20092023

Research output per year

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Research Output

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Comment/debate
2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., Sep 1 2019, In : Nature biotechnology. 37, 9, 1 p.

Research output: Contribution to journalComment/debate

Open Access
2 Scopus citations
2017

A Microbiome Foundation for the Study of Crohn's Disease

Gevers, D., Kugathasan, S., Knights, D., Kostic, A. D., Knight, R. & Xavier, R. J., Mar 8 2017, In : Cell Host and Microbe. 21, 3, p. 301-304 4 p.

Research output: Contribution to journalComment/debate

Open Access
16 Scopus citations
2016

Erratum to: Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection Genome Medicine 8, (2016) 61]

Montassier, E., Al-Ghalith, G. A., Ward, T., Corvec, S., Gastinne, T., Potel, G., Moreau, P., De La Cochetiere, M. F., Batard, E. & Knights, D., May 26 2016, In : Genome medicine. 8, 1, 61.

Research output: Contribution to journalComment/debate

Open Access
2 Scopus citations
2014

Advancing the microbiome research community

Huttenhower, C., Knight, R., Brown, C. T., Caporaso, J. G., Clemente, J. C., Gevers, D., Franzosa, E. A., Kelley, S. T., Knights, D., Ley, R. E., Mahurkar, A., Ravel, J. & White, O., Oct 9 2014, In : Cell. 159, 2, p. 227-230 4 p.

Research output: Contribution to journalComment/debate

35 Scopus citations

Rethinking enterotypes

Knights, D., Ward, T. L., McKinlay, C. E., Miller, H., Gonzalez, A., McDonald, D. & Knight, R., Oct 8 2014, In : Cell Host and Microbe. 16, 4, p. 433-437 5 p.

Research output: Contribution to journalComment/debate

176 Scopus citations
2011

Human-associated microbial signatures: Examining their predictive value

Knights, D., Parfrey, L. W., Zaneveld, J., Lozupone, C. & Knight, R., Oct 4 2011, In : Cell Host and Microbe. 10, 4, p. 292-296 5 p.

Research output: Contribution to journalComment/debate

67 Scopus citations

Supervised classification of microbiota mitigates mislabeling errors

Knights, D., Kuczynski, J., Koren, O., Ley, R. E., Field, D., Knight, R., Desantis, T. Z. & Kelley, S. T., Apr 1 2011, In : ISME Journal. 5, 4, p. 570-573 4 p.

Research output: Contribution to journalComment/debate

19 Scopus citations

UniFrac: An effective distance metric for microbial community comparison

Lozupone, C., Lladser, M. E., Knights, D., Stombaugh, J. & Knight, R., Feb 1 2011, In : ISME Journal. 5, 2, p. 169-172 4 p.

Research output: Contribution to journalComment/debate

915 Scopus citations