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Research Output 2002 2019

  • 49 Article
  • 5 Conference contribution
  • 1 Comment/debate
  • 1 Review article
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Article
2019

Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

Wu, B., Gaskell, J., Zhang, J., Toapanta, C., Ahrendt, S., Grigoriev, I. V., Blanchette, R. A., Schilling, J. S., Master, E., Cullen, D. & Hibbett, D. S., Jun 1 2019, In : ISME Journal. 13, 6, p. 1391-1403 13 p.

Research output: Contribution to journalArticle

RNA Editing
RNA editing
decay fungi
gene expression
RNA
Decay (organic)
Fungi
Fluorescence In Situ Hybridization
Gene expression
gene expression
1 Citation (Scopus)

Reference genes for accurate normalization of gene expression in wood-decomposing fungi

Zhang, J., Mitchell, H. D., Markillie, L. M., Gaffrey, M. J., Orr, G. & Schilling, J. S., Feb 1 2019, In : Fungal Genetics and Biology. 123, p. 33-40 8 p.

Research output: Contribution to journalArticle

Fungi
Gene Expression
Genes
Carbon
Fungal Genes
2018
10 Citations (Scopus)

A genomics-informed study of oxalate and cellulase regulation by brown rot wood-degrading fungi

Presley, G. N., Zhang, J. & Schilling, J. S., Mar 1 2018, In : Fungal Genetics and Biology. 112, p. 64-70 7 p.

Research output: Contribution to journalArticle

Oxalates
Cellulase
Genomics
Fungi
oxalate decarboxylase

Brown Rot-Type Fungal Decomposition of Sorghum Bagasse: Variable Success and Mechanistic Implications

Presley, G. N., Ndimba, B. K. & Schilling, J. S., Jan 1 2018, In : International Journal of Microbiology. 2018, 4961726.

Research output: Contribution to journalArticle

Sorghum
Fungi
Poaceae
Placenta
Coriolaceae
2 Citations (Scopus)

Coupling secretomics with enzyme activities to compare the temporal processes of wood metabolism among white and brown rot fungi

Presley, G. N., Panisko, E., Purvine, S. O. & Schilling, J. S., Aug 1 2018, In : Applied and environmental microbiology. 84, 16, e00159-18.

Research output: Contribution to journalArticle

brown-rot fungi
white-rot fungi
enzyme activity
Fungi
metabolism
8 Citations (Scopus)

Ecological and functional effects of fungal endophytes on wood decomposition

Cline, L. C., Schilling, J. S., Menke, J., Groenhof, E. & Kennedy, P. G., Jan 2018, In : Functional Ecology. 32, 1, p. 181-191 11 p.

Research output: Contribution to journalArticle

decayed wood
endophyte
endophytes
decomposition
deterioration
2 Citations (Scopus)
Plant Cells
Cell Wall
Hydrogen Peroxide
Limit of Detection
Reactive Oxygen Species
1 Citation (Scopus)

Oxidative damage control during decay of wood by brown rot fungus using oxygen radicals

Castaño, J. D., Zhang, J., Anderson, C. E. & Schilling, J. S., Nov 1 2018, In : Applied and environmental microbiology. 84, 22, e01937-18.

Research output: Contribution to journalArticle

brown-rot fungi
decayed wood
hydroxyl radicals
hydroxyl radical
Hydroxyl Radical
2 Citations (Scopus)

Substrate-specific differential gene expression and RNA editing in the brown rot fungus Fomitopsis pinicola

Wu, B., Gaskell, J., Held, B. W., Toapanta, C., Vuong, T., Ahrendt, S., Lipzen, A., Zhang, J., Schilling, J. S., Master, E., Grigoriev, I. V., Blanchette, R. A., Cullen, D. & Hibbett, D. S., Aug 1 2018, In : Applied and environmental microbiology. 84, 16, e00991-18.

Research output: Contribution to journalArticle

Fomitopsis pinicola
Coriolaceae
RNA Editing
brown-rot fungi
RNA editing
2017
9 Citations (Scopus)

Decoupling direct and indirect effects of temperature on decomposition

Rubenstein, M. A., Crowther, T. W., Maynard, D. S., Schilling, J. S. & Bradford, M. A., Sep 1 2017, In : Soil Biology and Biochemistry. 112, p. 110-116 7 p.

Research output: Contribution to journalArticle

decomposition
Temperature
degradation
temperature
Biomass
15 Citations (Scopus)

Distinct growth and secretome strategies for two taxonomically divergent brown rot fungi

Presley, G. N. & Schilling, J. S., Apr 1 2017, In : Applied and environmental microbiology. 83, 7, e02987-16.

Research output: Contribution to journalArticle

brown-rot fungi
Serpula lacrymans
Fungi
Gloeophyllum trabeum
fungus
28 Citations (Scopus)

Fungal endophytes as priority colonizers initiating wood decomposition

Song, Z., Kennedy, P. G., Liew, F. J. & Schilling, J. S., Feb 1 2017, In : Functional Ecology. 31, 2, p. 407-418 12 p.

Research output: Contribution to journalArticle

decayed wood
endophyte
endophytes
brown-rot fungi
decomposition
11 Citations (Scopus)
Cellobiose
Placenta
Cellulase
Oxidoreductases
Carbon
2016
Costs and Cost Analysis
Food
Livestock
Bioreactors
Zea mays
2 Citations (Scopus)
Biofiltration
biofiltration
Biofilms
bait
biofilm
5 Citations (Scopus)

Capture of methane by fungi: Evidence from laboratory-scale biofilter and chromatographic isotherm studies

Oliver, J. P. & Schilling, J. S., Jan 1 2016, In : Transactions of the ASABE. 59, 6, p. 1791-1801 11 p.

Research output: Contribution to journalArticle

Biofilters
biofilters
Methane
Livestock
Fungi
8 Citations (Scopus)

Forest composition modifies litter dynamics and decomposition in regenerating tropical dry forest

Schilling, E. M., Waring, B., Schilling, J. S. & Powers, J. S., Sep 1 2016, In : Oecologia. 182, 1, p. 287-297 11 p.

Research output: Contribution to journalArticle

dry forest
dry forests
tropical forests
tropical forest
litter
424 Citations (Scopus)

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

Nguyen, N. H., Song, Z., Bates, S. T., Branco, S., Tedersoo, L., Menke, J., Schilling, J. S. & Kennedy, P. G., Apr 1 2016, In : Fungal Ecology. 20, p. 241-248 8 p.

Research output: Contribution to journalArticle

fungal communities
guild
grassland soils
fungus
forest soils

Hydroxyl availability in aspen wood after dilute acid pretreatment and enzymatic saccharification

Yang, H. S., Duncan, S. M., Hafez, I., Schilling, J. S. & Tze, W. T. Y., Jan 1 2016, In : BioResources. 11, 3, p. 7490-7499 10 p.

Research output: Contribution to journalArticle

Saccharification
Hydroxyl Radical
Wood
Availability
Acids
40 Citations (Scopus)

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta

Zhang, J., Presley, G. N., Hammel, K. E., Ryu, J. S., Menke, J. R., Figueroa, M., Hu, D., Orr, G. & Schilling, J. S., Sep 27 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 39, p. 10968-10973 6 p.

Research output: Contribution to journalArticle

Placenta
Reactive Oxygen Species
Fungi
Glycoside Hydrolases
Polygalacturonase
2015
12 Citations (Scopus)

Comparing lignocellulose physiochemistry after decomposition by brown rot fungi with distinct evolutionary origins

Kaffenberger, J. T. & Schilling, J. S., Dec 1 2015, In : Environmental microbiology. 17, 12, p. 4885-4897 13 p.

Research output: Contribution to journalArticle

brown-rot fungi
lignocellulose
Lignin
lignin
Fungi
13 Citations (Scopus)

Influence of Hyphal Inoculum potential on the Competitive Success of Fungi Colonizing Wood

Song, Z., Vail, A., Sadowsky, M. J. & Schilling, J. S., May 1 2015, In : Microbial Ecology. 69, 4, p. 758-767 10 p.

Research output: Contribution to journalArticle

inoculum
fungus
fungi
brown-rot fungi
Irpex lacteus
7 Citations (Scopus)

Initial white rot type dominance of wood decomposition and its functional consequences in a regenerating tropical dry forest

Schilling, J. S., Ayres, A., Kaffenberger, J. T. & Powers, J. S., Sep 1 2015, In : Soil Biology and Biochemistry. 88, p. 58-68 11 p.

Research output: Contribution to journalArticle

decayed wood
dry forest
dry forests
amsonic acid
tropical forests
22 Citations (Scopus)

Signature wood modifications reveal decomposer community history

Schilling, J. S., Kaffenberger, J. T., Liew, F. J. & Song, Z., Mar 26 2015, In : PloS one. 10, 3, e0120679.

Research output: Contribution to journalArticle

amsonic acid
Wood
History
history
decayed wood
78 Citations (Scopus)

Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing

Gordon, S. P., Tseng, E., Salamov, A., Zhang, J., Meng, X., Zhao, Z., Kang, D., Underwood, J., Grigoriev, I. V., Figueroa, M., Schilling, J. S., Chen, F. & Wang, Z., Jul 15 2015, In : PloS one. 10, 7, e0132628.

Research output: Contribution to journalArticle

Fungi
transcription (genetics)
Genes
Messenger RNA
Molecules
2014
12 Citations (Scopus)

Quantitative PCR for measuring biomass of decomposer fungi in planta

Song, Z., Vail, A., Sadowsky, M. J. & Schilling, J. S., Feb 1 2014, In : Fungal Ecology. 7, 1, p. 39-46 8 p.

Research output: Contribution to journalArticle

Plantae
quantitative polymerase chain reaction
fungus
fungi
biomass
2013
12 Citations (Scopus)

Colocalizing incipient reactions in wood degraded by the brown rot fungus Postia placenta

Schilling, J. S., Duncan, S. M., Presley, G. N., Filley, T. R., Jurgens, J. A. & Blanchette, R. A., Sep 1 2013, In : International Biodeterioration and Biodegradation. 83, p. 56-62 7 p.

Research output: Contribution to journalArticle

Fungi
Placenta
Cellulase
Lignin
Wood
5 Citations (Scopus)

Using a grass substrate to compare decay among two clades of brown rot fungi

Kaffenberger, J. T. & Schilling, J. S., Aug 7 2013, In : Applied Microbiology and Biotechnology. 97, 19, p. 8831-8840 10 p.

Research output: Contribution to journalArticle

Antrodia
Poaceae
Fungi
Zea mays
Placenta
2012
4 Citations (Scopus)
Copper
Wood
copper
tolerance
Fungi
21 Citations (Scopus)

Competition between two wood-degrading fungi with distinct influences on residues

Song, Z., Vail, A., Sadowsky, M. J. & Schilling, J. S., Jan 1 2012, In : FEMS Microbiology Ecology. 79, 1, p. 109-117 9 p.

Research output: Contribution to journalArticle

Fungi
fungus
Information Science
Ergosterol
ergosterol
37 Citations (Scopus)

Lignocellulose modifications by brown rot fungi and their effects, as pretreatments, on cellulolysis

Schilling, J. S., Ai, J., Blanchette, R. A., Duncan, S. M., Filley, T. R. & Tschirner, U. W., Jul 1 2012, In : Bioresource Technology. 116, p. 147-154 8 p.

Research output: Contribution to journalArticle

Saccharification
Fungi
Cellulases
Cellulase
Lignin
14 Citations (Scopus)

Potential of decaying wood to restore rootavailable base cations in depleted forest soils

Shortle, W. C., Smith, K. T., Jellison, J. & Schilling, J. S., Jun 1 2012, In : Canadian Journal of Forest Research. 42, 6, p. 1015-1024 10 p.

Research output: Contribution to journalArticle

decayed wood
wood residues
forest soils
forest soil
cations
2011

Agar-block microcosms for controlled plant tissue decomposition by aerobic fungi.

Schilling, J. S. & Jacobson, K. B., Feb 2011, In : Journal of visualized experiments : JoVE. 48, e2283.

Research output: Contribution to journalArticle

Fungi
Agar
Soil
Tissue
Decomposition
6 Citations (Scopus)

Assessing the relative bioavailability of copper to fungi degrading treated wood

Schilling, J. S. & Inda, J., Jan 1 2011, In : International Biodeterioration and Biodegradation. 65, 1, p. 18-22 5 p.

Research output: Contribution to journalArticle

Fungi
Biological Availability
bioavailability
Copper
Wood
39 Citations (Scopus)

Improved pretreatment of lignocellulosic biomass using enzymatically-generated peracetic acid

Yin, D. L. T., Jing, Q., AlDajani, W. W., Duncan, S., Tschirner, U. W., Schilling, J. S. & Kazlauskas, R. J., Apr 1 2011, In : Bioresource Technology. 102, 8, p. 5183-5192 10 p.

Research output: Contribution to journalArticle

Peracetic Acid
Lignin
Biomass
Sugars
lignin
2010
10 Citations (Scopus)

Assessment of saccharification efficacy in the cellulase system of the brown rot fungus Gloeophyllum trabeum

Tewalt, J. & Schilling, J. S., May 1 2010, In : Applied Microbiology and Biotechnology. 86, 6, p. 1785-1793 9 p.

Research output: Contribution to journalArticle

Cellulase
Fungi
Cellulases
Glucose
Polysaccharides
12 Citations (Scopus)

Carbohydrate-hydrolyzing enzyme ratios during fungal degradation of woody and non-woody lignocellulose substrates

Duncan, S. M. & Schilling, J. S., Dec 8 2010, In : Enzyme and Microbial Technology. 47, 7, p. 363-371 9 p.

Research output: Contribution to journalArticle

Carbohydrates
Enzymes
Cellulase
Glucosidases
Degradation
12 Citations (Scopus)
Fungi
Calcium
Wood
Iron
Impurities
3 Citations (Scopus)

Effects of wood mixtures on deterioration by a filamentous brown-rot fungus

Schilling, J. S. & Norcutt, A., Apr 1 2010, In : Wood and Fiber Science. 42, 2, p. 150-157 8 p.

Research output: Contribution to journalArticle

brown-rot fungi
Fungi
Deterioration
Wood
deterioration
21 Citations (Scopus)

Increased saccharification yields from aspen biomass upon treatment with enzymatically generated peracetic acid

Duncan, S., Jing, Q., Katona, A., Kazlauskas, R. J., Schilling, J., Tschirner, U. & Wafa Aldajani, W., Mar 1 2010, In : Applied Biochemistry and Biotechnology. 160, 6, p. 1637-1652 16 p.

Research output: Contribution to journalArticle

Peracetic Acid
Saccharification
Lignin
Biomass
Sugars
2009
43 Citations (Scopus)

Synergy between pretreatment lignocellulose modifications and saccharification efficiency in two brown rot fungal systems

Schilling, J. S., Tewalt, J. P. & Duncan, S. M., Sep 1 2009, In : Applied Microbiology and Biotechnology. 84, 3, p. 465-475 11 p.

Research output: Contribution to journalArticle

Fungi
Cellulases
Coriolaceae
Trichoderma
Lignin
2008
10 Citations (Scopus)

Iron and calcium translocation from pure gypsum and iron-amended gypsum by two brown rot fungi and a white rot fungus

Schilling, J. S. & Bissonnette, K. M., Nov 1 2008, In : Holzforschung. 62, 6, p. 752-758 7 p.

Research output: Contribution to journalArticle

Calcium Sulfate
Gypsum
Fungi
Calcium
Iron
2007
18 Citations (Scopus)

Concentrations of Ca and Mg in early stages of sapwood decay in red spruce, eastern hemlock, red maple, and paper birch

Smith, K. T., Shortle, W. C., Jellison, J., Connolly, J. & Schilling, J. S., May 1 2007, In : Canadian Journal of Forest Research. 37, 5, p. 957-965 9 p.

Research output: Contribution to journalArticle

Tsuga canadensis
Betula papyrifera
Acer rubrum
sapwood
Picea
14 Citations (Scopus)
Calcium Sulfate
Oxalates
Gypsum
oxalate
Biodegradation
2006
20 Citations (Scopus)

Metal accumulation without enhanced oxalate secretion in wood degraded by brown rot fungi

Schilling, J. S. & Jellison, J., Aug 1 2006, In : Applied and environmental microbiology. 72, 8, p. 5662-5665 4 p.

Research output: Contribution to journalArticle

brown-rot fungi
Oxalates
oxalates
oxalate
secretion
2005
35 Citations (Scopus)

Oxalate regulation by two brown rot fungi decaying oxalate-amended and non-amended wood

Schilling, J. S. & Jellison, J., Nov 1 2005, Holzforschung, 59, 6, p. 681-688 8 p.

Research output: Contribution to specialist publicationArticle

Oxalates
Fungi
Wood
Decay (organic)
Soils
2004
16 Citations (Scopus)

High-performance liquid chromatographic analysis of soluble and total oxalate in Ca- And Mg-amended liquid cultures of three wood decay fungi

Schilling, J. S. & Jellison, J., Nov 22 2004, Holzforschung, 58, 6, p. 682-687 6 p.

Research output: Contribution to specialist publicationArticle

Decay (organic)
Oxalates
High performance liquid chromatography
Fungi
Magnesium
2002
45 Citations (Scopus)

Bioindication of atmospheric heavy metal deposition in the Southeastern US using the moss Thuidium delicatulum

Schilling, J. S. & Lehman, M. E., Apr 15 2002, In : Atmospheric Environment. 36, 10, p. 1611-1618 8 p.

Research output: Contribution to journalArticle

moss
heavy metal
fern
monitoring
metal