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James E Johnson

20002020

Research output per year

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Projects

A Galaxy-based multi-omic informatics hub for cancer res

Griffin, T. J., Hegeman, A. D., Jagtap, P. D., Johnson, J. E., Lynch, B. J. & Wennblom, T.

NIH NATIONAL CANCER INSTITUTE (NCI)

5/18/16 → 4/30/21

Project: Research project

    • Research Output

    A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases

    Kumar, P., Johnson, J. E., Easterly, C., Mehta, S., Sajulga, R., Nunn, B., Jagtap, P. D. & Griffin, T. J., Jul 2 2020, In : Journal of Proteome Research. 19, 7, p. 2772-2785 14 p.

    Research output: Contribution to journal › Article

    • Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits

    Hubler, S. L., Kumar, P., Mehta, S., Easterly, C., Johnson, J. E., Jagtap, P. D. & Griffin, T. J., Jan 3 2020, In : Journal of Proteome Research. 19, 1, p. 161-173 13 p.

    Research output: Contribution to journal › Article

    • Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

    Mcgowan, T., Johnson, J. E., Kumar, P., Sajulga, R., Mehta, S., Jagtap, P. D. & Griffin, T. J., Apr 6 2020, In : GigaScience. 9, 4, giaa025.

    Research output: Contribution to journal › Article

    Open Access

    • Identification of candidate neoantigens produced by fusion transcripts in human osteosarcomas

    Rathe, S. K., Popescu, F. E., Johnson, J. E., Watson, A. L., Marko, T. A., Moriarity, B. S., Ohlfest, J. R. & Largaespada, D. A., Dec 1 2019, In : Scientific reports. 9, 1, 358.

    Research output: Contribution to journal › Article

    Open Access
    • 15 Scopus citations

    MetaQuantome: An integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes

    Easterly, C. W., Sajulga, R., Mehta, S., Johnson, J., Kumar, P., Hubler, S., Mesuere, B., Rudney, J., Griffin, T. J. & Jagtap, P. D., Jan 1 2019, In : Molecular and Cellular Proteomics. 18, 8, p. S82-S91

    Research output: Contribution to journal › Article

    Open Access
    • 2 Scopus citations

    Press / Media

    Coronavirus Outbreak Exposes Faults in Antibiotics Pipeline

    James E Johnson

    2/26/20 → 2/27/20

    2 items of Media coverage

    Press/Media: Expert Comment