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Research Output

  • 53 Article
  • 5 Conference contribution
  • 1 Comment/debate
  • 1 Review article
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Article
2020

Functional convergence in the decomposition of fungal necromass in soil and wood

Maillard, F., Schilling, J., Andrews, E., Schreiner, K. M. & Kennedy, P., Feb 1 2020, In : FEMS microbiology ecology. 96, 2, fiz209.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Fungal functional ecology: bringing a trait-based approach to plant-associated fungi

Zanne, A. E., Abarenkov, K., Afkhami, M. E., Aguilar-Trigueros, C. A., Bates, S., Bhatnagar, J. M., Busby, P. E., Christian, N., Cornwell, W. K., Crowther, T. W., Flores-Moreno, H., Floudas, D., Gazis, R., Hibbett, D., Kennedy, P., Lindner, D. L., Maynard, D. S., Milo, A. M., Nilsson, R. H., Powell, J. & 3 others, Schildhauer, M., Schilling, J. & Treseder, K. K., Apr 1 2020, In : Biological Reviews. 95, 2, p. 409-433 25 p.

Research output: Contribution to journalArticle

3 Scopus citations

Using Wood Rot Phenotypes to Illuminate the “Gray” Among Decomposer Fungi

Schilling, J. S., Kaffenberger, J. T., Held, B. W., Ortiz, R. & Blanchette, R. A., Jun 12 2020, In : Frontiers in Microbiology. 11, 1288.

Research output: Contribution to journalArticle

Open Access
2019

Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

Wu, B., Gaskell, J., Zhang, J., Toapanta, C., Ahrendt, S., Grigoriev, I. V., Blanchette, R. A., Schilling, J. S., Master, E., Cullen, D. & Hibbett, D. S., Jun 1 2019, In : ISME Journal. 13, 6, p. 1391-1403 13 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
1 Scopus citations

Gene regulation shifts shed light on fungal adaption in plant biomass decomposers

Zhang, J., Silverstein, K. A. T., Castaño, J. D., Figueroa, M. & Schilling, J. S., Nov 1 2019, In : mBio. 10, 6, e02176-19.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Reference genes for accurate normalization of gene expression in wood-decomposing fungi

Zhang, J., Mitchell, H. D., Markillie, L. M., Gaffrey, M. J., Orr, G. & Schilling, J., Feb 2019, In : Fungal Genetics and Biology. 123, p. 33-40 8 p.

Research output: Contribution to journalArticle

2 Scopus citations
2018

A genomics-informed study of oxalate and cellulase regulation by brown rot wood-degrading fungi

Presley, G. N., Zhang, J. & Schilling, J. S., Mar 2018, In : Fungal Genetics and Biology. 112, p. 64-70 7 p.

Research output: Contribution to journalArticle

11 Scopus citations

Brown Rot-Type Fungal Decomposition of Sorghum Bagasse: Variable Success and Mechanistic Implications

Presley, G. N., Ndimba, B. K. & Schilling, J. S., 2018, In : International Journal of Microbiology. 2018, 4961726.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Coupling secretomics with enzyme activities to compare the temporal processes of wood metabolism among white and brown rot fungi

Presley, G. N., Panisko, E., Purvine, S. O. & Schilling, J. S., Aug 1 2018, In : Applied and environmental microbiology. 84, 16, e00159-18.

Research output: Contribution to journalArticle

8 Scopus citations

Ecological and functional effects of fungal endophytes on wood decomposition

Cline, L. C., Schilling, J. S., Menke, J., Groenhof, E. & Kennedy, P. G., Jan 2018, In : Functional Ecology. 32, 1, p. 181-191 11 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations
3 Scopus citations

Oxidative damage control during decay of wood by brown rot fungus using oxygen radicals

Castaño, J. D., Zhang, J., Anderson, C. E. & Schilling, J. S., Nov 1 2018, In : Applied and environmental microbiology. 84, 22, e01937-18.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Substrate-specific differential gene expression and RNA editing in the brown rot fungus Fomitopsis pinicola

Wu, B., Gaskell, J., Held, B. W., Toapanta, C., Vuong, T., Ahrendt, S., Lipzen, A., Zhang, J., Schilling, J. S., Master, E., Grigoriev, I. V., Blanchette, R. A., Cullen, D. & Hibbett, D. S., Aug 1 2018, In : Applied and environmental microbiology. 84, 16, e00991-18.

Research output: Contribution to journalArticle

8 Scopus citations
2017

Decoupling direct and indirect effects of temperature on decomposition

Rubenstein, M. A., Crowther, T. W., Maynard, D. S., Schilling, J. S. & Bradford, M. A., Sep 1 2017, In : Soil Biology and Biochemistry. 112, p. 110-116 7 p.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Distinct growth and secretome strategies for two taxonomically divergent brown rot fungi

Presley, G. N. & Schilling, J. S., Apr 1 2017, In : Applied and environmental microbiology. 83, 7, e02987-16.

Research output: Contribution to journalArticle

Open Access
20 Scopus citations

Fungal endophytes as priority colonizers initiating wood decomposition

Song, Z., Kennedy, P. G., Liew, F. J. & Schilling, J. S., Feb 1 2017, In : Functional Ecology. 31, 2, p. 407-418 12 p.

Research output: Contribution to journalArticle

36 Scopus citations
Open Access
16 Scopus citations
2016
Open Access
2 Scopus citations

Capture of methane by fungi: Evidence from laboratory-scale biofilter and chromatographic isotherm studies

Oliver, J. P. & Schilling, J. S., Jan 1 2016, In : Transactions of the ASABE. 59, 6, p. 1791-1801 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

Forest composition modifies litter dynamics and decomposition in regenerating tropical dry forest

Schilling, E. M., Waring, B. G., Schilling, J. S. & Powers, J. S., Sep 1 2016, In : Oecologia. 182, 1, p. 287-297 11 p.

Research output: Contribution to journalArticle

12 Scopus citations

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

Nguyen, N. H., Song, Z., Bates, S. T., Branco, S., Tedersoo, L., Menke, J., Schilling, J. S. & Kennedy, P. G., Apr 1 2016, In : Fungal Ecology. 20, p. 241-248 8 p.

Research output: Contribution to journalArticle

607 Scopus citations

Hydroxyl availability in aspen wood after dilute acid pretreatment and enzymatic saccharification

Yang, H. S., Duncan, S. M., Hafez, I., Schilling, J. S. & Tze, W. T. Y., 2016, In : BioResources. 11, 3, p. 7490-7499 10 p.

Research output: Contribution to journalArticle

Open Access

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta

Zhang, J., Presley, G. N., Hammel, K. E., Ryu, J. S., Menke, J. R., Figueroa, M., Hu, D., Orr, G. & Schilling, J. S., Sep 27 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 39, p. 10968-10973 6 p.

Research output: Contribution to journalArticle

Open Access
54 Scopus citations
2015

Comparing lignocellulose physiochemistry after decomposition by brown rot fungi with distinct evolutionary origins

Kaffenberger, J. T. & Schilling, J. S., Dec 1 2015, In : Environmental microbiology. 17, 12, p. 4885-4897 13 p.

Research output: Contribution to journalArticle

14 Scopus citations

Influence of Hyphal Inoculum potential on the Competitive Success of Fungi Colonizing Wood

Song, Z., Vail, A., Sadowsky, M. J. & Schilling, J. S., May 1 2015, In : Microbial ecology. 69, 4, p. 758-767 10 p.

Research output: Contribution to journalArticle

15 Scopus citations

Initial white rot type dominance of wood decomposition and its functional consequences in a regenerating tropical dry forest

Schilling, J. S., Ayres, A., Kaffenberger, J. T. & Powers, J. S., Sep 1 2015, In : Soil Biology and Biochemistry. 88, p. 58-68 11 p.

Research output: Contribution to journalArticle

8 Scopus citations

Signature wood modifications reveal decomposer community history

Schilling, J. S., Kaffenberger, J. T., Liew, F. J. & Song, Z., Mar 26 2015, In : PloS one. 10, 3, e0120679.

Research output: Contribution to journalArticle

27 Scopus citations

Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing

Gordon, S. P., Tseng, E., Salamov, A., Zhang, J., Meng, X., Zhao, Z., Kang, D., Underwood, J., Grigoriev, I. V., Figueroa, M., Schilling, J. S., Chen, F. & Wang, Z., Jul 15 2015, In : PloS one. 10, 7, e0132628.

Research output: Contribution to journalArticle

106 Scopus citations
2014

Quantitative PCR for measuring biomass of decomposer fungi in planta

Song, Z., Vail, A., Sadowsky, M. J. & Schilling, J. S., Feb 1 2014, In : Fungal Ecology. 7, 1, p. 39-46 8 p.

Research output: Contribution to journalArticle

14 Scopus citations
2013

Colocalizing incipient reactions in wood degraded by the brown rot fungus Postia placenta

Schilling, J. S., Duncan, S. M., Presley, G. N., Filley, T. R., Jurgens, J. A. & Blanchette, R. A., Sep 1 2013, In : International Biodeterioration and Biodegradation. 83, p. 56-62 7 p.

Research output: Contribution to journalArticle

14 Scopus citations

Using a grass substrate to compare decay among two clades of brown rot fungi

Kaffenberger, J. T. & Schilling, J. S., Aug 7 2013, In : Applied Microbiology and Biotechnology. 97, 19, p. 8831-8840 10 p.

Research output: Contribution to journalArticle

8 Scopus citations
2012
4 Scopus citations

Competition between two wood-degrading fungi with distinct influences on residues

Song, Z., Vail, A., Sadowsky, M. J. & Schilling, J. S., Jan 1 2012, In : FEMS microbiology ecology. 79, 1, p. 109-117 9 p.

Research output: Contribution to journalArticle

21 Scopus citations

Lignocellulose modifications by brown rot fungi and their effects, as pretreatments, on cellulolysis

Schilling, J. S., Ai, J., Blanchette, R. A., Duncan, S. M., Filley, T. R. & Tschirner, U. W., Jul 1 2012, In : Bioresource Technology. 116, p. 147-154 8 p.

Research output: Contribution to journalArticle

41 Scopus citations

Potential of decaying wood to restore rootavailable base cations in depleted forest soils

Shortle, W. C., Smith, K. T., Jellison, J. & Schilling, J. S., Jun 1 2012, In : Canadian Journal of Forest Research. 42, 6, p. 1015-1024 10 p.

Research output: Contribution to journalArticle

14 Scopus citations
2011

Agar-block microcosms for controlled plant tissue decomposition by aerobic fungi.

Schilling, J. S. & Jacobson, K. B., Feb 2011, In : Journal of visualized experiments : JoVE. 48, e2283.

Research output: Contribution to journalArticle

Assessing the relative bioavailability of copper to fungi degrading treated wood

Schilling, J. S. & Inda, J., Jan 1 2011, In : International Biodeterioration and Biodegradation. 65, 1, p. 18-22 5 p.

Research output: Contribution to journalArticle

6 Scopus citations

Improved pretreatment of lignocellulosic biomass using enzymatically-generated peracetic acid

Yin, D. L. T., Jing, Q., AlDajani, W. W., Duncan, S., Tschirner, U. W., Schilling, J. S. & Kazlauskas, R. J., Apr 1 2011, In : Bioresource Technology. 102, 8, p. 5183-5192 10 p.

Research output: Contribution to journalArticle

42 Scopus citations
2010

Assessment of saccharification efficacy in the cellulase system of the brown rot fungus Gloeophyllum trabeum

Tewalt, J. & Schilling, J., May 1 2010, In : Applied Microbiology and Biotechnology. 86, 6, p. 1785-1793 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Carbohydrate-hydrolyzing enzyme ratios during fungal degradation of woody and non-woody lignocellulose substrates

Duncan, S. M. & Schilling, J. S., Dec 8 2010, In : Enzyme and Microbial Technology. 47, 7, p. 363-371 9 p.

Research output: Contribution to journalArticle

13 Scopus citations
13 Scopus citations

Effects of wood mixtures on deterioration by a filamentous brown-rot fungus

Schilling, J. S. & Norcutt, A., Apr 1 2010, In : Wood and Fiber Science. 42, 2, p. 150-157 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Increased saccharification yields from aspen biomass upon treatment with enzymatically generated peracetic acid

Duncan, S., Jing, Q., Katona, A., Kazlauskas, R. J., Schilling, J., Tschirner, U. & Wafa Aldajani, W., Mar 2010, In : Applied Biochemistry and Biotechnology. 160, 6, p. 1637-1652 16 p.

Research output: Contribution to journalArticle

22 Scopus citations
2009

Synergy between pretreatment lignocellulose modifications and saccharification efficiency in two brown rot fungal systems

Schilling, J. S., Tewalt, J. P. & Duncan, S. M., Sep 1 2009, In : Applied Microbiology and Biotechnology. 84, 3, p. 465-475 11 p.

Research output: Contribution to journalArticle

43 Scopus citations
2008

Iron and calcium translocation from pure gypsum and iron-amended gypsum by two brown rot fungi and a white rot fungus

Schilling, J. S. & Bissonnette, K. M., Nov 1 2008, In : Holzforschung. 62, 6, p. 752-758 7 p.

Research output: Contribution to journalArticle

10 Scopus citations
2007

Concentrations of Ca and Mg in early stages of sapwood decay in red spruce, eastern hemlock, red maple, and paper birch

Smith, K. T., Shortle, W. C., Jellison, J., Connolly, J. & Schilling, J., May 1 2007, In : Canadian Journal of Forest Research. 37, 5, p. 957-965 9 p.

Research output: Contribution to journalArticle

18 Scopus citations
15 Scopus citations
2006

Metal accumulation without enhanced oxalate secretion in wood degraded by brown rot fungi

Schilling, J. S. & Jellison, J., Aug 2006, In : Applied and environmental microbiology. 72, 8, p. 5662-5665 4 p.

Research output: Contribution to journalArticle

21 Scopus citations