1982 …2022
If you made any changes in Pure, your changes will be visible here soon.

Research Output 1982 2019

2019

metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes

Easterly, C. W., Sajulga, R., Mehta, S., Johnson, J. E., Kumar, P., Hubler, S., Mesuere, B., Rudney, J. D., Griffin, T. J. & Jagtap, P. D., Aug 9 2019, In : Molecular & cellular proteomics : MCP. 18, 8, p. S82-S91

Research output: Contribution to journalArticle

Open Access
Microbiota
Taxonomies
Benchmarking
Proteins
Galaxies
2018
Open Access
Dimercaprol
Respiratory Insufficiency
Fluids
10 Citations (Scopus)

Disseminating metaproteomic informatics capabilities and knowledge using the galaxy-P framework

Blank, C., Easterly, C., Gruening, B., Johnson, J., Kolmeder, C. A., Kumar, P., May, D., Mehta, S., Mesuere, B., Brown, Z., Elias, J. E., Hervey, W. J., McGowan, T., Muth, T., Nunn, B. L., Rudney, J., Tanca, A., Griffin, T. J. & Jagtap, P. D., Mar 1 2018, In : Proteomes. 6, 1, 7.

Research output: Contribution to journalArticle

Open Access
Galaxies
Informatics
Workflow
Software
Microbiota
Open Access
Papanicolaou Test
Microbiota
Fixatives
Protein Databases
Proteins
2017
1 Citation (Scopus)
Open Access
Biofilms
Adhesives
Tooth
Sucrose
Third Molar
2016
15 Citations (Scopus)

Antimicrobial agents used in the treatment of peri-implantitis alter the physicochemistry and cytocompatibility of titanium surfaces

Kotsakis, G. A., Lan, C., Barbosa, J., Lill, K., Chen, R., Rudney, J. D. & Aparicio, C., Jul 1 2016, In : Journal of periodontology. 87, 7, p. 809-819 11 p.

Research output: Contribution to journalArticle

Peri-Implantitis
Anti-Infective Agents
Titanium
Decontamination
Therapeutics
7 Citations (Scopus)

Dentin-composite bond strength measurement using the Brazilian disk test

Carrera, C. A., Chen, Y. C., Li, Y., Rudney, J. D., Aparicio, C. & Fok, A., Sep 1 2016, In : Journal of Dentistry. 52, p. 37-44 8 p.

Research output: Contribution to journalArticle

Dentin
Adhesives
Composite Resins
Acoustics
Electron Scanning Microscopy
2015
4 Citations (Scopus)

Fatigue failure of dentin-composite disks subjected to cyclic diametral compression

Li, Y., Carrera, C., Chen, R., Li, J., Chen, Y-C., Lenton, P. A., Rudney, J. D., Jones, R. S., Aparicio, C. & Fok, A., Jan 1 2015, In : Dental Materials. 31, 7, p. 778-788 11 p.

Research output: Contribution to journalArticle

Dentin
Fatigue
Tooth
Compaction
Fatigue of materials
32 Citations (Scopus)

Metaproteomic analysis using the Galaxy framework

Jagtap, P. D., Blakely, A., Murray, K., Stewart, S., Kooren, J., Johnson, J. E., Rhodus, N. L., Rudney, J. D. & Griffin, T. J., Oct 1 2015, In : Proteomics. 15, 20, p. 3553-3565 13 p.

Research output: Contribution to journalArticle

Galaxies
Workflow
Proteins
Blueprints
Protein Databases
32 Citations (Scopus)

The use of micro-CT with image segmentation to quantify leakage in dental restorations

Carrera, C. A., Lan, C., Escobar-Sanabria, D., Li, Y., Rudney, J., Aparicio, C. & Fok, A., Apr 1 2015, In : Dental Materials. 31, 4, p. 382-390 9 p.

Research output: Contribution to journalArticle

Dental Leakage
Silver Nitrate
Image segmentation
Restoration
Tomography
2014
13 Citations (Scopus)
Optical Coherence Tomography
Dental Enamel
Composite Resins
Deciduous Tooth
Composite Dental Resin
35 Citations (Scopus)

Degradation in the dentin-composite interface subjected to multi-species biofilm challenges

Li, Y., Carrera, C., Chen, R., Li, J., Lenton, P. A., Rudney, J. D., Jones, R. S., Aparicio, C. & Fok, A., Jan 1 2014, In : Acta Biomaterialia. 10, 1, p. 375-383 9 p.

Research output: Contribution to journalArticle

Biofilms
Dentin
Degradation
Composite materials
Sugar (sucrose)
2012
11 Citations (Scopus)

A novel dentin bond strength measurement technique using a composite disk in diametral compression

Huang, S. H., Lin, L. S., Rudney, J., Jones, R., Aparicio, C., Lin, C. P. & Fok, A., Apr 1 2012, In : Acta Biomaterialia. 8, 4, p. 1597-1602 6 p.

Research output: Contribution to journalArticle

Dentin
Acoustic emissions
Compaction
Resins
Specimen preparation
46 Citations (Scopus)

A reproducible oral microcosm biofilm model for testing dental materials

Rudney, J. D., Chen, R., Lenton, P. A., Li, J., Li, Y., Jones, R. S., Reilly, C. S., Fok, A. & Aparicio, C., Dec 1 2012, In : Journal of Applied Microbiology. 113, 6, p. 1540-1553 14 p.

Research output: Contribution to journalArticle

Dental Materials
Biofilms
Saliva
Sucrose
Durapatite
2 Citations (Scopus)

Assessing ex vivo dental biofilms and in vivo composite restorations using cross-polarization optical coherence tomography

Jones, R., Aparicio, C., Chityala, R., Chen, R., Fok, A., Rudney, J. & Jones, R. S., Jun 12 2012, Lasers in Dentistry XVIII. 82080A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8208).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

biofilms
Optical tomography
cross polarization
Optical Coherence Tomography
Biofilms
52 Citations (Scopus)

Deep metaproteomic analysis of human salivary supernatant

Jagtap, P. D., Mcgowan, T., Bandhakavi, S., Tu, Z. J., Seymour, S., Griffin, T. J. & Rudney, J. D., Apr 1 2012, In : Proteomics. 12, 7, p. 992-1001 10 p.

Research output: Contribution to journalArticle

Proteome
Peptides
Proteins
Mouth Diseases
Selenomonas
46 Citations (Scopus)

Imaging in vivo secondary caries and ex vivo dental biofilms using cross-polarization optical coherence tomography

Lenton, P. A., Rudney, J. D., Chen, R., Fok, A., Aparicio, C. & Jones, R. S., Jul 1 2012, In : Dental Materials. 28, 7, p. 792-800 9 p.

Research output: Contribution to journalArticle

Optical tomography
Optical Coherence Tomography
Biofilms
Tooth
Polarization
17 Citations (Scopus)
Synthetic Resins
Optical tomography
cross polarization
resins
Resins
15 Citations (Scopus)

Quantifying dental biofilm growth using cross-polarization optical coherence tomography

Chen, R., Rudney, J. D., Aparicio, C., Fok, A. & Jones, R. S., Jun 1 2012, In : Letters in Applied Microbiology. 54, 6, p. 537-542 6 p.

Research output: Contribution to journalArticle

Optical Coherence Tomography
Biofilms
Tooth
Growth
Gentian Violet
2011
9 Citations (Scopus)
Fusobacterium nucleatum
Streptococcus
Cytokines
Toll-Like Receptors
Reverse Transcription
13 Citations (Scopus)
Fusobacterium nucleatum
NF-kappa B
Streptococcus
Interleukin-8
Enzyme-Linked Immunosorbent Assay
2010
50 Citations (Scopus)
Microbiota
Tandem Mass Spectrometry
Metagenomics
Peptides
Archaea
2009
44 Citations (Scopus)

Potential biomarkers of human salivary function: A modified proteomic approach

Rudney, J. D., Staikov, R. K. & Johnson, J. D., Jan 1 2009, In : Archives of Oral Biology. 54, 1, p. 91-100 10 p.

Research output: Contribution to journalArticle

Salivary Cystatins
Streptococcus
Least-Squares Analysis
Proteomics
Mouth Diseases
2008
57 Citations (Scopus)

Persistence of extracrevicular bacterial reservoirs after treatment of aggressive periodontitis

Johnson, J. D., Chen, R., Lenton, P. A., Zhang, G., Hinrichs, J. E. & Rudney, J. D., Dec 1 2008, In : Journal of periodontology. 79, 12, p. 2305-2312 8 p.

Research output: Contribution to journalArticle

Aggressive Periodontitis
Epithelial Cells
Treponema denticola
Root Planing
Aggregatibacter actinomycetemcomitans
20 Citations (Scopus)

Streptococcus cristatus attenuates Fusobacterium nucleatum-induced interleukin-8 expression in oral epithelial cells

Zhang, G., Chen, R. & Rudney, J. D., Aug 1 2008, In : Journal of Periodontal Research. 43, 4, p. 408-416 9 p.

Research output: Contribution to journalArticle

Fusobacterium nucleatum
Streptococcus
Interleukin-8
Epithelial Cells
Reverse Transcription
2007
19 Citations (Scopus)
Fusobacterium nucleatum
Secretory Immunoglobulin A
Streptococcus
Arginine
Carrier Proteins
2006
Fusobacterium nucleatum
Streptococcus
Immunity
Epithelial Cells
Infection
60 Citations (Scopus)

Fusobacterium nucleatum transports noninvasive Streptococcus cristatus into human epithelial cells

Edwards, A. M., Grossman, T. J. & Rudney, J. D., Jan 1 2006, In : Infection and immunity. 74, 1, p. 654-662 9 p.

Research output: Contribution to journalArticle

Fusobacterium nucleatum
Streptococcus
Epithelial Cells
Bacteria
KB Cells
26 Citations (Scopus)

Oral bacteria in plaque and invading buccal cells of young orthodontic patients

Leung, N. M., Chen, R. & Rudney, J. D., Dec 1 2006, In : American Journal of Orthodontics and Dentofacial Orthopedics. 130, 6

Research output: Contribution to journalArticle

Cheek
Orthodontics
Bacteria
Aggregatibacter actinomycetemcomitans
Epithelial Cells
31 Citations (Scopus)

The vital status of human buccal epithelial cells and the bacteria associated with them

Rudney, J. D. & Chen, R., Apr 1 2006, In : Archives of Oral Biology. 51, 4, p. 291-298 8 p.

Research output: Contribution to journalArticle

Cheek
Epithelial Cells
Bacteria
Coloring Agents
Propidium
2005
113 Citations (Scopus)
Aggregatibacter actinomycetemcomitans
Porphyromonas gingivalis
Cheek
Bacteria
Microbial Consortia
50 Citations (Scopus)

Streptococci dominate the diverse flora within buccal cells

Rudney, J. D., Chen, R. & Zhang, G., Dec 1 2005, In : Journal of Dental Research. 84, 12, p. 1165-1171 7 p.

Research output: Contribution to journalArticle

Cheek
Streptococcus
Gemella
Eikenella corrodens
Epithelial Cells
2004
Biofilms
5 Citations (Scopus)
Cheek
Biofilms
Aggregatibacter actinomycetemcomitans
Porphyromonas gingivalis
Incisor
2003
24 Citations (Scopus)

Endpoint quantitative PCR assays for Bacteroides forsythus, Porphyromonas gingivalis, and Actinobacillus actinomycetemcomitans

Rudney, J. D., Chen, R. & Pan, Y., Oct 1 2003, In : Journal of Periodontal Research. 38, 5, p. 465-470 6 p.

Research output: Contribution to journalArticle

Aggregatibacter actinomycetemcomitans
Porphyromonas gingivalis
Polymerase Chain Reaction
Fluorescence
Dental Students
29 Citations (Scopus)

Streptococcal diversity in oral biofilms with respect to salivary function

Rudney, J. D., Pan, Y. & Chen, R., Jul 1 2003, In : Archives of Oral Biology. 48, 7, p. 475-493 19 p.

Research output: Contribution to journalArticle

Biofilms
Streptococcus
Cheek
Incisor
Tongue
2002
1 Citation (Scopus)

Salivary CA130 with and without unilateral autonomic parotid denervation of rats fed different diets

Johnson-Alvares, D., Cornelissen-Guillaume, G. G., Portela, A., Halberg, E., Rudney, J. D., Yeh, C. K., Dodds, M., Haus, E., Schaffer, E., Blank, M. & Halberg, F., May 6 2002, In : In Vivo. 16, 1, p. 25-28 4 p.

Research output: Contribution to journalArticle

Autonomic Denervation
Nutrition
Saliva
Rats
Tumor Biomarkers
13 Citations (Scopus)
Stomatognathic Diseases
Aggregatibacter actinomycetemcomitans
Streptococcus mutans
Periodontal Diseases
Streptococcus
2001
137 Citations (Scopus)

Intracellular Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis in buccal epithelial cells collected from human subjects

Rudney, J. D., Chen, R. & Sedgewick, G. J., Apr 5 2001, In : Infection and immunity. 69, 4, p. 2700-2707 8 p.

Research output: Contribution to journalArticle

Aggregatibacter actinomycetemcomitans
Porphyromonas gingivalis
Cheek
Epithelial Cells
Fluorescence In Situ Hybridization
55 Citations (Scopus)
Chronic Periodontitis
Periodontitis
Porphyromonas gingivalis
Population
Longitudinal Studies
2000
4 Citations (Scopus)

Effects of Streptococcus crista and human saliva on the viability of Fusobacterium nucleatum ATCC 10953

Rudney, J. D. & Strait, C. A., Aug 1 2000, In : Archives of Oral Biology. 45, 8, p. 667-674 8 p.

Research output: Contribution to journalArticle

Fusobacterium nucleatum
Streptococcus
Saliva
Buffers
Fusobacteria
51 Citations (Scopus)

Saliva and dental plaque.

Rudney, J. D., Jan 1 2000, In : Advances in dental research. 14, p. 29-39 11 p.

Research output: Contribution to journalReview article

Dental Plaque
Biofilms
Saliva
Salivary Proteins and Peptides
Microbial Consortia
38 Citations (Scopus)

The presurgical status of the alveolar cleft and success of secondary bone grafting

Aurouze, C., Moller, K. T., Bevis, R. R., Rehm, K. & Rudney, J., Jan 1 2000, In : Cleft Palate-Craniofacial Journal. 37, 2, p. 179-184 6 p.

Research output: Contribution to journalArticle

Bone Transplantation
Alveolar Bone Grafting
Cleft Palate
Bone and Bones
Tooth
1999
30 Citations (Scopus)
Viridans Streptococci
Amylases
Muramidase
Saliva
Immunoglobulin A
18 Citations (Scopus)

Identification of oral mitis group streptococci by arbitrarily primed polymerase chain reaction

Rudney, J. D. & Larson, C. J., Feb 1 1999, In : Oral Microbiology and Immunology. 14, 1, p. 33-42 10 p.

Research output: Contribution to journalArticle

Streptococcus mitis
Streptococcus oralis
Streptococcus gordonii
Streptococcus sanguis
Polymerase Chain Reaction
120 Citations (Scopus)
Aggregatibacter actinomycetemcomitans
Porphyromonas gingivalis
Multiplex Polymerase Chain Reaction
rRNA Genes
Periodontitis
1998
16 Citations (Scopus)

Comparing traditional lecture vs. computer-based instruction for oral anatomy.

Bachman, M. W., Lua, M. J., Clay, D. J. & Rudney, J. D., Aug 1998, In : Journal of dental education. 62, 8, p. 587-591 5 p.

Research output: Contribution to journalArticle

Regional Anatomy
Computer-Assisted Instruction
Educational Measurement
Dental Education
Incisor
19 Citations (Scopus)

s-IgA and cytokine levels in whole saliva of Sjögren's syndrome patients before and after oral pilocarpine hydrochloride administration: a pilot study.

Rhodus, N. L., Dahmer, L., Lindemann, K., Rudney, J. D., Mathur, A. & Bereuter, J., Jan 1 1998, In : Clinical oral investigations. 2, 4, p. 191-196 6 p.

Research output: Contribution to journalArticle

Pilocarpine
Saliva
Immunoglobulin A
Cytokines
Interleukin-2
1996
84 Citations (Scopus)
Aggregatibacter actinomycetemcomitans
Porphyromonas gingivalis
Multiplex Polymerase Chain Reaction
rRNA Genes
Flour