awards to create an index of weighted terms from discipline-specific thesauri.

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Projects

EPA Energy Star IT Infrastructure

Baller, J. A. & Kono, T.

CSRA, LLC

10/21/191/31/21

Project: Research project

  • Water Flea Toxicogenomics

    Baller, J. A.

    MN POLLUTION CONTROL AGENCY

    5/24/169/30/17

    Project: Research project

  • Research Output

    A comprehensive campus-based approach to address the opportunities and challenges posed by data intensive research

    Wilgenbusch, J. C., Bates, C., Johnston, L., Baller, J. A., Bollig, E. & Neuhauser, C., Jul 28 2019, Proceedings of the Practice and Experience in Advanced Research Computing: Rise of the Machines (Learning), PEARC 2019. Association for Computing Machinery, 3333162. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • ChURP: A lightweight CLI framework to enable novice users to analyze sequencing datasets in parallel

    Baller, J., Kono, T., Herman, A. & Zhang, Y., Jul 28 2019, Proceedings of the Practice and Experience in Advanced Research Computing: Rise of the Machines (Learning), PEARC 2019. Association for Computing Machinery, 3333156. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF

    Dale, J. L., Beckman, K. B., Willett, J. L. E., Nilson, J. L., Palani, N. P., Baller, J. A., Hauge, A., Gohl, D. M., Erickson, R., Manias, D. A., Sadowsky, M. J. & Dunny, G. M., Sep 1 2018, In : mSystems. 3, 5, e0006218.

    Research output: Contribution to journalArticle

    Open Access
  • 7 Scopus citations

    The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease

    Pragman, A. A., Lyu, T., Baller, J. A., Gould, T. J., Kelly, R. F., Reilly, C. S., Isaacson, R. E. & Wendt, C. H., Jan 1 2018, In : Microbiome. 6, 1, 7.

    Research output: Contribution to journalArticle

    Open Access
  • 23 Scopus citations

    ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: A disconnect between somatic and germinal cells

    Shan, Q., Baltes, N. J., Atkins, P., Kirkland, E. R., Zhang, Y., Baller, J. A., Lowder, L. G., Malzahn, A. A., Haugner, J. C., Seelig, B., Voytas, D. F. & Qi, Y., Dec 20 2018, In : Journal of Genetics and Genomics. 45, 12, p. 681-684 4 p.

    Research output: Contribution to journalLetter

    5 Scopus citations