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Fingerprint The Fingerprint is created by mining the titles and abstracts of the person's research outputs and projects/funding awards to create an index of weighted terms from discipline-specific thesauri.

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Microbiota Medicine & Life Sciences
Dysbiosis Medicine & Life Sciences
Metagenomics Medicine & Life Sciences
Bacteria Medicine & Life Sciences
rRNA Genes Medicine & Life Sciences
Genes Medicine & Life Sciences
Inflammatory Bowel Diseases Medicine & Life Sciences
Diet Medicine & Life Sciences

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Projects 2008 2023

The Alberta FYBER Study

Knights, D.

University of Alberta


Project: Research project

whole grain foods
healthy diet
small cereal grains
dietary fiber

Research Output 2009 2018

1 Citations

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

Clayton, J. B., Al-Ghalith, G. A., Long, H. T., Tuan, B. V., Cabana, F., Huang, H., Vangay, P., Ward, T., Minh, V. V., Tam, N. A., Dat, N. T., Travis, D. A., Murtaugh, M. P., Covert, H., Glander, K. E., Nadler, T., Toddes, B., Sha, J. C. M., Singer, R., Knights, D. & 1 othersJohnson, T. J., Dec 1 2018, In : Scientific Reports. 8, 1, 11159.

Research output: Contribution to journalArticle

Life Style

CLOUD: A non-parametric detection test for microbiome outliers

Montassier, E., Al-Ghalith, G. A., Hillmann, B., Viskocil, K. C., Kabage, A. J., McKinlay, C. E., Sadowsky, M. J., Khoruts, A. & Knights, D., Aug 6 2018, In : Microbiome. 6, 1, 137.

Research output: Contribution to journalArticle

Healthy Volunteers
Clostridium difficile
Immune System Diseases

Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment

Burns, M. B., Montassier, E., Abrahante, J., Priya, S., Niccum, D. E., Khoruts, A., Starr, T., Knights, D. & Blekhman, R., Jun 1 2018, In : PLoS genetics. 14, 6, e1007376.

Research output: Contribution to journalArticle

Tumor Microenvironment
colorectal neoplasms
microbial communities
microbial community
2 Citations

Development of the human mycobiome over the first month of life and across body sites

Ward, T. L., Dominguez-Bello, M. G., Heisel, T., Al-Ghalith, G., Knights, D. & Gale, C. A., May 1 2018, In : mSystems. 3, 3, e00140-17.

Research output: Contribution to journalArticle

human development
Human Development
skin (animal)

Evaluating the information content of shallow shotgun metagenomics

Hillmann, B., Al-Ghalith, G. A., Shields-Cutler, R. R., Zhu, Q., Gohl, D. M., Beckman, K. B., Knight, R. & Knights, D., Nov 1 2018, In : mSystems. 3, 6, e00069.

Research output: Contribution to journalArticle

Information Content
sequence analysis


Relationships between cecum, ileum and litter bacterial microbiomes in a commercial turkey flock, and the impact of penicillin treatment on early bacterial community establishment

Clayton, J. B. (Creator), Danzeisen, J. (Creator), Hayer, S. (Creator), Huang, H. (Creator), Johnson, T. (Creator), Knights, D. (Creator), McComb, B. (Creator), Data Repository for the University of Minnesota, 2015


Data from "Diverse Bacterial Communities Exist on Canine Skin and are Impacted by Cohabitation and Time"

Clayton, J. B. (Creator), Danzeisen, J. (Creator), Huang, H. (Creator), Johnson, T. (Creator), Knights, D. (Creator), Torres, S. M. (Creator), Ward, T. (Creator), Data Repository for the University of Minnesota, 2016