1982 …2020

Research output per year

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Research Output

2014

Poly(hydroxyalkanoate) elastomers and their graphene nanocomposites

Barrett, J. S. F., Abdala, A. A. & Srienc, F., Jun 24 2014, In : Macromolecules. 47, 12, p. 3926-3941 16 p.

Research output: Contribution to journalArticle

37 Scopus citations
2013

Genome-wide overexpression screen for sodium acetate resistance in Saccharomyces cerevisiae

Peña, P. V., Glasker, S. & Srienc, F., Mar 1 2013, In : Journal of Biotechnology. 164, 1, p. 26-33 8 p.

Research output: Contribution to journalArticle

11 Scopus citations

Synthesis of poly-(R)-3 hydroxyoctanoate (PHO) and its graphene nanocomposites

Abdala, A., Barrett, J. & Srienc, F., Nov 22 2013, Green Polymer Chem: Biocatalysis and Materials II. American Chemical Society, p. 199-209 11 p. (ACS Symposium Series; vol. 1144).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2012

Construction and elementary mode analysis of a metabolic model for Shewanella oneidensis MR-1

Flynn, C. M., Hunt, K. A., Gralnick, J. A. & Srienc, F., Feb 1 2012, In : BioSystems. 107, 2, p. 120-128 9 p.

Research output: Contribution to journalArticle

23 Scopus citations

Predicting the adaptive evolution of Thermoanaerobacterium saccharolyticum

Unrean, P. & Srienc, F., Apr 30 2012, In : Journal of Biotechnology. 158, 4, p. 259-266 8 p.

Research output: Contribution to journalArticle

7 Scopus citations
2011

Green Chemistry for the Production of Biodegradable, Biorenewable, Biocompatible, and Polymers

Barrett, J. S. F. & Srienc, F., Apr 12 2011, Biocatalysis for Green Chemistry and Chemical Process Development. John Wiley and Sons, p. 327-359 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Identification of gene over-expression targets for the development of robust yeast strains for cellulosic ethanol production

Pena, P. V., Glasker, S. & Srienc, F., Dec 1 2011, 11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings. (11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Metabolic networks evolve towards states of maximum entropy production

Unrean, P. & Srienc, F., Nov 1 2011, In : Metabolic Engineering. 13, 6, p. 666-673 8 p.

Research output: Contribution to journalArticle

39 Scopus citations

Parallelization of Nullspace Algorithm for the computation of metabolic pathways

Jevremović, D., Trinh, C. T., Srienc, F., Sosa, C. P. & Boley, D. L., Jun 1 2011, In : Parallel Computing. 37, 6-7, p. 261-278 18 p.

Research output: Contribution to journalArticle

19 Scopus citations

Single-cell tracking with a reversing flow cytometer

Sitton, G. & Srienc, F., Jan 1 2011, In : Cytometry Part A. 79 A, 1, p. 66-76 11 p.

Research output: Contribution to journalArticle

1 Scopus citations
2010

A statistical thermodynamical interpretation of metabolism

Srienc, F. & Unrean, P., Aug 2010, In : Entropy. 12, 8, p. 1921-1935 15 p.

Research output: Contribution to journalArticle

18 Scopus citations

Continuous production of ethanol from hexoses and pentoses using immobilized mixed cultures of Escherichia coli strains

Unrean, P. & Srienc, F., Oct 1 2010, In : Journal of Biotechnology. 150, 2, p. 215-223 9 p.

Research output: Contribution to journalArticle

22 Scopus citations

Deep eutectic solvents for Candida antarctica lipase B-catalyzed reactions

Gorke, J. T., Srienc, F. & Kazlauskas, R. J., Apr 28 2010, In : ACS Symposium Series. 1038, p. 169-180 12 p.

Research output: Contribution to journalArticle

20 Scopus citations

On algebraic properties of extreme pathways in metabolic networks

Jevremovic, D., Trinh, C. T., Srienc, F. & Boley, D., Feb 1 2010, In : Journal of Computational Biology. 17, 2, p. 107-119 13 p.

Research output: Contribution to journalArticle

12 Scopus citations

Rational design and construction of an efficient E. coli for production of diapolycopendioic acid

Unrean, P., Trinh, C. T. & Srienc, F., Mar 1 2010, In : Metabolic Engineering. 12, 2, p. 112-122 11 p.

Research output: Contribution to journalArticle

38 Scopus citations

Solubility and degradation of polyhydroxyalkanoate biopolymers in propylene carbonate

McChalicher, C. W. J., Srienc, F. & Rouse, D. P., Jun 1 2010, In : AIChE Journal. 56, 6, p. 1616-1625 10 p.

Research output: Contribution to journalArticle

16 Scopus citations

Thymineless death is associated with loss of essential genetic information from the replication origin

Sangurdekar, D. P., Hamann, B. L., Smirnov, D., Srienc, F., Hanawalt, P. C. & Khodursky, A. B., Mar 2010, In : Molecular Microbiology. 75, 6, p. 1455-1467 13 p.

Research output: Contribution to journalArticle

32 Scopus citations

Toward advanced ionic liquids. Polar, enzyme-friendly solvents for biocatalysis

Gorke, J., Srienc, F. & Kazlauskas, R. J., Feb 1 2010, In : Biotechnology and Bioprocess Engineering. 15, 1, p. 40-53 14 p.

Research output: Contribution to journalReview article

193 Scopus citations
2009

Elementary mode analysis: A useful metabolic pathway analysis tool for characterizing cellular metabolism

Trinh, C. T., Wlaschin, A. & Srienc, F., Jan 1 2009, In : Applied Microbiology and Biotechnology. 81, 5, p. 813-826 14 p.

Research output: Contribution to journalShort survey

182 Scopus citations

Flow cytometry without alignment of collection optics

Sitton, G. & Srienc, F., Dec 1 2009, In : Cytometry Part A. 75, 12, p. 990-998 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Metabolic engineering of Escherichia coli for efficient conversion of glycerol to ethanol

Trinh, C. T. & Srienc, F., Nov 1 2009, In : Applied and environmental microbiology. 75, 21, p. 6696-6705 10 p.

Research output: Contribution to journalArticle

99 Scopus citations

Optimized evolution in the cytostat: A monte carlo simulation

Gilbert, A. & Srienc, F., Jan 1 2009, In : Biotechnology and bioengineering. 102, 1, p. 221-231 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

Rapid strain improvement through optimized evolution in the cytostat

Gilbert, A., Sangurdekar, D. P. & Srienc, F., Jun 15 2009, In : Biotechnology and bioengineering. 103, 3, p. 500-512 13 p.

Research output: Contribution to journalArticle

20 Scopus citations
2008

Deep eutectic solvents: Inexpensive, biologically-derived media for enzyme catalysis

Gorke, J. T., Srienc, F. & Kazlauskas, R. J., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Design of efficient organisms using a combination of inverse metabolic engineering and metabolic evolution

Unrean, P., Trinh, C. & Srienc, F., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Growth dynamics of mammalian cells monitored with automated cell cycle staining and flow cytometry

Sitton, G. & Srienc, F., Jun 1 2008, In : Cytometry Part A. 73, 6, p. 538-545 8 p.

Research output: Contribution to journalArticle

14 Scopus citations

Hydrolase-catalyzed biotransformations in deep eutectic solvents

Gorke, J. T., Srienc, F. & Kazlauskas, R. J., Mar 7 2008, In : Chemical Communications. 10, p. 1235-1237 3 p.

Research output: Contribution to journalArticle

271 Scopus citations

Mammalian cell culture scale-up and fed-batch control using automated flow cytometry

Sitton, G. & Srienc, F., Jun 1 2008, In : Journal of Biotechnology. 135, 2, p. 174-180 7 p.

Research output: Contribution to journalArticle

38 Scopus citations

Minimal Eschenchia coli cell for the most efficient production of ethanol from hexoses and pentoses

Trinh, C. T., Unrean, P. & Srienc, F., Jun 1 2008, In : Applied and environmental microbiology. 74, 12, p. 3634-3643 10 p.

Research output: Contribution to journalArticle

194 Scopus citations
2007

Biological polyesters

Srienc, F., Nov 1 2007, In : Journal of Biotechnology. 132, 3, 1 p.

Research output: Contribution to journalEditorial

Design, construction, and performance of a carotenoid over-producing E. coli

Unrean, P., Trinh, C., Srienc, F. & Schmidt-Dannert, C., Dec 1 2007, 2007 AIChE Annual Meeting. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enzymatic synthesis of poly(hydroxyalkanoates) in ionic liquids

Gorke, J. T., Okrasa, K., Louwagie, A., Kazlauskas, R. J. & Srienc, F., Nov 1 2007, In : Journal of Biotechnology. 132, 3, p. 306-313 8 p.

Research output: Contribution to journalArticle

51 Scopus citations

Investigating the structure-property relationship of bacterial PHA block copolymers

McChalicher, C. W. J. & Srienc, F., Nov 1 2007, In : Journal of Biotechnology. 132, 3, p. 296-302 7 p.

Research output: Contribution to journalArticle

44 Scopus citations
2006

A classification based framework for quantitative description of large-scale microarray data

Sangurdekar, D. P., Srienc, F. & Khodursky, A. B., Apr 20 2006, In : Genome biology. 7, 4, R32.

Research output: Contribution to journalArticle

50 Scopus citations

Bacterial synthesis of PHA block copolymers

Pederson, E. N., McChalicher, C. W. J. & Srienc, F., Jun 1 2006, In : Biomacromolecules. 7, 6, p. 1904-1911 8 p.

Research output: Contribution to journalArticle

92 Scopus citations

Design, construction and performance of the most efficient biomass producing E. coli bacterium

Trinh, C. T., Carlson, R., Wlaschin, A. & Srienc, F., Nov 1 2006, In : Metabolic Engineering. 8, 6, p. 628-638 11 p.

Research output: Contribution to journalArticle

59 Scopus citations

Effects of recombinant precursor pathway variations on poly[(R)-3-hydroxybutyrate] synthesis in Saccharomyces cerevisiae

Carlson, R. & Srienc, F., Jul 25 2006, In : Journal of Biotechnology. 124, 3, p. 561-573 13 p.

Research output: Contribution to journalArticle

22 Scopus citations

Engineering the monomer composition of polyhydroxyalkanoates synthesized in Saccharomyces cerevisiae

Zhang, B., Carlson, R. & Srienc, F., Jan 1 2006, In : Applied and environmental microbiology. 72, 1, p. 536-543 8 p.

Research output: Contribution to journalArticle

32 Scopus citations

Process for making block biopolymers

Srienc, F., May 1 2006, Industrial Bioprocessing, 28, 5 1 p.

Research output: Contribution to specialist publicationArticle

Staining and quantification of poly-3-hydroxybutyrate in Saccharomyces cerevisiae and Cupriavidus necator cell populations using automated flow cytometry

Kacmar, J., Carlson, R., Balogh, S. J. & Srienc, F., Jan 1 2006, In : Cytometry Part A. 69, 1, p. 27-35 9 p.

Research output: Contribution to journalArticle

48 Scopus citations

The cytostat: A new way to study cell physiology in a precisely defined environment

Kacmar, J., Gilbert, A., Cockrell, J. & Srienc, F., Nov 1 2006, In : Journal of Biotechnology. 126, 2, p. 163-172 10 p.

Research output: Contribution to journalArticle

27 Scopus citations

The fractional contributions of elementary modes to the metabolism of Escherichia coli and their estimation from reaction entropies

Wlaschin, A. P., Trinh, C. T., Carlson, R. & Srienc, F., Jul 1 2006, In : Metabolic Engineering. 8, 4, p. 338-352 15 p.

Research output: Contribution to journalArticle

45 Scopus citations

Transient gene expression in CHO cells monitored with automated flow cytometry

Sitton, G., Hansgate, A. & Srienc, F., Sep 1 2006, In : Cytotechnology. 52, 1, p. 13-24 12 p.

Research output: Contribution to journalArticle

12 Scopus citations

Yeast produces tailor-made PHA polymers

Srienc, F., Feb 1 2006, Industrial Bioprocessing, 28, 2 1 p.

Research output: Contribution to specialist publicationArticle

2005

Automated flow cytometry for identification of population balance models

Gilbert, A., Kacmar, J. A. & Srienc, F., Dec 1 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Conference Proceedings. 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Characterizing transcriptional responses by condition-specific profiling of functional classes

Sangurdekar, D., Srienc, F. & Khodursky, A., Dec 1 2005. 1 p.

Research output: Contribution to conferencePaper

Determination of the fractional contribution of individual elementary modes to the overall metabolism of Escherichia coli

Wlaschin, A. P., Trinh, C. T. & Srienc, F., Dec 1 2005. 1 p.

Research output: Contribution to conferencePaper

23 Scopus citations

Kinetic studies and biochemical pathway analysis of anaerobic poly-(R)-3-hydroxybutyric acid synthesis in Escherichia coli

Carlson, R., Wlaschin, A. & Srienc, F., Feb 1 2005, In : Applied and environmental microbiology. 71, 2, p. 713-720 8 p.

Research output: Contribution to journalArticle

35 Scopus citations

Metabolic pathway structures for recombinant protein synthesis in Escherichia coli

Vijayasankaran, N., Carlson, R. & Srienc, F., Oct 1 2005, In : Applied Microbiology and Biotechnology. 68, 6, p. 737-746 10 p.

Research output: Contribution to journalArticle

25 Scopus citations