Jake Bailey

20052020
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Research Output 2005 2019

2019
1 Citation (Scopus)

Microbial communities associated with phosphogenic sediments and phosphoclast-associated DNA of the Benguela upwelling system

Zoss, R., Medina Ferrer, F., Flood, B. E., Jones, D. S., Louw, D. C. & Bailey, J., Jan 1 2019, In : Geobiology. 17, 1, p. 76-90 15 p.

Research output: Contribution to journalArticle

microbial communities
microbial community
apatite
upwelling
phosphorite
1 Citation (Scopus)

Molecular evidence for novel mercury methylating microorganisms in sulfate-impacted lakes

Jones, D. S., Walker, G. M., Johnson, N., Mitchell, C. P. J., Coleman Wasik, J. K. & Bailey, J., Jul 1 2019, In : ISME Journal. 13, 7, p. 1659-1675 17 p.

Research output: Contribution to journalArticle

Lakes
Mercury
mercury
Sulfates
sulfates

REE+Y uptake and diagenesis in Recent sedimentary apatites

Lumiste, K., Mänd, K., Bailey, J., Paiste, P., Lang, L., Lepland, A. & Kirsimäe, K., Oct 20 2019, In : Chemical Geology. 525, p. 268-281 14 p.

Research output: Contribution to journalArticle

Apatites
apatite
diagenesis
rare earth element
Seawater
2018
5 Citations (Scopus)

Abrupt burial imparts persistent changes to the bacterial diversity of turbidite-associated sediment profiles

Harrison, B. K., Myrbo, A. E., Flood, B. E. & Bailey, J., Mar 1 2018, In : Geobiology. 16, 2, p. 190-202 13 p.

Research output: Contribution to journalArticle

turbidite
sediments
sediment
delta-Proteobacteria
microbial communities

Assessing biomarker syngeneity: An in situ approach using monoclonal antibodies

Medina Ferrer, F., Bailey, J., Corsetti, F., Moldowan, J. M., Barbanti, S. M., Caron, D. & Bryant-Huppert, J., Oct 1 2018, In : Organic Geochemistry. 124, p. 112-122 11 p.

Research output: Contribution to journalArticle

Biomarkers
antibody
biomarker
Squalene
Rocks
2 Citations (Scopus)

Authigenesis of biomorphic apatite particles from Benguela upwelling zone sediments off Namibia: The role of organic matter in sedimentary apatite nucleation and growth

Mänd, K., Kirsimäe, K., Lepland, A., Crosby, C. H., Bailey, J. V., Konhauser, K. O., Wirth, R., Schreiber, A. & Lumiste, K., Nov 2018, In : Geobiology. 16, 6, p. 640-658 19 p.

Research output: Contribution to journalArticle

authigenesis
apatite
Namibia
nucleation
upwelling
Gulf of Mexico
Thiosulfates
Genome
Styrene
Plasmids
5 Citations (Scopus)

Experimental precipitation of apatite pseudofossils resembling fossil embryos

Crosby, C. H. & Bailey, J., Jan 1 2018, In : Geobiology. 16, 1, p. 80-87 8 p.

Research output: Contribution to journalArticle

apatite
microfossils
embryo
fossils
rocks
7 Citations (Scopus)

Polyphosphate-accumulating bacteria: Potential contributors to mineral dissolution in the oral cavity

Breiland, A. A., Flood, B. E., Nikrad, J., Bakarich, J., Husman, M., Rhee, T. H., Jones, R. S. & Bailey, J. V., Apr 1 2018, In : Applied and environmental microbiology. 84, 7, e02440-17.

Research output: Contribution to journalArticle

Open Access
Polyphosphates
polyphosphates
Minerals
Mouth
mouth
2017
3 Citations (Scopus)
Nitrogen Fixation
Arsenic
Mercury
Sulfur
Plasmids
1 Citation (Scopus)

Imaging of cellular oxidoreductase activity suggests mixotrophic metabolisms in thiomargarita spp.

Bailey, J. V., Flood, B. E., Ricci, E. & Delherbe, N., Nov 1 2017, In : mBio. 8, 6, e01263-17.

Research output: Contribution to journalArticle

Oxidoreductases
Formazans
Bacteria
Succinic Acid
Coloring Agents
2 Citations (Scopus)

Novel large sulfur bacteria in the metagenomes of groundwater-fed chemosynthetic microbial mats in the Lake Huron basin

Sharrar, A. M., Flood, B. E., Bailey, J., Jones, D. S., Biddanda, B. A., Ruberg, S. A., Marcus, D. N. & Dick, G. J., May 8 2017, In : Frontiers in Microbiology. 8, MAY, 791.

Research output: Contribution to journalArticle

Metagenome
Groundwater
Thiothrix
Lakes
Sulfur
9 Citations (Scopus)

Novel microbial assemblages dominate weathered sulfidebearing rock from copper-nickel deposits in the Duluth Complex, Minnesota, USA

Jones, D. S., Lapakko, K. A., Wenz, Z. J., Olson, M. C., Roepke, E. W., Sadowsky, M. J., Novak, P. J. & Bailey, J., Aug 1 2017, In : Applied and environmental microbiology. 83, 16, e00909-17.

Research output: Contribution to journalArticle

Sulfides
Nickel
nickel
Copper
mine waste
2 Citations (Scopus)

Technical note: An economical apparatus for the observation and harvest of mineral precipitation experiments with light microscopy

Crosby, C. H. & Bailey, J., Apr 27 2017, In : Biogeosciences. 14, 8, p. 2151-2154 4 p.

Research output: Contribution to journalArticle

light microscopy
microscopy
polymers
chemistry
double diffusion
2016
1 Citation (Scopus)
microbial communities
microbial community
DNA
lakes
sediments
15 Citations (Scopus)

Metatranscriptomic insights into polyphosphate metabolism in marine sediments

Jones, D. S., Flood, B. E. & Bailey, J., Apr 1 2016, In : ISME Journal. 10, 4, p. 1015-1019 5 p.

Research output: Contribution to journalArticle

Geologic Sediments
Polyphosphates
polyphosphates
marine sediments
anoxic conditions
13 Citations (Scopus)

Single-cell (meta-)genomics of a dimorphic Candidatus thiomargarita nelsonii reveals genomic plasticity

Flood, B. E., Fliss, P., Jones, D. S., Dick, G. J., Jain, S., Kaster, A. K., Winkel, M., Mußmann, M. & Bailey, J., Jan 1 2016, In : Frontiers in Microbiology. 7, MAY, 603.

Research output: Contribution to journalArticle

Genomics
DNA Transposable Elements
S 10
Genome
Bacteria
17 Citations (Scopus)

Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox conditions

Winkel, M., Salman-Carvalho, V., Woyke, T., Richter, M., Schulz-Vogt, H. N., Flood, B. E., Bailey, J. V. & Mußmann, M., Jan 1 2016, In : Frontiers in Microbiology. 7, JUN, 964.

Research output: Contribution to journalArticle

Sulfur
Oxidation-Reduction
Cyanobacteria
Genome
Bacteria
2015
15 Citations (Scopus)

Barite encrustation of benthic sulfur-oxidizing bacteria at a marine cold seep

Stevens, E. W. N., Bailey, J., Flood, B. E., Jones, D. S., Gilhooly, W. P., Joye, S. B., Teske, A. & Mason, O. U., Nov 1 2015, In : Geobiology. 13, 6, p. 588-603 16 p.

Research output: Contribution to journalArticle

encrustation
cold seep
barite
sulfur
bacterium
16 Citations (Scopus)

Comparison of Archaeal and Bacterial Diversity in Methane Seep Carbonate Nodules and Host Sediments, Eel River Basin and Hydrate Ridge, USA

Mason, O. U., Case, D. H., Naehr, T. H., Lee, R. W., Thomas, R. B., Bailey, J. & Orphan, V. J., Oct 1 2015, In : Microbial ecology. 70, 3, p. 766-784 19 p.

Research output: Contribution to journalArticle

eel
methane
carbonates
river basin
carbonate
5 Citations (Scopus)
Polyhydroxyalkanoates
Gammaproteobacteria
Polyphosphates
Wetlands
Sulfur
14 Citations (Scopus)
Thiomargarita
Barbados
cold seep
accretionary prism
Sulfur
4 Citations (Scopus)

Rapid formation of framboidal sulfides on bone surfaces from a simulated marine carcass fall

Vietti, L. A., Bailey, J., Fox, D. L. & Rogers, R. R., Apr 1 2015, In : Palaios. 30, 4, p. 327-334 8 p.

Research output: Contribution to journalArticle

sulfides
bone
sulfide
bones
sulfide minerals
2014
20 Citations (Scopus)

Fossil evidence of iron-oxidizing chemolithotrophy linked to phosphogenesis in the wake of the Great Oxidation Event

Crosby, C. H., Bailey, J. & Sharma, M., Jan 1 2014, In : Geology. 42, 11, p. 1015-1018 4 p.

Research output: Contribution to journalArticle

phosphogenesis
fossil
oxidation
iron
oxygen
16 Citations (Scopus)
gene transfer
Cyanobacteria
cyanobacterium
genomics
rocks
2013
44 Citations (Scopus)

Filamentous sulfur bacteria preserved in modern and ancient phosphatic sediments: Implications for the role of oxygen and bacteria in phosphogenesis

Bailey, J., Corsetti, F. A., Greene, S. E., Crosby, C. H., Liu, P. & Orphan, V. J., Sep 1 2013, In : Geobiology. 11, 5, p. 397-405 9 p.

Research output: Contribution to journalArticle

phosphogenesis
phosphorite
sulfur
oxygen
sulfides
35 Citations (Scopus)

Phylogenetic and morphologic complexity of giant sulphur bacteria

Salman, V., Bailey, J. & Teske, A., Aug 1 2013, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 104, 2, p. 169-186 18 p.

Research output: Contribution to journalReview article

Sulfur
Bacteria
Vacuoles
Microbiological Techniques
rRNA Genes
2012
27 Citations (Scopus)

Experimental taphonomy of giant sulphur bacteria: Implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils

Cunningham, J. A., Thomas, C. W., Bengtson, S., Marone, F., Stampanoni, M., Turner, F. R., Bailey, J. V., Raff, R. A., Raff, E. C. & Donoghue, P. C. J., May 7 2012, In : Proceedings of the Royal Society B: Biological Sciences. 279, 1734, p. 1857-1864 8 p.

Research output: Contribution to journalArticle

Thiomargarita
Ediacaran
taphonomy
Sulfur
embryo
48 Citations (Scopus)

The role of microbes in the formation of modern and ancient phosphatic mineral deposits

Crosby, C. H. & Bailey, J., Jan 1 2012, In : Frontiers in Microbiology. 3, JUL

Research output: Contribution to journalArticle

Minerals
Bacteria
Sulfides
Bacterial Physiological Phenomena
Polyphosphates
2011
62 Citations (Scopus)

A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria

Salman, V., Amann, R., Girnth, A. C., Polerecky, L., Bailey, J., Høgslund, S., Jessen, G., Pantoja, S. & Schulz-Vogt, H. N., Jun 1 2011, In : Systematic and Applied Microbiology. 34, 4, p. 243-259 17 p.

Research output: Contribution to journalArticle

Sulfur
sulfur
taxonomy
Bacteria
bacterium
18 Citations (Scopus)

Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria

Bailey, J., Salman, V., Rouse, G. W., Schulz-Vogt, H. N., Levin, L. A. & Orphan, V. J., Dec 1 2011, In : ISME Journal. 5, 12, p. 1926-1935 10 p.

Research output: Contribution to journalArticle

Ecotype
ecotype
dimorphism
Methane
ecotypes

Palaeontology: Breathing room for early animals

Bailey, J., Jun 1 2011, In : Nature Geoscience. 4, 6, p. 354-355 2 p.

Research output: Contribution to journalShort survey

Ediacaran
annelid
microbial mat
trace fossil
paleontology
2010
16 Citations (Scopus)

Pseudofossils in relict methane seep carbonates resemble endemic microbial consortia

Bailey, J. V., Raub, T. D., Meckler, A. N., Harrison, B. K., Raub, T. M. D., Green, A. M. & Orphan, V. J., Jan 1 2010, In : Palaeogeography, Palaeoclimatology, Palaeoecology. 285, 1-2, p. 131-142 12 p.

Research output: Contribution to journalArticle

microstructure
methane
carbonates
eel
sulfides
2009
38 Citations (Scopus)

Chemotrophic microbial mats and their potential for preservation in the Rock Record

Bailey, J. V., Orphan, V. J., Joye, S. B. & Corsetti, F. A., Nov 1 2009, In : Astrobiology. 9, 9, p. 843-859 17 p.

Research output: Contribution to journalReview article

microbial mat
microorganisms
phosphorite
bacteria
rocks
2008
63 Citations (Scopus)

Genetic structure of a foundation species: scaling community phenotypes from the individual to the region.

Bangert, R. K., Lonsdorf, E. V., Wimp, G. M., Shuster, S. M., Fischer, D., Schweitzer, J. A., Allan, G. J., Bailey, J. K. & Whitham, T. G., Feb 1 2008, In : Heredity. 100, 2, p. 121-131 11 p.

Research output: Contribution to journalArticle

Genetic Structures
Arthropods
Phenotype
Ecosystem
Populus
2007
125 Citations (Scopus)

Evidence of giant sulphur bacteria in Neoproterozoic phosphorites

Bailey, J. V., Joye, S. B., Kalanetra, K. M., Flood, B. E. & Corsetti, F. A., Jan 11 2007, In : Nature. 445, 7124, p. 198-201 4 p.

Research output: Contribution to journalArticle

Sulfur
Bacteria
Cell Division
Eggs
Embryonic Structures
15 Citations (Scopus)

Palaeontology: Undressing and redressing Ediacaran embryos (reply)

Bailey, J. V., Joye, S. B., Kalanetra, K. M., Flood, B. E. & Corsetti, F. A., Apr 5 2007, In : Nature. 446, 7136, p. E10-E11

Research output: Contribution to journalComment/debate

Paleontology
Embryonic Structures
2006
120 Citations (Scopus)

COMMUNITY HERITABILITY MEASURES THE EVOLUTIONARY CONSEQUENCES OF INDIRECT GENETIC EFFECTS ON COMMUNITY STRUCTURE.

Shuster, S. M., Lonsdorf, E. V., Wimp, G. M., Bailey, J. K. & Whitham, T. G., May 1 2006, In : Evolution. 60, 5, p. 991-1003 13 p.

Research output: Contribution to journalArticle

Arthropods
heritability
Populus
arthropod
community structure
41 Citations (Scopus)

Microbially-mediated environmental influences on metazoan colonization of matground ecosystems: Evidence from the Lower Cambrian Harkless Formation

Bailey, J. V., Corsetti, F. A., Bottjer, D. J. & Marenco, K. N., Jun 1 2006, In : Palaios. 21, 3, p. 215-226 12 p.

Research output: Contribution to journalArticle

microbial mat
metazoan
colonization
fossils
trace fossil
2005
8 Citations (Scopus)

'All effects of a gene on the world': Extended phenotypes, feedbacks, and multi-level selection

Whitham, T. G., Lonsdorf, E., Schweitzer, J., Bailey, J., Fischer, D. G., Shuster, S. M., Lindroth, R. L., Hart, S. C., Allan, G. J., Gehring, C. A., Keim, P., Potts, B. M., Marks, J., Rehill, B. J., Difazio, S. P., Leroy, C. J., Wimp, G. M. & Woolbright, S., 2005, In : Ecoscience. 12, 1, p. 5-7 3 p.

Research output: Contribution to journalArticle

phenotype
gene
genes
effect
world
12 Citations (Scopus)

Lacustrine fossil preservation in acidic environments: Implications of experimental and field studies for the Cretaceous-Paleogene boundary acid rain trauma

Bailey, J. V., Cohen, A. S. & Kring, D. A., Aug 1 2005, In : Palaios. 20, 4, p. 376-389 14 p.

Research output: Contribution to journalReview article

acid deposition
acid rain
buffering
experimental study
fossils