If you made any changes in Pure, your changes will be visible here soon.

Research Output 2009 2019

2019
1 Citation (Scopus)

Approaches, applicability, and challenges for development of climate-smart soybean

Chaudhary, J., Shivaraj, S. M., Khatri, P., Ye, H., Zhou, L., Klepadlo, M., Dhakate, P., Kumawat, G., Patil, G., Sonah, H., Ratnaparkhe, M., Deshmukh, R. & Nguyen, H. T., Jan 1 2019, Genomic Designing of Climate-Smart Oilseed Crops. Springer International Publishing, p. 1-74 74 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic engineering
Bioinformatics
Climate
Soybeans
soybean
1 Citation (Scopus)

Avenues of the membrane transport system in adaptation of plants to abiotic stresses

Vishwakarma, K., Mishra, M., Patil, G., Mulkey, S., Ramawat, N., Pratap Singh, V., Deshmukh, R., Kumar Tripathi, D., Nguyen, H. T. & Sharma, S., Jan 1 2019, In : Critical Reviews in Biotechnology. 39, 7, p. 861-883 23 p.

Research output: Contribution to journalReview article

Homeostasis
Ions
Aquaporins
Membranes
Membrane Transport Proteins
1 Citation (Scopus)

Genome reorganization of the GmSHMT gene family in soybean showed a lack of functional redundancy in resistance to soybean cyst nematode

Lakhssassi, N., Patil, G., Piya, S., Zhou, Z., Baharlouei, A., Kassem, M. A., Lightfoot, D. A., Hewezi, T., Barakat, A., Nguyen, H. T. & Meksem, K., Dec 1 2019, In : Scientific reports. 9, 1, 1506.

Research output: Contribution to journalArticle

Soybeans
Cysts
Genome
Genes
Haplotypes
1 Citation (Scopus)

Identification of new loci for salt tolerance in soybean by high-resolution genome-wide association mapping

Do, T. D., Vuong, T. D., Dunn, D., Clubb, M., Valliyodan, B., Patil, G., Chen, P., Xu, D., Nguyen, H. T. & Shannon, J. G., Apr 25 2019, In : BMC Genomics. 20, 1, 318.

Research output: Contribution to journalArticle

Open Access
Salt-Tolerance
Soybeans
Genome
Single Nucleotide Polymorphism
Chromosomes, Human, Pair 3
3 Citations (Scopus)

Whole-genome re-sequencing reveals the impact of the interaction of copy number variants of the rhg1 and Rhg4 genes on broad-based resistance to soybean cyst nematode

Patil, G., Lakhssassi, N., Wan, J., Song, L., Zhou, Z., Klepadlo, M., Vuong, T. D., Stec, A. O., Kahil, S. S., Colantonio, V., Valliyodan, B., Rice, J. H., Piya, S., Hewezi, T., Stupar, R. M., Meksem, K. & Nguyen, H. T., Aug 1 2019, In : Plant Biotechnology Journal. 17, 8, p. 1595-1611 17 p.

Research output: Contribution to journalArticle

Open Access
Heterodera glycines
Soybeans
Cysts
Genome
genome
2018
2 Citations (Scopus)

Comparative genome analysis to identify SNPs associated with high oleic acid and elevated protein content in soybean

Kulkarni, K. P., Patil, G., Valliyodan, B., Vuong, T. D., Shannon, J. G., Nguyen, H. T. & Lee, J. D., Jan 1 2018, In : Genome. 61, 3, p. 217-222 6 p.

Research output: Contribution to journalArticle

Oleic Acid
Soybeans
Single Nucleotide Polymorphism
Genome
Proteins
8 Citations (Scopus)

Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping

Patil, G., Vuong, T. D., Kale, S., Valliyodan, B., Deshmukh, R., Zhu, C., Wu, X., Bai, Y., Yungbluth, D., Lu, F., Kumpatla, S., Shannon, J. G., Varshney, R. K. & Nguyen, H. T., Nov 2018, In : Plant Biotechnology Journal. 16, 11, p. 1939-1953 15 p.

Research output: Contribution to journalArticle

Chromosome Mapping
Soybeans
chromosome mapping
Sucrose
Quantitative Trait Loci
1 Citation (Scopus)

Evaluation of soybean germplasm for resistance to multiple nematode species: Heterodera glycines, Meloidogyne incognita, and Rotylenchulus reniformis

Klepadlo, M., Meinhardt, C. G., Vuong, T. D., Patil, G., Bachleda, N., Ye, H., Robbins, R. T., Li, Z., Shannon, J. G., Chen, P., Meksem, K. & Nguyen, H. T., Nov 1 2018, In : Crop Science. 58, 6, p. 2511-2522 12 p.

Research output: Contribution to journalArticle

Rotylenchulus reniformis
Heterodera glycines
Meloidogyne incognita
germplasm
maturity groups
10 Citations (Scopus)

Mapping and confirmation of loci for salt tolerance in a novel soybean germplasm, Fiskeby III

Do, T. D., Vuong, T. D., Dunn, D., Smothers, S., Patil, G., Yungbluth, D. C., Chen, P., Scaboo, A., Xu, D., Carter, T. E., Nguyen, H. T. & Grover Shannon, J., Mar 1 2018, In : Theoretical and Applied Genetics. 131, 3, p. 513-524 12 p.

Research output: Contribution to journalArticle

Salt-Tolerance
salt tolerance
Soybeans
germplasm
soybeans
2017
12 Citations (Scopus)

Development of SNP Genotyping Assays for Seed Composition Traits in Soybean

Patil, G., Chaudhary, J., Vuong, T. D., Jenkins, B., Qiu, D., Kadam, S., Shannon, G. J. & Nguyen, H. T., Jan 1 2017, In : International Journal of Plant Genomics. 2017, 6572969.

Research output: Contribution to journalArticle

Soybeans
genotyping
Single Nucleotide Polymorphism
Seeds
soybeans
14 Citations (Scopus)

Genetic mapping and haplotype analysis of a locus for quantitative resistance to Fusarium graminearum in soybean accession PI 567516C

Cheng, P., Gedling, C. R., Patil, G., Vuong, T. D., Shannon, J. G., Dorrance, A. E. & Nguyen, H. T., May 1 2017, In : Theoretical and Applied Genetics. 130, 5, p. 999-1010 12 p.

Research output: Contribution to journalArticle

Disease Resistance
Fusarium graminearum
Fusarium
Soybeans
Haplotypes
26 Citations (Scopus)

Molecular mapping and genomics of soybean seed protein: a review and perspective for the future

Patil, G., Mian, R., Vuong, T., Pantalone, V., Song, Q., Chen, P., Shannon, G. J., Carter, T. C. & Nguyen, H. T., Oct 1 2017, In : Theoretical and Applied Genetics. 130, 10, p. 1975-1991 17 p.

Research output: Contribution to journalReview article

Soybean Proteins
Genomics
chromosome mapping
Seeds
soy protein
2016
5 Citations (Scopus)

Genetic analysis of shoot fresh weight in a cross of wild (G. soja) and cultivated (G. max) soybean

Asekova, S., Kulkarni, K. P., Patil, G., Kim, M., Song, J. T., Nguyen, H. T., Grover Shannon, J. & Lee, J. D., Jul 1 2016, In : Molecular Breeding. 36, 7, 103.

Research output: Contribution to journalArticle

Glycine (Fabaceae)
Soybeans
genetic techniques and protocols
quantitative trait loci
soybeans
4 Citations (Scopus)

Genome-wide identification and characterization of Xylanase inhibitor protein (XIP) genes in cereals

Sonah, H., Chavan, S., Katara, J., Chaudhary, J., Kadam, S., Patil, G. & Deshmukh, R., May 2016, In : Indian Journal of Genetics and Plant Breeding. 76, 2, p. 159-166 8 p.

Research output: Contribution to journalArticle

xylanases
Genome
genome
Brachypodium
Proteins
63 Citations (Scopus)

Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean

Patil, G., Do, T., Vuong, T. D., Valliyodan, B., Lee, J. D., Chaudhary, J., Shannon, J. G. & Nguyen, H. T., Jan 19 2016, In : Scientific reports. 6, 19199.

Research output: Contribution to journalArticle

Salinity
Soybeans
Haplotypes
Single Nucleotide Polymorphism
Salts
40 Citations (Scopus)

Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq

Chen, W., Yao, Q., Patil, G. B., Agarwal, G., Deshmukh, R. K., Lin, L., Wang, B., Wang, Y., Prince, S. J., Song, L., Xu, D., An, Y. C., Valliyodan, B., Varshney, R. K. & Nguyen, H. T., Jul 19 2016, In : Frontiers in Plant Science. 7, JULY2016, 1044.

Research output: Contribution to journalArticle

drought
RNA
soybeans
gene expression
leaves
48 Citations (Scopus)

Landscape of genomic diversity and trait discovery in soybean

Valliyodan, B., Dan Qiu, Q., Patil, G., Zeng, P., Huang, J., Dai, L., Chen, C., Li, Y., Joshi, T., Song, L., Vuong, T. D., Musket, T. A., Xu, D., Shannon, J. G., Shifeng, C., Liu, X. & Nguyen, H. T., Mar 31 2016, In : Scientific reports. 6, 23598.

Research output: Contribution to journalArticle

Soybeans
Genome
Vegetable Proteins
DNA Shuffling
Plant Oils
11 Citations (Scopus)

Soybean tip gene family analysis and characterization of GmTIP1;5 and GmTIP2;5 water transport activity

Song, L., Nguyen, N., Deshmukh, R. K., Patil, G. B., Prince, S. J., Valliyodan, B., Mutava, R., Pike, S. M., Gassmann, W. & Nguyen, H. T., Oct 21 2016, In : Frontiers in Plant Science. 7, OCTOBER2016, 1564.

Research output: Contribution to journalArticle

tonoplast
soybeans
abiotic stress
genes
proteins
2015
13 Citations (Scopus)

A sweetpotato geranylgeranyl pyrophosphate synthase gene, ibggps, increases carotenoid content and enhances osmotic stress tolerance in arabidopsis thaliana

Chen, W., He, S., Liu, D., Patil, G. B., Zhai, H., Wang, F., Stephenson, T. J., Wang, Y., Wang, B., Valliyodan, B., Nguyen, H. T. & Liu, Q., Sep 16 2015, In : PloS one. 10, 9, A1248.

Research output: Contribution to journalArticle

Geranylgeranyl-Diphosphate Geranylgeranyltransferase
Genetically Modified Plants
Osmotic Pressure
Carotenoids
osmotic stress
17 Citations (Scopus)

Comparative analysis of the drought-responsive transcriptome in soybean lines contrasting for canopy wilting

Prince, S. J., Joshi, T., Mutava, R. N., Syed, N., Joao Vitor, M. D. S., Patil, G., Song, L., Wang, J. J., Lin, L., Chen, W., Shannon, J. G., Valliyodan, B., Xu, D. & Nguyen, H. T., Nov 1 2015, In : Plant Science. 240, p. 65-78 14 p.

Research output: Contribution to journalArticle

Droughts
wilting
Transcriptome
Soybeans
transcriptome
22 Citations (Scopus)

Core clock, SUB1, and ABAR genes mediate flooding and drought responses via alternative splicing in soybean

Syed, N. H., Prince, S. J., Mutava, R. N., Patil, G., Li, S., Chen, W., Babu, V., Joshi, T., Khan, S. & Nguyen, H. T., Dec 1 2015, In : Journal of experimental botany. 66, 22, p. 7129-7149 21 p.

Research output: Contribution to journalArticle

Droughts
alternative splicing
Alternative Splicing
Soybeans
drought
26 Citations (Scopus)

Expanding omics resources for improvement of soybean seed composition traits

Chaudhary, J., Patil, G. B., Sonah, H., Deshmukh, R. K., Vuong, T. D., Valliyodan, B. & Nguyen, H. T., Jan 1 2015, In : Frontiers in Plant Science. 6, NOVEMBER, p. 1-16 16 p., 1021.

Research output: Contribution to journalReview article

soybeans
seeds
carbohydrates
genetic markers
recurrent selection
24 Citations (Scopus)

Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean

Prince, S. J., Song, L., Qiu, D., Maldonado dos Santos, J. V., Chai, C., Joshi, T., Patil, G., Valliyodan, B., Vuong, T. D., Murphy, M., Krampis, K., Tucker, D. M., Biyashev, R., Dorrance, A. E., Maroof, S. A. S., Xu, D., Shannon, J. G. & Nguyen, H. T., Feb 25 2015, In : BMC Genomics. 16, 1, 132.

Research output: Contribution to journalArticle

Soybeans
Glycine
Quantitative Trait Loci
Genes
Chromosomes, Human, Pair 7
34 Citations (Scopus)

Genomic-assisted phylogenetic analysis and marker development for next generation soybean cyst nematode resistance breeding

Kadam, S., Vuong, T. D., Qiu, D., Meinhardt, C. G., Song, L., Deshmukh, R., Patil, G., Wan, J., Valliyodan, B., Scaboo, A. M., Shannon, J. G. & Nguyen, H. T., Jun 2 2015, In : Plant Science. 242, p. 342-350 9 p.

Research output: Contribution to journalArticle

Heterodera glycines
Soybeans
Breeding
Cysts
soybeans
68 Citations (Scopus)

Soybean (Glycine max) SWEET gene family: Insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis

Patil, G., Valliyodan, B., Deshmukh, R., Prince, S., Nicander, B., Zhao, M., Sonah, H., Song, L., Lin, L., Chaudhary, J., Liu, Y., Joshi, T., Xu, D. & Nguyen, H. T., Jul 11 2015, In : BMC Genomics. 16, 1, 520.

Research output: Contribution to journalArticle

Gene Expression Profiling
Genomics
Soybeans
Sequence Analysis
Genome
2014
81 Citations (Scopus)

Integrating omic approaches for abiotic stress tolerance in soybean

Deshmukh, R., Sonah, H., Patil, G., Chen, W., Prince, S., Mutava, R., Vuong, T., Valliyodan, B. & Nguyen, H. T., Jun 3 2014, In : Frontiers in Plant Science. 5, JUN, 244.

Research output: Contribution to journalReview article

stress tolerance
abiotic stress
soybeans
genomics
submergence
2013
8 Citations (Scopus)

Identification of two additional members of the tRNA isopentenyltransferase family in Physcomitrella patens

Patil, G. & Nicander, B., Jul 1 2013, In : Plant molecular biology. 82, 4-5, p. 417-426 10 p.

Research output: Contribution to journalArticle

Bryopsida
Physcomitrella patens
Gene Duplication
gene duplication
Transfer RNA
2009
19 Citations (Scopus)

Development of a phosphomannose isomerase-based Agrobacterium-mediated transformation system for chickpea (Cicer arietinum L.)

Patil, G., Deokar, A., Jain, P. K., Thengane, R. J. & Srinivasan, R., Aug 28 2009, In : Plant Cell Reports. 28, 11, p. 1669-1676 8 p.

Research output: Contribution to journalArticle

mannose-6-phosphate isomerase
Cicer arietinum
Agrobacterium
shoots
mannose
4 Citations (Scopus)

Glutamine improves shoot morphogenesis in chickpea (Cicer arietinum L.)

Patil, G., Patel, R., Jaat, R., Pattanayak, A., Jain, P. & Srinivasan, R., Sep 1 2009, In : Acta Physiologiae Plantarum. 31, 5, p. 1077-1084 8 p.

Research output: Contribution to journalArticle

Cicer
Cicer arietinum
Glutamine
Morphogenesis
glutamine