Jonathan B Clayton

Doctor of Veterinary Medicine, Doctor of Philosophy

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Research Output 2011 2019


Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non-human primate zoological collection

Clayton, J. B., Danzeisen, J. L., Johnson, T., Trent, A. M., Hayer, S. S., Murphy, T., Wuenschmann, A., Elder, M., Shen, Z., Mannion, A., Bryant, E., Knights, D. & Fox, J. G., Apr 1 2019, In : Journal of Medical Primatology. 48, 2, p. 114-122 9 p.

Research output: Contribution to journalArticle

Campylobacter upsaliensis
Campylobacter jejuni
Host Specificity
3 Citations (Scopus)

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

Clayton, J. B., Al-Ghalith, G. A., Long, H. T., Tuan, B. V., Cabana, F., Huang, H., Vangay, P., Ward, T., Minh, V. V., Tam, N. A., Dat, N. T., Travis, D. A., Murtaugh, M. P., Covert, H., Glander, K. E., Nadler, T., Toddes, B., Sha, J. C. M., Singer, R., Knights, D. & 1 othersJohnson, T. J., Dec 1 2018, In : Scientific reports. 8, 1, 11159.

Research output: Contribution to journalArticle

Open Access
Life Style
7 Citations (Scopus)

The gut microbiome of nonhuman primates: Lessons in ecology and evolution

Clayton, J. B., Gomez, A., Amato, K., Knights, D., Travis, D. A., Blekhman, R., Knight, R., Leigh, S., Stumpf, R., Wolf, T. M., Glander, K. E., Cabana, F. & Johnson, T., Jun 1 2018, In : American journal of primatology. 80, 6, e22867.

Research output: Contribution to journalReview article

digestive system
human health
188 Citations (Scopus)

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., Navas-Molina, J. A., Janssen, S., Kopylova, E., Vázquez-Baeza, Y., González, A., Morton, J. T., Mirarab, S., Xu, Z. Z., Jiang, L., Haroon, M. F. & 31 othersKanbar, J., Zhu, Q., Song, S. J., Kosciolek, T., Bokulich, N. A., Lefler, J., Brislawn, C. J., Humphrey, G., Owens, S. M., Hampton-Marcell, J., Berg-Lyons, D., McKenzie, V., Fierer, N., Fuhrman, J. A., Clauset, A., Stevens, R. L., Shade, A., Pollard, K. S., Goodwin, K. D., Jansson, J. K., Gilbert, J. A., Knight, R., Agosto Rivera, J. L., Al-Moosawi, L., Alverdy, J., Amato, K. R., Andras, J., Angenent, L. T., Antonopoulos, D. A., Clayton, J. B. & Earth Microbiome Project Consortium, Nov 23 2017, In : Nature. 551, 7681, p. 457-463 7 p.

Research output: Contribution to journalArticle

Archaeal RNA
Archaeal Genes
Foster Home Care
DNA Sequence Analysis
5 Citations (Scopus)

Diverse bacterial communities exist on canine skin and are impacted by cohabitation and time

Torres, S. M., Clayton, J. B., Danzeisen, J. L., Ward, T., Huang, H., Knights, D. & Johnson, T., Jan 1 2017, In : PeerJ. 2017, 3, e3075.

Research output: Contribution to journalArticle

bacterial communities
skin (animal)
10 Citations (Scopus)

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi)

Springer, A., Fichtel, C., Al-Ghalith, G. A., Koch, F., Amato, K. R., Clayton, J. B., Knights, D. & Kappeler, P. M., Jan 1 2017, In : Ecology and Evolution. 7, 15, p. 5732-5745 14 p.

Research output: Contribution to journalArticle

longitudinal studies
food availability
intestinal microorganisms
73 Citations (Scopus)

Captivity humanizes the primate microbiome

Clayton, J. B., Vangay, P., Huang, H., Ward, T., Hillmann, B. M., Al-Ghalith, G. A., Travis, D. A., Long, H. T., Van Tuan, B., Van Minh, V., Cabana, F., Nadler, T., Toddes, B., Murphy, T., Glander, K. E., Johnson, T. & Knights, D., Sep 13 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 37, p. 10376-10381 6 p.

Research output: Contribution to journalArticle

Life Style
High-Throughput Nucleotide Sequencing
111 Citations (Scopus)

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

Gohl, D. M., Vangay, P., Garbe, J. R., MacLean, A., Hauge, A., Becker, A., Gould, T. J., Clayton, J. B., Johnson, T., Hunter, R. C., Knights, D. & Beckman, K. B., Sep 1 2016, In : Nature biotechnology. 34, 9, p. 942-949 8 p.

Research output: Contribution to journalArticle

Practice Guidelines
12 Citations (Scopus)

Using the gut microbiota as a novel tool for examining colobine primate GI health

Amato, K. R., Metcalf, J. L., Song, S. J., Hale, V. L., Clayton, J., Ackermann, G., Humphrey, G., Niu, K., Cui, D., Zhao, H., Schrenzel, M. D., Tan, C. L., Knight, R. & Braun, J., Jul 1 2016, In : Global Ecology and Conservation. 7, p. 225-237 13 p.

Research output: Contribution to journalArticle

intestinal microorganisms
relative abundance
captive population
16 Citations (Scopus)
1 Citation (Scopus)

Longitudinal characterization of Escherichia coli in healthy captive non-human primates

Clayton, J. B., Danzeisen, J. L., Trent, A. M., Murphy, T. & Johnson, T. J., Nov 17 2014, In : Frontiers in Veterinary Science. 1, NOV, 24.

Research output: Contribution to journalArticle

Escherichia coli
2 Citations (Scopus)

Dietary choices by four captive slender lorises (Loris tardigradus) when presented with various insect life stages

Clayton, J. B. & Glander, K. E., Mar 1 2011, In : Zoo Biology. 30, 2, p. 189-198 10 p.

Research output: Contribution to journalArticle

food choices
Zophobas atratus