John D Lipscomb

2019

Salicylate 5-Hydroxylase: Intermediates in Aromatic Hydroxylation by a Rieske Monooxygenase

Rogers, M. S. & Lipscomb, J. D., Dec 31 2019, In : Biochemistry. 58, 52, p. 5305-5319 15 p.

Research output: Contribution to journal › Article

1 Scopus citations

Soluble methane monooxygenase

Banerjee, R., Jones, J. C. & Lipscomb, J. D., Jun 20 2019, In : Annual Review of Biochemistry. 88, p. 409-431 23 p.

Research output: Contribution to journal › Article

7 Scopus citations

2018

Diiron monooxygenases in natural product biosynthesis

Komor, A. J., Jasniewski, A. J., Que, L. & Lipscomb, J. D., Jul 2018, In : Natural Product Reports. 35, 7, p. 646-659 14 p.

Research output: Contribution to journal › Review article

9 Scopus citations

High-Resolution Extended X-ray Absorption Fine Structure Analysis Provides Evidence for a Longer Fe···Fe Distance in the Q Intermediate of Methane Monooxygenase

Cutsail, G. E., Banerjee, R., Zhou, A., Que, L., Lipscomb, J. D. & Debeer, S., Dec 5 2018, In : Journal of the American Chemical Society. 140, 48, p. 16807-16820 14 p.

Research output: Contribution to journal › Article

13 Scopus citations

NRVS Studies of the Peroxide Shunt Intermediate in a Rieske Dioxygenase and Its Relation to the Native Fe^II O₂ Reaction

Sutherlin, K. D., Rivard, B. S., Böttger, L. H., Liu, L. V., Rogers, M. S., Srnec, M., Park, K., Yoda, Y., Kitao, S., Kobayashi, Y., Saito, M., Seto, M., Hu, M., Zhao, J., Lipscomb, J. D. & Solomon, E. I., Apr 25 2018, In : Journal of the American Chemical Society. 140, 16, p. 5544-5559 16 p.

Research output: Contribution to journal › Article

Open Access

6 Scopus citations

Nuclear Resonance Vibrational Spectroscopy Definition of O ₂ Intermediates in an Extradiol Dioxygenase: Correlation to Crystallography and Reactivity

Sutherlin, K. D., Wasada-Tsutsui, Y., mbughuni, M., Rogers, M., Park, K., Liu, L. V., Kwak, Y., Srnec, M., Böttger, L. H., Frenette, M., Yoda, Y., Kobayashi, Y., Kurokuzu, M., Saito, M., Seto, M., Hu, M., Zhao, J., Alp, E. E., Lipscomb, J. D. & Solomon, E. I., Dec 5 2018, In : Journal of the American Chemical Society. 140, 48, p. 16495-16513 19 p.

Research output: Contribution to journal › Article

3 Scopus citations

2017

CmlI N-Oxygenase Catalyzes the Final Three Steps in Chloramphenicol Biosynthesis without Dissociation of Intermediates

Komor, A. J., Rivard, B. S., Fan, R., Guo, Y., Que, L. & Lipscomb, J. D., Sep 19 2017, In : Biochemistry. 56, 37, p. 4940-4950 11 p.

Research output: Contribution to journal › Article

Open Access

4 Scopus citations

Corrigendum: Double-flow focused liquid injector for efficient serial femtosecond crystallography

Oberthuer, D., Knoška, J., Wiedorn, M. O., Beyerlein, K. R., Bushnell, D. A., Kovaleva, E. G., Heymann, M., Gumprecht, L., Kirian, R. A., Barty, A., Mariani, V., Tolstikova, A., Adriano, L., Awel, S., Barthelmess, M., Dörner, K., Xavier, P. L., Yefanov, O., James, D. R., Nelson, G. & 25 others, Wang, D., Calvey, G., Chen, Y., Schmidt, A., Szczepek, M., Frielingsdorf, S., Lenz, O., Snell, E., Robinson, P. J., Šarler, B., Belšak, G., Maček, M., Wilde, F., Aquila, A., Boutet, S., Liang, M., Hunter, M. S., Scheerer, P., Lipscomb, J. D., Weierstall, U., Kornberg, R. D., Spence, J. C. H., Pollack, L., Chapman, H. N. & Bajt, S., Jun 21 2017, In : Scientific reports. 7, 1 p.

Research output: Contribution to journal › Comment/debate

2 Scopus citations

Double-flow focused liquid injector for efficient serial femtosecond crystallography

Oberthuer, D., Knoška, J., Wiedorn, M. O., Beyerlein, K. R., Bushnell, D. A., Kovaleva, E. G., Heymann, M., Gumprecht, L., Kirian, R. A., Barty, A., Mariani, V., Tolstikova, A., Adriano, L., Awel, S., Barthelmess, M., Dörner, K., Xavier, P. L., Yefanov, O., James, D. R., Nelson, G. & 25 others, Wang, D., Calvey, G., Chen, Y., Schmidt, A., Szczepek, M., Frielingsdorf, S., Lenz, O., Snell, E., Robinson, P. J., Šarler, B., Belšak, G., Maček, M., Wilde, F., Aquila, A., Boutet, S., Liang, M., Hunter, M. S., Scheerer, P., Lipscomb, J. D., Weierstall, U., Kornberg, R. D., Spence, J. C. H., Pollack, L., Chapman, H. N. & Bajt, S., Mar 16 2017, In : Scientific reports. 7, 44628.

Research output: Contribution to journal › Article

Open Access

42 Scopus citations

Equilibrating (L)Fe^III-OOAc and (L)Fe^V(O) Species in Hydrocarbon Oxidations by Bio-Inspired Nonheme Iron Catalysts Using H₂O₂ and AcOH

Oloo, W. N., Banerjee, R., Lipscomb, J. D. & Que, L., Dec 6 2017, In : Journal of the American Chemical Society. 139, 48, p. 17313-17326 14 p.

Research output: Contribution to journal › Article

Open Access

21 Scopus citations

Erratum: Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria (Cell Chemical Biology (2017) 24(10) (1259–1275.e6) (S2451945617302830)(10.1016/j.chembiol.2017.08.009))

Guo, Z., Sevrioukova, I. F., Denisov, I. G., Zhang, X., Chiu, T. L., Thomas, D. G., Hanse, E. A., Cuellar, R. A. D., Grinkova, Y. V., Langenfeld, V. W., Swedien, D. S., Stamschror, J. D., Alvarez, J., Luna, F., Galván, A., Bae, Y. K., Wulfkuhle, J. D., Gallagher, R. I., Petricoin, E. F., Norris, B. & 17 others, Flory, C. M., Schumacher, R. J., O'Sullivan, M. G., Cao, Q., Chu, H., Lipscomb, J. D., Atkins, W. M., Gupta, K., Kelekar, A., Blair, I. A., Capdevila, J. H., Falck, J. R., Sligar, S. G., Poulos, T. L., Georg, G. I., Ambrose, E. & Potter, D. A., Oct 19 2017, In : Cell Chemical Biology. 24, 10, 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

3 Scopus citations

Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria

Guo, Z., Sevrioukova, I. F., Denisov, I. G., Zhang, X., Chiu, T. L., Thomas, D. G., Hanse, E. A., Cuellar, R. A. D., Grinkova, Y. V., Langenfeld, V. W., Swedien, D. S., Stamschror, J. D., Alvarez, J., Luna, F., Galván, A., Bae, Y. K., Wulfkuhle, J. D., Gallagher, R. I., Petricoin, E. F., Norris, B. & 17 others, Flory, C. M., Schumacher, R. J., O'Sullivan, M. G., Cao, Q., Chu, H., Lipscomb, J. D., Atkins, W. M., Gupta, K., Kelekar, A., Blair, I. A., Capdevila, J. H., Falck, J. R., Sligar, S. G., Poulos, T. L., Georg, G. I., Ambrose, E. & Potter, D. A., Oct 19 2017, In : Cell Chemical Biology. 24, 10, p. 1259-1275.e6

Research output: Contribution to journal › Article

Open Access

4 Scopus citations

High-Energy-Resolution Fluorescence-Detected X-ray Absorption of the Q Intermediate of Soluble Methane Monooxygenase

Castillo, R. G., Banerjee, R., Allpress, C. J., Rohde, G. T., Bill, E., Que, L., Lipscomb, J. D. & DeBeer, S., Dec 13 2017, In : Journal of the American Chemical Society. 139, 49, p. 18024-18033 10 p.

Research output: Contribution to journal › Article

Open Access

26 Scopus citations

Rational Optimization of Mechanism-Based Inhibitors through Determination of the Microscopic Rate Constants of Inactivation

Eiden, C. G., Maize, K. M., Finzel, B. C., Lipscomb, J. D. & Aldrich, C. C., May 31 2017, In : Journal of the American Chemical Society. 139, 21, p. 7132-7135 4 p.

Research output: Contribution to journal › Article

Open Access

2 Scopus citations

Unprecedented (μ-1,1-Peroxo)diferric Structure for the Ambiphilic Orange Peroxo Intermediate of the Nonheme N-Oxygenase CmlI

Jasniewski, A. J., Komor, A. J., Lipscomb, J. D. & Que, L., Aug 2 2017, In : Journal of the American Chemical Society. 139, 30, p. 10472-10485 14 p.

Research output: Contribution to journal › Article

Open Access

10 Scopus citations

Use of Isotopes and Isotope Effects for Investigations of Diiron Oxygenase Mechanisms

Banerjee, R., Komor, A. J. & Lipscomb, J. D., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 239-290 52 p. (Methods in Enzymology; vol. 596).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

5 Scopus citations

2016

A Carboxylate Shift Regulates Dioxygen Activation by the Diiron Nonheme β-Hydroxylase CmlA upon Binding of a Substrate-Loaded Nonribosomal Peptide Synthetase

Jasniewski, A. J., Knoot, C., Lipscomb, J. D. & Que, L., Oct 18 2016, In : Biochemistry. 55, 41, p. 5818-5831 14 p.

Research output: Contribution to journal › Article

5 Scopus citations

Crystal structure of CmlI, the arylamine oxygenase from the chloramphenicol biosynthetic pathway

Knoot, C. J., Kovaleva, E. G. & Lipscomb, J. D., Sep 1 2016, In : Journal of Biological Inorganic Chemistry. 21, 5-6, p. 589-603 15 p.

Research output: Contribution to journal › Article

23 Scopus citations

Enzyme Substrate Complex of the H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Mössbauer and Computational Studies

Meier, K. K., Rogers, M. S., Kovaleva, E. G., Lipscomb, J. D., Bominaar, E. L. & Münck, E., Jun 20 2016, In : Inorganic chemistry. 55, 12, p. 5862-5870 9 p.

Research output: Contribution to journal › Article

3 Scopus citations

Mechanism for Six-Electron Aryl-N-Oxygenation by the Non-Heme Diiron Enzyme CmlI

Komor, A. J., Rivard, B. S., Fan, R., Guo, Y., Que, L. & Lipscomb, J. D., Jun 15 2016, In : Journal of the American Chemical Society. 138, 23, p. 7411-7421 11 p.

Research output: Contribution to journal › Article

18 Scopus citations

2015

A long-lived Fe^III-(hydroperoxo) intermediate in the active H200C variant of homoprotocatechuate 2,3-dioxygenase: Characterization by mössbauer, electron paramagnetic resonance, and density functional theory methods

Meier, K. K., Rogers, M. S., Kovaleva, E. G., Mbughuni, M. M., Bominaar, E. L., Lipscomb, J. D. & Münck, E., Nov 2 2015, In : Inorganic Chemistry. 54, 21, p. 10269-10280 12 p.

Research output: Contribution to journal › Article

12 Scopus citations

An unusual peroxo intermediate of the arylamine oxygenase of the chloramphenicol biosynthetic pathway

Makris, T. M., Vu, V. V., Meier, K. K., Komor, A. J., Rivard, B. S., Münck, E., Que, L. & Lipscomb, J. D., Feb 4 2015, In : Journal of the American Chemical Society. 137, 4, p. 1608-1617 10 p.

Research output: Contribution to journal › Article

35 Scopus citations

Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase

Knoot, C. J., Purpero, V. M. & Lipscomb, J. D., Jan 13 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 2, p. 388-393 6 p.

Research output: Contribution to journal › Article

17 Scopus citations

Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase

Rivard, B. S., Rogers, M., Marell, D. J., Neibergall, M. B., Chakrabarty, S., Cramer, C. & Lipscomb, J. D., Aug 4 2015, In : Biochemistry. 54, 30, p. 4652-4664 13 p.

Research output: Contribution to journal › Article

20 Scopus citations

Structural Basis for Substrate and Oxygen Activation in Homoprotocatechuate 2,3-Dioxygenase: Roles of Conserved Active Site Histidine 200

Kovaleva, E. G., Rogers, M. S. & Lipscomb, J. D., Sep 1 2015, In : Biochemistry. 54, 34, p. 5329-5339 11 p.

Research output: Contribution to journal › Article

16 Scopus citations

Structure of the key species in the enzymatic oxidation of methane to methanol

Banerjee, R., Proshlyakov, Y., Lipscomb, J. D. & Proshlyakov, D. A., Feb 19 2015, In : Nature. 518, 7539, p. 431-434 4 p.

Research output: Contribution to journal › Article

107 Scopus citations

2014

A two-electron-shell game: Intermediates of the extradiol-cleaving catechol dioxygenases Topical Issue in honor of Ivano Bertini. Guest editors: Lucia Banci, Claudio Luchinat

Fielding, A. J., Lipscomb, J. D. & Que, L., 2014, In : Journal of Biological Inorganic Chemistry. 19, 4-5, p. 491-504 14 p.

Research output: Contribution to journal › Review article

28 Scopus citations

Catalase (KatA) Plays a role in protection against anaerobic nitric oxide in Pseudomonas aeruginosa

Su, S., Panmanee, W., Wilson, J. J., Mahtani, H. K., Li, Q., VanderWielen, B. D., Makris, T. M., Rogers, M., McDaniel, C., Lipscomb, J. D., Irvin, R. T., Schurr, M. J., Lancaster, J. R., Kovall, R. A. & Hassett, D. J., Mar 24 2014, In : PloS one. 9, 3, e91813.

Research output: Contribution to journal › Article

21 Scopus citations

Life in a Sea of Oxygen

Lipscomb, J. D., May 30 2014, In : Journal of Biological Chemistry. 289, 22, p. 15141-15153 13 p.

Research output: Contribution to journal › Article

2 Scopus citations

2013

Cyanobacterial aldehyde deformylase oxygenation of aldehydes yields n - 1 aldehydes and alcohols in addition to alkanes

Aukema, K. G., Makris, T. M., Stoian, S. A., Richman, J. E., Münck, E., Lipscomb, J. D. & Wackett, L. P., Oct 4 2013, In : ACS Catalysis. 3, 10, p. 2228-2238 11 p.

Research output: Contribution to journal › Article

34 Scopus citations

Intermediate P* from soluble methane monooxygenase contains a diferrous cluster

Banerjee, R., Meier, K. K., Münck, E. & Lipscomb, J. D., Jun 25 2013, In : Biochemistry. 52, 25, p. 4331-4342 12 p.

Research output: Contribution to journal › Article

28 Scopus citations

NO binding to Mn-substituted homoprotocatechuate 2,3-dioxygenase: Relationship to O₂ reactivity

Hayden, J. A., Farquhar, E. R., Que, L., Lipscomb, J. D. & Hendrich, M. P., Oct 1 2013, In : Journal of Biological Inorganic Chemistry. 18, 7, p. 717-728 12 p.

Research output: Contribution to journal › Article

6 Scopus citations

Structure of a dinuclear iron cluster-containing β-hydroxylase active in antibiotic biosynthesis

Makris, T. M., Knoot, C. J., Wilmot, C. M. & Lipscomb, J. D., Sep 24 2013, In : Biochemistry. 52, 38, p. 6662-6671 10 p.

Research output: Contribution to journal › Article

22 Scopus citations

2012

Characterization of an O ₂ adduct of an active cobalt-substituted extradiol-cleaving catechol dioxygenase

Fielding, A. J., Lipscomb, J. D. & Que, L., Jan 18 2012, In : Journal of the American Chemical Society. 134, 2, p. 796-799 4 p.

Research output: Contribution to journal › Article

31 Scopus citations

Structural and molecular characterization of iron-sensing hemerythrin-like domain within F-box and leucine-rich repeat protein 5 (FBXL5)

Thompson, J. W., Salahudeen, A. A., Chollangi, S., Ruiz, J. C., Brautigam, C. A., Makris, T. M., Lipscomb, J. D., Tomchick, D. R. & Bruick, R. K., Mar 2 2012, In : Journal of Biological Chemistry. 287, 10, p. 7357-7365 9 p.

Research output: Contribution to journal › Article

43 Scopus citations

Structural basis for the role of tyrosine 257 of homoprotocatechuate 2,3-dioxygenase in substrate and oxygen activation

Kovaleva, E. G. & Lipscomb, J. D., Nov 6 2012, In : Biochemistry. 51, 44, p. 8755-8763 9 p.

Research output: Contribution to journal › Article

23 Scopus citations

Substrate-mediated oxygen activation by homoprotocatechuate 2,3-dioxygenase: Intermediates formed by a tyrosine 257 variant

Mbughuni, M. M., Meier, K. K., Münck, E. & Lipscomb, J. D., Nov 6 2012, In : Biochemistry. 51, 44, p. 8743-8754 12 p.

Research output: Contribution to journal › Article

28 Scopus citations

2011

Active-site structure of a β-hydroxylase in antibiotic biosynthesis

Vu, V. V., Makris, T. M., Lipscomb, J. D. & Que, L., May 11 2011, In : Journal of the American Chemical Society. 133, 18, p. 6938-6941 4 p.

Research output: Contribution to journal › Article

14 Scopus citations

A hyperactive cobalt-substituted extradiol-cleaving catechol dioxygenase

Fielding, A. J., Kovaleva, E. G., Farquhar, E. R., Lipscomb, J. D. & Que, L., Feb 1 2011, In : Journal of Biological Inorganic Chemistry. 16, 2, p. 341-355 15 p.

Research output: Contribution to journal › Article

59 Scopus citations

Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: Facile electron transfer between substrates

Mbughuni, M. M., Chakrabarti, M., Hayden, J. A., Meier, K. K., Dalluge, J. J., Hendrich, M. P., Münck, E. & Lipscomb, J. D., Nov 29 2011, In : Biochemistry. 50, 47, p. 10262-10274 13 p.

Research output: Contribution to journal › Article

38 Scopus citations

2010

A family of diiron monooxygenases catalyzing amino acid beta-hydroxylation in antibiotic biosynthesis

Makris, T. M., Chakrabarti, M., Münck, E. & Lipscomb, J. D., Aug 31 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 35, p. 15391-15396 6 p.

Research output: Contribution to journal › Article

47 Scopus citations

Trapping and spectroscopic characterization of an Fe^III-superoxo intermediate from a nonheme mononuclear iron-containing enzyme

Mbughuni, M. M., Chakrabarti, M., Hayden, J. A., Bominaar, E. L., Hendrich, M. P., Münck, E. & Lipscomb, J. D., Sep 28 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 39, p. 16788-16793 6 p.

Research output: Contribution to journal › Article

107 Scopus citations

2008

CD and MCD studies of the effects of component B variant binding on the biferrous active site of methane monooxygenase

Mitić, N., Schwartz, J. K., Brazeau, B. J., Lipscomb, J. D. & Solomon, E. I., Aug 12 2008, In : Biochemistry. 47, 32, p. 8386-8397 12 p.

Research output: Contribution to journal › Article

23 Scopus citations

Electron paramagnetic resonance detection of intermediates in the enzymatic cycle of an extradiol dioxygenase

Gunderson, W. A., Zatsman, A. I., Emerson, J. P., Farquhar, E. R., Que, L., Lipscomb, J. D. & Hendrich, M. P., Nov 5 2008, In : Journal of the American Chemical Society. 130, 44, p. 14465-14467 3 p.

Research output: Contribution to journal › Article

62 Scopus citations

Intermediate in the O-O bond cleavage reaction of an extradiol dioxygenase

Kovaleva, E. G. & Lipscomb, J. D., Oct 28 2008, In : Biochemistry. 47, 43, p. 11168-11170 3 p.

Research output: Contribution to journal › Article

45 Scopus citations

Intermediates in the reaction cycle of methane monooxygenase: Structure and chemistry

Lipscomb, J. D., Lee, S. K., Nesheim, J. C., Jin, Y., Wallar, B. J. & Zhang, X. Y., Jan 2 2008, Iron Metabolism: Inorganic Biochemistry and Regulatory Mechanisms. Wiley, p. 323-339 17 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Mechanism of extradiol aromatic ring-cleaving dioxygenases

Lipscomb, J. D., Dec 1 2008, In : Current Opinion in Structural Biology. 18, 6, p. 644-649 6 p.

Research output: Contribution to journal › Review article

112 Scopus citations

Near-IR MCD of the nonheme ferrous active site in naphthalene 1,2-dioxygenase: Correlation to crystallography and structural insight into the mechanism of rieske dioxygenases

Ohta, T., Chakrabarty, S., Lipscomb, J. D. & Solomon, E. I., Feb 6 2008, In : Journal of the American Chemical Society. 130, 5, p. 1601-1610 10 p.

Research output: Contribution to journal › Article

23 Scopus citations

Substrate activation for O2 reactions by oxidized metal centers in biology (Proceedings of the National Academy of Sciences of the United States of America (November 20, 2007) 104, 47, (18355-18362) doi:10.1073/pnas. 0704191104)

Pau, M. Y. M., Lipscomb, J. D. & Solomon, E. I., Jan 22 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 3, 1 p.

Research output: Contribution to journal › Comment/debate

Swapping metals in Fe- and Mn-dependent dioxygenases: Evidence for oxygen activation without a change in metal redox state

Emerson, J. P., Kovaleva, E. G., Farquhar, E. R., Lipscomb, J. D. & Que, L., May 27 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 21, p. 7347-7352 6 p.

Research output: Contribution to journal › Article

86 Scopus citations