Jonathan B Clayton

Doctor of Veterinary Medicine, Doctor of Philosophy

20112019
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Research Output 2011 2019

2019

Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non-human primate zoological collection

Clayton, J. B., Danzeisen, J. L., Johnson, T., Trent, A. M., Hayer, S. S., Murphy, T., Wuenschmann, A., Elder, M., Shen, Z., Mannion, A., Bryant, E., Knights, D. & Fox, J. G., Apr 1 2019, In : Journal of Medical Primatology. 48, 2, p. 114-122 9 p.

Research output: Contribution to journalArticle

Campylobacter upsaliensis
Campylobacter jejuni
Campylobacter
Primates
Host Specificity
2018
3 Citations (Scopus)

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

Clayton, J. B., Al-Ghalith, G. A., Long, H. T., Tuan, B. V., Cabana, F., Huang, H., Vangay, P., Ward, T., Minh, V. V., Tam, N. A., Dat, N. T., Travis, D. A., Murtaugh, M. P., Covert, H., Glander, K. E., Nadler, T., Toddes, B., Sha, J. C. M., Singer, R., Knights, D. & 1 othersJohnson, T. J., Dec 1 2018, In : Scientific reports. 8, 1, 11159.

Research output: Contribution to journalArticle

Open Access
Primates
Life Style
Dysbiosis
Health
Prevotella
7 Citations (Scopus)

The gut microbiome of nonhuman primates: Lessons in ecology and evolution

Clayton, J. B., Gomez, A., Amato, K., Knights, D., Travis, D. A., Blekhman, R., Knight, R., Leigh, S., Stumpf, R., Wolf, T. M., Glander, K. E., Cabana, F. & Johnson, T., Jun 1 2018, In : American journal of primatology. 80, 6, e22867.

Research output: Contribution to journalReview article

primate
Primates
digestive system
ecology
human health
2017
188 Citations (Scopus)

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., Navas-Molina, J. A., Janssen, S., Kopylova, E., Vázquez-Baeza, Y., González, A., Morton, J. T., Mirarab, S., Xu, Z. Z., Jiang, L., Haroon, M. F. & 31 othersKanbar, J., Zhu, Q., Song, S. J., Kosciolek, T., Bokulich, N. A., Lefler, J., Brislawn, C. J., Humphrey, G., Owens, S. M., Hampton-Marcell, J., Berg-Lyons, D., McKenzie, V., Fierer, N., Fuhrman, J. A., Clauset, A., Stevens, R. L., Shade, A., Pollard, K. S., Goodwin, K. D., Jansson, J. K., Gilbert, J. A., Knight, R., Agosto Rivera, J. L., Al-Moosawi, L., Alverdy, J., Amato, K. R., Andras, J., Angenent, L. T., Antonopoulos, D. A., Clayton, J. B. & Earth Microbiome Project Consortium, Nov 23 2017, In : Nature. 551, 7681, p. 457-463 7 p.

Research output: Contribution to journalArticle

Archaeal RNA
Archaeal Genes
Foster Home Care
Microbiota
DNA Sequence Analysis
5 Citations (Scopus)

Diverse bacterial communities exist on canine skin and are impacted by cohabitation and time

Torres, S. M., Clayton, J. B., Danzeisen, J. L., Ward, T., Huang, H., Knights, D. & Johnson, T., Jan 1 2017, In : PeerJ. 2017, 3, e3075.

Research output: Contribution to journalArticle

bacterial communities
skin (animal)
Canidae
Skin
Dogs
10 Citations (Scopus)

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi)

Springer, A., Fichtel, C., Al-Ghalith, G. A., Koch, F., Amato, K. R., Clayton, J. B., Knights, D. & Kappeler, P. M., Jan 1 2017, In : Ecology and Evolution. 7, 15, p. 5732-5745 14 p.

Research output: Contribution to journalArticle

longitudinal studies
food availability
intestinal microorganisms
primate
seasonality
2016
73 Citations (Scopus)

Captivity humanizes the primate microbiome

Clayton, J. B., Vangay, P., Huang, H., Ward, T., Hillmann, B. M., Al-Ghalith, G. A., Travis, D. A., Long, H. T., Van Tuan, B., Van Minh, V., Cabana, F., Nadler, T., Toddes, B., Murphy, T., Glander, K. E., Johnson, T. & Knights, D., Sep 13 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 37, p. 10376-10381 6 p.

Research output: Contribution to journalArticle

Microbiota
Primates
Life Style
Prevotella
High-Throughput Nucleotide Sequencing
111 Citations (Scopus)

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

Gohl, D. M., Vangay, P., Garbe, J. R., MacLean, A., Hauge, A., Becker, A., Gould, T. J., Clayton, J. B., Johnson, T., Hunter, R. C., Knights, D. & Beckman, K. B., Sep 1 2016, In : Nature biotechnology. 34, 9, p. 942-949 8 p.

Research output: Contribution to journalArticle

Microbiota
Genes
Libraries
Amplification
Practice Guidelines
12 Citations (Scopus)

Using the gut microbiota as a novel tool for examining colobine primate GI health

Amato, K. R., Metcalf, J. L., Song, S. J., Hale, V. L., Clayton, J., Ackermann, G., Humphrey, G., Niu, K., Cui, D., Zhao, H., Schrenzel, M. D., Tan, C. L., Knight, R. & Braun, J., Jul 1 2016, In : Global Ecology and Conservation. 7, p. 225-237 13 p.

Research output: Contribution to journalArticle

intestinal microorganisms
primate
relative abundance
Primates
captive population
2015
16 Citations (Scopus)
Cecum
Microbiota
penicillins
Turkey
Ileum
2014
1 Citation (Scopus)

Longitudinal characterization of Escherichia coli in healthy captive non-human primates

Clayton, J. B., Danzeisen, J. L., Trent, A. M., Murphy, T. & Johnson, T. J., Nov 17 2014, In : Frontiers in Veterinary Science. 1, NOV, 24.

Research output: Contribution to journalArticle

Primates
Escherichia coli
zoos
Diarrhea
diarrhea
2011
2 Citations (Scopus)

Dietary choices by four captive slender lorises (Loris tardigradus) when presented with various insect life stages

Clayton, J. B. & Glander, K. E., Mar 1 2011, In : Zoo Biology. 30, 2, p. 189-198 10 p.

Research output: Contribution to journalArticle

Lorisidae
food choices
insects
Lemur
Zophobas atratus