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Research Output 2010 2019

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Article
2019

Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

Wu, B., Gaskell, J., Zhang, J., Toapanta, C., Ahrendt, S., Grigoriev, I. V., Blanchette, R. A., Schilling, J. S., Master, E., Cullen, D. & Hibbett, D. S., Jun 1 2019, In : ISME Journal. 13, 6, p. 1391-1403 13 p.

Research output: Contribution to journalArticle

RNA Editing
RNA editing
decay fungi
gene expression
RNA
Decay (organic)
Fungi
Fluorescence In Situ Hybridization
Gene expression
gene expression

Gene regulation shifts shed light on fungal adaption in plant biomass decomposers

Zhang, J., Silverstein, K. A. T., Castaño, J. D., Figueroa, M. & Schilling, J. S., Nov 1 2019, In : mBio. 10, 6, e02176-19.

Research output: Contribution to journalArticle

Open Access
Biomass
Fungi
Reactive Oxygen Species
Genes
Carbohydrates
1 Citation (Scopus)

Reference genes for accurate normalization of gene expression in wood-decomposing fungi

Zhang, J., Mitchell, H. D., Markillie, L. M., Gaffrey, M. J., Orr, G. & Schilling, J. S., Feb 2019, In : Fungal Genetics and Biology. 123, p. 33-40 8 p.

Research output: Contribution to journalArticle

Fungi
Gene Expression
Genes
Carbon
Fungal Genes
2018
10 Citations (Scopus)

A genomics-informed study of oxalate and cellulase regulation by brown rot wood-degrading fungi

Presley, G. N., Zhang, J. & Schilling, J. S., Mar 2018, In : Fungal Genetics and Biology. 112, p. 64-70 7 p.

Research output: Contribution to journalArticle

Oxalates
Cellulase
Genomics
Fungi
oxalate decarboxylase
3 Citations (Scopus)
Plant Cells
Cell Wall
Hydrogen Peroxide
Limit of Detection
Reactive Oxygen Species
2 Citations (Scopus)

Oxidative damage control during decay of wood by brown rot fungus using oxygen radicals

Castaño, J. D., Zhang, J., Anderson, C. E. & Schilling, J. S., Nov 1 2018, In : Applied and environmental microbiology. 84, 22, e01937-18.

Research output: Contribution to journalArticle

brown-rot fungi
decayed wood
hydroxyl radicals
hydroxyl radical
Hydroxyl Radical
2 Citations (Scopus)

Substrate-specific differential gene expression and RNA editing in the brown rot fungus Fomitopsis pinicola

Wu, B., Gaskell, J., Held, B. W., Toapanta, C., Vuong, T., Ahrendt, S., Lipzen, A., Zhang, J., Schilling, J. S., Master, E., Grigoriev, I. V., Blanchette, R. A., Cullen, D. & Hibbett, D. S., Aug 1 2018, In : Applied and environmental microbiology. 84, 16, e00991-18.

Research output: Contribution to journalArticle

Fomitopsis pinicola
Coriolaceae
RNA Editing
brown-rot fungi
RNA editing
2017
13 Citations (Scopus)
Cellobiose
Placenta
Cellulase
Oxidoreductases
Carbon
2016
44 Citations (Scopus)

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta

Zhang, J., Presley, G. N., Hammel, K. E., Ryu, J. S., Menke, J. R., Figueroa, M., Hu, D., Orr, G. & Schilling, J. S., Sep 27 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 39, p. 10968-10973 6 p.

Research output: Contribution to journalArticle

Placenta
Reactive Oxygen Species
Fungi
Glycoside Hydrolases
Polygalacturonase
2015
86 Citations (Scopus)

Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing

Gordon, S. P., Tseng, E., Salamov, A., Zhang, J., Meng, X., Zhao, Z., Kang, D., Underwood, J., Grigoriev, I. V., Figueroa, M., Schilling, J. S., Chen, F. & Wang, Z., Jul 15 2015, In : PloS one. 10, 7, e0132628.

Research output: Contribution to journalArticle

Fungi
transcription (genetics)
Genes
Messenger RNA
Molecules
2014
17 Citations (Scopus)

Construction and direct electrochemistry of orientation controlled laccase electrode

Li, Y., Zhang, J., Huang, X. & Wang, T., Mar 28 2014, In : Biochemical and Biophysical Research Communications. 446, 1, p. 201-205 5 p.

Research output: Contribution to journalArticle

Electrochemistry
Laccase
Electrodes
Gold
Electrons
2012
22 Citations (Scopus)

Improved biomass saccharification by Trichoderma reesei through heterologous expression of lacA gene from Trametes sp. AH28-2

Zhang, J., Qu, Y., Xiao, P., Wang, X., Wang, T. & He, F., Jun 1 2012, In : Journal of Bioscience and Bioengineering. 113, 6, p. 697-703 7 p.

Research output: Contribution to journalArticle

Trametes
Saccharification
Laccase
Trichoderma
Biomass
11 Citations (Scopus)

Improved cellulase production via disruption of PDE01641 in cellulolytic fungus Penicillium decumbens

Zhang, Y., Zhang, J., Xiao, P., Wang, T. & Qu, Y., Nov 1 2012, In : Bioresource Technology. 123, p. 733-737 5 p.

Research output: Contribution to journalArticle

Cellulase
Fungi
fungus
enzyme
gene
31 Citations (Scopus)

Ras GTPases Modulate Morphogenesis, Sporulation and Cellulase Gene Expression in the Cellulolytic Fungus Trichoderma reesei

Zhang, J., Zhang, Y., Zhong, Y., Qu, Y. & Wang, T., Nov 9 2012, In : PloS one. 7, 11, e48786.

Research output: Contribution to journalArticle

ras Proteins
Trichoderma reesei
Trichoderma
Cellulase
guanosinetriphosphatase
2011
26 Citations (Scopus)

Optimal culture conditions for keratinase production by a novel thermophilic Myceliophthora thermophila strain GZUIFR-H49-1

Liang, J. D., Han, Y. F., Zhang, J. W., Du, W., Liang, Z. Q. & Li, Z. Z., Apr 1 2011, In : Journal of Applied Microbiology. 110, 4, p. 871-880 10 p.

Research output: Contribution to journalArticle

Fungi
Culture Media
Urea
Ribosomal DNA
keratinase
2010
75 Citations (Scopus)
Cellulose 1,4-beta-Cellobiosidase
Glucosidases
Fungi
gene expression
Cellulase